EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000003613 (Gene tree)
Gene ID: 102693382
Gene Symbol: safb
Alias: wu:fb40a03|wu:fd42g06|zgc:55387
Full Name: scaffold attachment factor B2-like
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 14282 bases
Position: chrLG19:5221262-5235543
Accession: 102693382
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004284	RRM_5	PF13893.6	1.4e-07	1	1
ENSLOCP00000004322	RRM_5	PF13893.6	1.7e-07	1	1
ENSLOCP00000004303	RRM_5	PF13893.6	1.8e-07	1	1
ENSLOCP00000004322	RRM_1	PF00076.22	7.7e-14	1	1
ENSLOCP00000004284	RRM_1	PF00076.22	7.8e-14	1	1
ENSLOCP00000004303	RRM_1	PF00076.22	8.8e-14	1	1
ENSLOCP00000004284	SAP	PF02037.27	1.1e-09	1	1
ENSLOCP00000004322	SAP	PF02037.27	1.1e-09	1	1
ENSLOCP00000004303	SAP	PF02037.27	1.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004330	-	3111	XM_006639992	ENSLOCP00000004322	850 (aa)	XP_015220960	W5M7G4
ENSLOCT00000004292	-	3261	-	ENSLOCP00000004284	830 (aa)	-	W5M7C6
ENSLOCT00000004311	-	3186	-	ENSLOCP00000004303	889 (aa)	-	W5M7E5

Gene Model

Click here to download ENSLOCG00000003613's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000003613's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000003613	safb	57	51.190	ENSLOCG00000013629	sltm	69	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000003613	safb	90	58.407	ENSG00000160633	SAFB	78	67.213	Homo_sapiens
ENSLOCG00000003613	safb	99	64.720	ENSAPOG00000022508	safb	98	63.361	Acanthochromis_polyacanthus
ENSLOCG00000003613	safb	76	45.852	ENSAMEG00000012254	SAFB	96	47.065	Ailuropoda_melanoleuca
ENSLOCG00000003613	safb	99	59.375	ENSACIG00000006247	safb	98	60.000	Amphilophus_citrinellus
ENSLOCG00000003613	safb	99	60.165	ENSAOCG00000006308	safb	98	62.255	Amphiprion_ocellaris
ENSLOCG00000003613	safb	99	64.726	ENSAPEG00000023342	safb	98	63.287	Amphiprion_percula
ENSLOCG00000003613	safb	99	64.319	ENSATEG00000004998	safb	98	64.774	Anabas_testudineus
ENSLOCG00000003613	safb	69	48.469	ENSAPLG00000006355	-	100	54.653	Anas_platyrhynchos
ENSLOCG00000003613	safb	94	45.628	ENSAPLG00000005780	-	98	50.169	Anas_platyrhynchos
ENSLOCG00000003613	safb	64	58.734	ENSACAG00000016893	-	96	48.307	Anolis_carolinensis
ENSLOCG00000003613	safb	90	59.292	ENSANAG00000028821	SAFB	97	46.781	Aotus_nancymaae
ENSLOCG00000003613	safb	99	62.021	ENSACLG00000001926	safb	98	61.467	Astatotilapia_calliptera
ENSLOCG00000003613	safb	98	65.607	ENSAMXG00000018154	safb	98	64.343	Astyanax_mexicanus
ENSLOCG00000003613	safb	99	48.064	ENSBTAG00000007875	SAFB	96	46.468	Bos_taurus
ENSLOCG00000003613	safb	50	62.092	ENSCJAG00000017081	SAFB	90	62.745	Callithrix_jacchus
ENSLOCG00000003613	safb	76	46.003	ENSCAFG00000018803	SAFB	84	46.788	Canis_familiaris
ENSLOCG00000003613	safb	76	46.003	ENSCAFG00020018943	SAFB	97	46.788	Canis_lupus_dingo
ENSLOCG00000003613	safb	99	48.347	ENSCHIG00000007262	SAFB	96	47.228	Capra_hircus
ENSLOCG00000003613	safb	90	59.292	ENSCCAG00000020193	SAFB	97	47.154	Cebus_capucinus
ENSLOCG00000003613	safb	90	57.522	ENSCATG00000029994	SAFB	97	46.939	Cercocebus_atys
ENSLOCG00000003613	safb	74	44.901	ENSCLAG00000007734	SAFB	96	47.771	Chinchilla_lanigera
ENSLOCG00000003613	safb	75	46.131	ENSCSAG00000009949	SAFB	97	46.939	Chlorocebus_sabaeus
ENSLOCG00000003613	safb	82	61.261	ENSCHOG00000003208	SAFB	88	39.591	Choloepus_hoffmanni
ENSLOCG00000003613	safb	94	48.523	ENSCPBG00000010928	-	98	49.479	Chrysemys_picta_bellii
ENSLOCG00000003613	safb	94	51.843	ENSCPBG00000010936	-	98	52.418	Chrysemys_picta_bellii
ENSLOCG00000003613	safb	83	51.744	ENSCANG00000004774	-	95	50.254	Colobus_angolensis_palliatus
ENSLOCG00000003613	safb	99	47.013	ENSCANG00000019754	-	97	45.415	Colobus_angolensis_palliatus
ENSLOCG00000003613	safb	73	45.205	ENSCGRG00001002254	Safb	97	45.360	Cricetulus_griseus_chok1gshd
ENSLOCG00000003613	safb	66	40.032	ENSCGRG00000011529	Safb	95	41.150	Cricetulus_griseus_crigri
ENSLOCG00000003613	safb	99	57.512	ENSCSEG00000019870	safb	99	56.776	Cynoglossus_semilaevis
ENSLOCG00000003613	safb	99	54.930	ENSCVAG00000002226	safb	98	53.991	Cyprinodon_variegatus
ENSLOCG00000003613	safb	98	61.827	ENSDARG00000020467	safb	98	62.113	Danio_rerio
ENSLOCG00000003613	safb	75	46.667	ENSDNOG00000015746	SAFB	95	44.510	Dasypus_novemcinctus
ENSLOCG00000003613	safb	73	43.359	ENSDORG00000016200	Safb	97	44.059	Dipodomys_ordii
ENSLOCG00000003613	safb	51	62.857	ENSETEG00000018679	SAFB	70	52.098	Echinops_telfairi
ENSLOCG00000003613	safb	74	46.202	ENSEASG00005023019	SAFB	97	46.745	Equus_asinus_asinus
ENSLOCG00000003613	safb	74	46.584	ENSECAG00000018659	SAFB	86	46.417	Equus_caballus
ENSLOCG00000003613	safb	99	64.442	ENSELUG00000022327	safb	98	64.672	Esox_lucius
ENSLOCG00000003613	safb	76	45.551	ENSFCAG00000011835	SAFB	97	46.517	Felis_catus
ENSLOCG00000003613	safb	66	46.967	ENSFALG00000013881	-	99	51.951	Ficedula_albicollis
ENSLOCG00000003613	safb	99	46.568	ENSFALG00000013882	-	89	49.200	Ficedula_albicollis
ENSLOCG00000003613	safb	87	56.364	ENSFDAG00000020306	SAFB	88	56.364	Fukomys_damarensis
ENSLOCG00000003613	safb	81	66.949	ENSFHEG00000004219	safb	98	55.986	Fundulus_heteroclitus
ENSLOCG00000003613	safb	99	57.674	ENSGMOG00000014280	safb	98	59.302	Gadus_morhua
ENSLOCG00000003613	safb	98	46.378	ENSGALG00000013365	-	95	50.654	Gallus_gallus
ENSLOCG00000003613	safb	73	49.048	ENSGALG00000001948	-	97	51.933	Gallus_gallus
ENSLOCG00000003613	safb	99	53.777	ENSGAFG00000016162	safb	99	51.293	Gambusia_affinis
ENSLOCG00000003613	safb	99	60.364	ENSGACG00000011385	safb	98	60.299	Gasterosteus_aculeatus
ENSLOCG00000003613	safb	99	52.601	ENSGAGG00000008424	-	98	53.384	Gopherus_agassizii
ENSLOCG00000003613	safb	73	49.280	ENSGAGG00000017702	-	97	52.280	Gopherus_agassizii
ENSLOCG00000003613	safb	90	58.407	ENSGGOG00000015109	SAFB	97	47.154	Gorilla_gorilla
ENSLOCG00000003613	safb	99	56.694	ENSHBUG00000009218	safb	98	54.715	Haplochromis_burtoni
ENSLOCG00000003613	safb	74	45.358	ENSHGLG00000015883	SAFB	96	45.797	Heterocephalus_glaber_female
ENSLOCG00000003613	safb	86	47.164	ENSHGLG00100004228	SAFB	94	47.471	Heterocephalus_glaber_male
ENSLOCG00000003613	safb	96	55.515	ENSHCOG00000001705	safb	99	55.744	Hippocampus_comes
ENSLOCG00000003613	safb	99	64.908	ENSIPUG00000024869	safb2	98	64.658	Ictalurus_punctatus
ENSLOCG00000003613	safb	69	43.820	ENSSTOG00000002783	SAFB	98	45.161	Ictidomys_tridecemlineatus
ENSLOCG00000003613	safb	74	44.978	ENSJJAG00000009021	Safb	97	45.588	Jaculus_jaculus
ENSLOCG00000003613	safb	99	60.950	ENSKMAG00000022308	safb	98	60.834	Kryptolebias_marmoratus
ENSLOCG00000003613	safb	99	64.236	ENSLBEG00000006015	safb	98	64.005	Labrus_bergylta
ENSLOCG00000003613	safb	98	55.471	ENSLACG00000018090	SAFB	98	56.377	Latimeria_chalumnae
ENSLOCG00000003613	safb	99	46.041	ENSLAFG00000003840	SAFB	96	47.318	Loxodonta_africana
ENSLOCG00000003613	safb	90	57.522	ENSMFAG00000003885	SAFB	97	47.154	Macaca_fascicularis
ENSLOCG00000003613	safb	90	57.522	ENSMMUG00000017970	SAFB	97	47.046	Macaca_mulatta
ENSLOCG00000003613	safb	84	50.526	ENSMNEG00000035637	SAFB	97	45.572	Macaca_nemestrina
ENSLOCG00000003613	safb	74	42.705	ENSMLEG00000038637	SAFB	97	45.297	Mandrillus_leucophaeus
ENSLOCG00000003613	safb	99	64.896	ENSMAMG00000003357	safb	89	64.147	Mastacembelus_armatus
ENSLOCG00000003613	safb	99	63.048	ENSMZEG00005009120	safb	98	62.890	Maylandia_zebra
ENSLOCG00000003613	safb	98	44.651	ENSMGAG00000001101	-	95	49.887	Meleagris_gallopavo
ENSLOCG00000003613	safb	55	66.912	ENSMGAG00000001051	-	97	51.946	Meleagris_gallopavo
ENSLOCG00000003613	safb	96	41.971	ENSMICG00000046795	-	71	75.362	Microcebus_murinus
ENSLOCG00000003613	safb	65	60.177	ENSMICG00000008739	-	86	60.177	Microcebus_murinus
ENSLOCG00000003613	safb	74	45.277	ENSMOCG00000014040	Safb	97	45.540	Microtus_ochrogaster
ENSLOCG00000003613	safb	99	46.835	ENSMODG00000001236	SAFB	95	46.882	Monodelphis_domestica
ENSLOCG00000003613	safb	99	64.352	ENSMALG00000020330	safb	98	64.129	Monopterus_albus
ENSLOCG00000003613	safb	74	44.545	MGP_CAROLIEiJ_G0021780	Safb	97	45.273	Mus_caroli
ENSLOCG00000003613	safb	74	44.697	ENSMUSG00000071054	Safb	97	45.312	Mus_musculus
ENSLOCG00000003613	safb	73	44.292	MGP_PahariEiJ_G0020769	Safb	97	45.226	Mus_pahari
ENSLOCG00000003613	safb	76	45.098	ENSMPUG00000006123	SAFB	90	46.957	Mustela_putorius_furo
ENSLOCG00000003613	safb	99	48.432	ENSMLUG00000001081	SAFB	97	46.146	Myotis_lucifugus
ENSLOCG00000003613	safb	74	44.597	ENSNGAG00000019882	Safb	97	44.715	Nannospalax_galili
ENSLOCG00000003613	safb	90	57.522	ENSNLEG00000013551	SAFB	98	47.439	Nomascus_leucogenys
ENSLOCG00000003613	safb	69	42.308	ENSOPRG00000011561	-	100	43.721	Ochotona_princeps
ENSLOCG00000003613	safb	74	44.427	ENSODEG00000014838	SAFB	96	45.650	Octodon_degus
ENSLOCG00000003613	safb	99	63.152	ENSONIG00000002318	safb	98	62.818	Oreochromis_niloticus
ENSLOCG00000003613	safb	92	41.912	ENSOCUG00000014628	SAFB	98	43.041	Oryctolagus_cuniculus
ENSLOCG00000003613	safb	98	59.277	ENSORLG00000016989	safb	98	58.736	Oryzias_latipes
ENSLOCG00000003613	safb	98	52.019	ENSORLG00020000404	safb	98	53.372	Oryzias_latipes_hni
ENSLOCG00000003613	safb	98	59.860	ENSORLG00015010733	safb	98	59.633	Oryzias_latipes_hsok
ENSLOCG00000003613	safb	99	60.885	ENSOMEG00000009066	safb	98	60.093	Oryzias_melastigma
ENSLOCG00000003613	safb	74	47.344	ENSOGAG00000027769	SAFB	95	46.688	Otolemur_garnettii
ENSLOCG00000003613	safb	91	43.346	ENSOARG00000007856	-	100	43.995	Ovis_aries
ENSLOCG00000003613	safb	99	45.091	ENSOARG00000007662	-	96	45.455	Ovis_aries
ENSLOCG00000003613	safb	90	58.407	ENSPPAG00000035129	SAFB	97	47.154	Pan_paniscus
ENSLOCG00000003613	safb	76	45.551	ENSPPRG00000017197	SAFB	97	46.517	Panthera_pardus
ENSLOCG00000003613	safb	90	58.407	ENSPTRG00000010335	SAFB	97	47.154	Pan_troglodytes
ENSLOCG00000003613	safb	90	57.522	ENSPANG00000007770	SAFB	97	47.122	Papio_anubis
ENSLOCG00000003613	safb	99	74.335	ENSPKIG00000009902	safb	98	74.220	Paramormyrops_kingsleyae
ENSLOCG00000003613	safb	99	50.857	ENSPSIG00000011679	-	98	52.836	Pelodiscus_sinensis
ENSLOCG00000003613	safb	99	50.376	ENSPSIG00000009367	-	97	50.267	Pelodiscus_sinensis
ENSLOCG00000003613	safb	74	44.512	ENSPEMG00000020428	Safb	97	45.750	Peromyscus_maniculatus_bairdii
ENSLOCG00000003613	safb	58	50.926	ENSPCIG00000009504	-	96	51.085	Phascolarctos_cinereus
ENSLOCG00000003613	safb	99	55.504	ENSPFOG00000007745	safb	100	55.119	Poecilia_formosa
ENSLOCG00000003613	safb	99	52.304	ENSPLAG00000001614	safb	98	53.066	Poecilia_latipinna
ENSLOCG00000003613	safb	99	55.634	ENSPMEG00000021023	safb	98	54.936	Poecilia_mexicana
ENSLOCG00000003613	safb	99	55.659	ENSPREG00000012496	safb	98	54.128	Poecilia_reticulata
ENSLOCG00000003613	safb	75	45.942	ENSPPYG00000009428	SAFB	97	46.939	Pongo_abelii
ENSLOCG00000003613	safb	94	43.991	ENSPCAG00000006475	SAFB	95	44.287	Procavia_capensis
ENSLOCG00000003613	safb	89	58.716	ENSPCOG00000014090	SAFB	97	45.797	Propithecus_coquereli
ENSLOCG00000003613	safb	85	67.593	ENSPVAG00000004913	SAFB	87	67.593	Pteropus_vampyrus
ENSLOCG00000003613	safb	91	76.812	ENSPNAG00000021838	safb	98	66.279	Pygocentrus_nattereri
ENSLOCG00000003613	safb	88	56.034	ENSRBIG00000042509	SAFB	96	44.229	Rhinopithecus_bieti
ENSLOCG00000003613	safb	90	58.407	ENSRROG00000029278	SAFB	97	47.154	Rhinopithecus_roxellana
ENSLOCG00000003613	safb	90	59.292	ENSSBOG00000026291	SAFB	97	46.939	Saimiri_boliviensis_boliviensis
ENSLOCG00000003613	safb	99	75.814	ENSSFOG00015008156	safb	98	74.884	Scleropages_formosus
ENSLOCG00000003613	safb	99	63.972	ENSSMAG00000009316	safb	98	63.972	Scophthalmus_maximus
ENSLOCG00000003613	safb	99	62.181	ENSSDUG00000009652	safb	98	62.747	Seriola_dumerili
ENSLOCG00000003613	safb	99	64.658	ENSSLDG00000001670	safb	98	64.959	Seriola_lalandi_dorsalis
ENSLOCG00000003613	safb	69	43.118	ENSSARG00000010475	SAFB	98	43.665	Sorex_araneus
ENSLOCG00000003613	safb	61	44.633	ENSSPUG00000009820	-	98	49.938	Sphenodon_punctatus
ENSLOCG00000003613	safb	66	42.241	ENSSPUG00000009747	-	99	42.469	Sphenodon_punctatus
ENSLOCG00000003613	safb	99	59.766	ENSSPAG00000015682	safb	98	59.485	Stegastes_partitus
ENSLOCG00000003613	safb	99	47.140	ENSSSCG00000013522	SAFB	98	47.500	Sus_scrofa
ENSLOCG00000003613	safb	97	45.633	ENSTGUG00000000502	-	99	49.557	Taeniopygia_guttata
ENSLOCG00000003613	safb	73	48.418	ENSTGUG00000000489	-	96	55.029	Taeniopygia_guttata
ENSLOCG00000003613	safb	99	61.860	ENSTRUG00000003567	safb	98	62.005	Takifugu_rubripes
ENSLOCG00000003613	safb	99	52.294	ENSTNIG00000015470	safb	100	54.816	Tetraodon_nigroviridis
ENSLOCG00000003613	safb	87	81.081	ENSTTRG00000013588	SAFB	89	81.081	Tursiops_truncatus
ENSLOCG00000003613	safb	51	45.455	ENSUAMG00000024543	SAFB	89	45.691	Ursus_americanus
ENSLOCG00000003613	safb	76	48.748	ENSUMAG00000009734	SAFB	68	66.667	Ursus_maritimus
ENSLOCG00000003613	safb	74	54.645	ENSVPAG00000012043	SAFB	79	49.728	Vicugna_pacos
ENSLOCG00000003613	safb	76	46.154	ENSVVUG00000013720	SAFB	84	46.406	Vulpes_vulpes
ENSLOCG00000003613	safb	73	44.904	ENSXETG00000008755	safb	97	50.288	Xenopus_tropicalis
ENSLOCG00000003613	safb	99	55.594	ENSXMAG00000003458	safb	98	54.545	Xiphophorus_maculatus