EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000003746 (Gene tree)
Gene ID: 102692572
Gene Symbol: lsm14b
Alias: zRAP55|zgc:55673
Full Name: LSM family member 14B
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 6469 bases
Position: chrLG18:7563742-7570210
Accession: 102692572
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004464	FDF	PF09532.10	1.9e-17	1	1
ENSLOCP00000004481	FDF	PF09532.10	2.2e-17	1	1
ENSLOCP00000004481	LSM14	PF12701.7	1.6e-29	1	1
ENSLOCP00000004464	LSM14	PF12701.7	9.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004489	-	1167	XM_006639561	ENSLOCP00000004481	388 (aa)	XP_006639624	W5M7X3
ENSLOCT00000004472	-	1194	-	ENSLOCP00000004464	359 (aa)	-	W5M7V6

Gene Model

Click here to download ENSLOCG00000003746's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000003746's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000003746	lsm14b	91	48.157	ENSLOCG00000002022	lsm14ab	83	47.445

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000003746	lsm14b	99	63.077	ENSG00000149657	LSM14B	99	63.077	Homo_sapiens
ENSLOCG00000003746	lsm14b	90	60.340	ENSAPOG00000001780	lsm14b	99	59.640	Acanthochromis_polyacanthus
ENSLOCG00000003746	lsm14b	99	57.209	ENSAMEG00000013430	LSM14B	100	57.209	Ailuropoda_melanoleuca
ENSLOCG00000003746	lsm14b	91	55.966	ENSACIG00000012266	lsm14b	90	55.398	Amphilophus_citrinellus
ENSLOCG00000003746	lsm14b	90	59.943	ENSAOCG00000012380	lsm14b	99	59.278	Amphiprion_ocellaris
ENSLOCG00000003746	lsm14b	97	53.886	ENSAOCG00000006667	LSM14B	91	52.778	Amphiprion_ocellaris
ENSLOCG00000003746	lsm14b	90	57.020	ENSAPEG00000023633	lsm14b	99	56.364	Amphiprion_percula
ENSLOCG00000003746	lsm14b	74	47.119	ENSATEG00000015895	LSM14B	87	46.154	Anabas_testudineus
ENSLOCG00000003746	lsm14b	90	58.357	ENSATEG00000016603	lsm14b	90	57.584	Anabas_testudineus
ENSLOCG00000003746	lsm14b	96	55.330	ENSAPLG00000013203	LSM14B	99	55.388	Anas_platyrhynchos
ENSLOCG00000003746	lsm14b	100	61.750	ENSACAG00000016195	LSM14B	99	62.250	Anolis_carolinensis
ENSLOCG00000003746	lsm14b	99	62.532	ENSANAG00000037915	LSM14B	99	62.245	Aotus_nancymaae
ENSLOCG00000003746	lsm14b	99	57.474	ENSACLG00000019663	lsm14b	99	57.732	Astatotilapia_calliptera
ENSLOCG00000003746	lsm14b	100	68.657	ENSAMXG00000002865	lsm14b	100	68.983	Astyanax_mexicanus
ENSLOCG00000003746	lsm14b	99	57.176	ENSBTAG00000021558	LSM14B	99	57.176	Bos_taurus
ENSLOCG00000003746	lsm14b	99	62.850	ENSCJAG00000014434	LSM14B	99	62.850	Callithrix_jacchus
ENSLOCG00000003746	lsm14b	96	54.499	ENSCAFG00000012518	LSM14B	98	54.756	Canis_familiaris
ENSLOCG00000003746	lsm14b	99	63.683	ENSCAFG00020022150	LSM14B	99	63.683	Canis_lupus_dingo
ENSLOCG00000003746	lsm14b	99	63.613	ENSCHIG00000010284	-	99	63.613	Capra_hircus
ENSLOCG00000003746	lsm14b	99	48.320	ENSCHIG00000022681	-	99	47.013	Capra_hircus
ENSLOCG00000003746	lsm14b	96	60.057	ENSTSYG00000031914	LSM14B	89	60.057	Carlito_syrichta
ENSLOCG00000003746	lsm14b	96	60.172	ENSCAPG00000013059	LSM14B	100	60.458	Cavia_aperea
ENSLOCG00000003746	lsm14b	96	60.632	ENSCPOG00000038080	LSM14B	100	60.632	Cavia_porcellus
ENSLOCG00000003746	lsm14b	99	62.532	ENSCCAG00000021267	LSM14B	99	62.245	Cebus_capucinus
ENSLOCG00000003746	lsm14b	99	44.615	ENSCCAG00000024900	-	82	44.615	Cebus_capucinus
ENSLOCG00000003746	lsm14b	99	62.564	ENSCATG00000036006	LSM14B	99	62.564	Cercocebus_atys
ENSLOCG00000003746	lsm14b	96	61.032	ENSCLAG00000003186	LSM14B	100	61.032	Chinchilla_lanigera
ENSLOCG00000003746	lsm14b	99	57.343	ENSCSAG00000015729	LSM14B	99	57.343	Chlorocebus_sabaeus
ENSLOCG00000003746	lsm14b	100	58.565	ENSCPBG00000027065	LSM14B	100	58.565	Chrysemys_picta_bellii
ENSLOCG00000003746	lsm14b	96	59.770	ENSCANG00000036986	LSM14B	100	59.770	Colobus_angolensis_palliatus
ENSLOCG00000003746	lsm14b	99	62.944	ENSCGRG00001018399	Lsm14b	99	62.944	Cricetulus_griseus_chok1gshd
ENSLOCG00000003746	lsm14b	66	47.518	ENSCGRG00000006111	-	90	46.931	Cricetulus_griseus_crigri
ENSLOCG00000003746	lsm14b	69	47.791	ENSCGRG00000002484	-	100	47.581	Cricetulus_griseus_crigri
ENSLOCG00000003746	lsm14b	97	51.139	ENSCSEG00000020669	LSM14B	92	50.667	Cynoglossus_semilaevis
ENSLOCG00000003746	lsm14b	90	57.062	ENSCSEG00000004722	lsm14b	90	55.932	Cynoglossus_semilaevis
ENSLOCG00000003746	lsm14b	71	39.080	ENSCVAG00000012433	-	89	46.094	Cyprinodon_variegatus
ENSLOCG00000003746	lsm14b	92	60.165	ENSDARG00000025386	lsm14b	91	61.496	Danio_rerio
ENSLOCG00000003746	lsm14b	75	49.196	ENSDNOG00000025246	LSM14B	100	49.196	Dasypus_novemcinctus
ENSLOCG00000003746	lsm14b	96	59.714	ENSDORG00000016683	Lsm14b	100	47.588	Dipodomys_ordii
ENSLOCG00000003746	lsm14b	63	51.542	ENSETEG00000011188	-	96	51.542	Echinops_telfairi
ENSLOCG00000003746	lsm14b	99	52.185	ENSETEG00000001869	-	89	49.858	Echinops_telfairi
ENSLOCG00000003746	lsm14b	75	51.264	ENSEASG00005023218	LSM14B	100	50.185	Equus_asinus_asinus
ENSLOCG00000003746	lsm14b	99	63.846	ENSECAG00000010659	LSM14B	99	63.846	Equus_caballus
ENSLOCG00000003746	lsm14b	64	77.000	ENSEEUG00000007331	LSM14B	79	79.000	Erinaceus_europaeus
ENSLOCG00000003746	lsm14b	100	57.250	ENSELUG00000016299	LSM14B	100	57.653	Esox_lucius
ENSLOCG00000003746	lsm14b	99	67.602	ENSELUG00000005780	lsm14b	91	67.787	Esox_lucius
ENSLOCG00000003746	lsm14b	99	64.194	ENSFCAG00000003248	LSM14B	99	64.194	Felis_catus
ENSLOCG00000003746	lsm14b	96	55.867	ENSFALG00000010618	LSM14B	99	56.345	Ficedula_albicollis
ENSLOCG00000003746	lsm14b	96	58.908	ENSFDAG00000002214	LSM14B	100	58.908	Fukomys_damarensis
ENSLOCG00000003746	lsm14b	99	55.499	ENSFHEG00000006237	lsm14b	99	52.685	Fundulus_heteroclitus
ENSLOCG00000003746	lsm14b	81	47.929	ENSFHEG00000003362	LSM14B	81	49.398	Fundulus_heteroclitus
ENSLOCG00000003746	lsm14b	99	56.883	ENSGMOG00000017115	lsm14b	98	57.143	Gadus_morhua
ENSLOCG00000003746	lsm14b	100	63.500	ENSGALG00000005125	LSM14B	100	63.250	Gallus_gallus
ENSLOCG00000003746	lsm14b	99	52.185	ENSGAFG00000020318	lsm14b	99	52.185	Gambusia_affinis
ENSLOCG00000003746	lsm14b	72	44.231	ENSGAFG00000013723	LSM14B	85	40.343	Gambusia_affinis
ENSLOCG00000003746	lsm14b	91	57.627	ENSGACG00000009973	lsm14b	91	57.143	Gasterosteus_aculeatus
ENSLOCG00000003746	lsm14b	69	55.200	ENSGAGG00000004106	LSM14B	94	55.200	Gopherus_agassizii
ENSLOCG00000003746	lsm14b	99	59.167	ENSGGOG00000005630	LSM14B	97	59.167	Gorilla_gorilla
ENSLOCG00000003746	lsm14b	99	62.308	ENSHGLG00000015055	LSM14B	99	62.087	Heterocephalus_glaber_female
ENSLOCG00000003746	lsm14b	96	58.046	ENSHGLG00100015273	LSM14B	100	57.835	Heterocephalus_glaber_male
ENSLOCG00000003746	lsm14b	96	52.243	ENSHCOG00000018747	LSM14B	92	51.811	Hippocampus_comes
ENSLOCG00000003746	lsm14b	67	46.281	ENSHCOG00000004867	lsm14b	87	46.281	Hippocampus_comes
ENSLOCG00000003746	lsm14b	100	67.949	ENSIPUG00000014946	lsm14b	95	68.367	Ictalurus_punctatus
ENSLOCG00000003746	lsm14b	96	59.770	ENSSTOG00000020482	LSM14B	100	59.770	Ictidomys_tridecemlineatus
ENSLOCG00000003746	lsm14b	99	63.918	ENSJJAG00000012728	Lsm14b	99	63.776	Jaculus_jaculus
ENSLOCG00000003746	lsm14b	56	44.928	ENSKMAG00000012834	-	85	44.776	Kryptolebias_marmoratus
ENSLOCG00000003746	lsm14b	90	58.074	ENSKMAG00000017524	lsm14b	90	56.941	Kryptolebias_marmoratus
ENSLOCG00000003746	lsm14b	75	44.238	ENSLBEG00000007951	LSM14B	85	40.171	Labrus_bergylta
ENSLOCG00000003746	lsm14b	90	58.734	ENSLACG00000003849	LSM14B	100	59.028	Latimeria_chalumnae
ENSLOCG00000003746	lsm14b	97	60.335	ENSLAFG00000007492	LSM14B	100	60.335	Loxodonta_africana
ENSLOCG00000003746	lsm14b	99	63.077	ENSMFAG00000041479	LSM14B	99	63.077	Macaca_fascicularis
ENSLOCG00000003746	lsm14b	99	63.077	ENSMMUG00000014084	LSM14B	99	63.077	Macaca_mulatta
ENSLOCG00000003746	lsm14b	99	63.077	ENSMNEG00000045573	LSM14B	99	63.077	Macaca_nemestrina
ENSLOCG00000003746	lsm14b	96	59.483	ENSMLEG00000040895	LSM14B	100	59.483	Mandrillus_leucophaeus
ENSLOCG00000003746	lsm14b	98	53.806	ENSMAMG00000024124	LSM14B	91	52.542	Mastacembelus_armatus
ENSLOCG00000003746	lsm14b	90	58.192	ENSMAMG00000020539	lsm14b	90	58.192	Mastacembelus_armatus
ENSLOCG00000003746	lsm14b	91	50.272	ENSMZEG00005026001	LSM14B	93	50.693	Maylandia_zebra
ENSLOCG00000003746	lsm14b	99	56.701	ENSMZEG00005000987	lsm14b	99	56.959	Maylandia_zebra
ENSLOCG00000003746	lsm14b	96	60.169	ENSMGAG00000005300	LSM14B	99	59.722	Meleagris_gallopavo
ENSLOCG00000003746	lsm14b	99	63.427	ENSMAUG00000020700	Lsm14b	99	62.944	Mesocricetus_auratus
ENSLOCG00000003746	lsm14b	99	63.846	ENSMICG00000014675	LSM14B	99	63.846	Microcebus_murinus
ENSLOCG00000003746	lsm14b	67	41.516	ENSMOCG00000005119	-	91	41.852	Microtus_ochrogaster
ENSLOCG00000003746	lsm14b	99	63.171	ENSMOCG00000020600	Lsm14b	99	63.171	Microtus_ochrogaster
ENSLOCG00000003746	lsm14b	92	53.631	ENSMMOG00000017321	LSM14B	90	51.676	Mola_mola
ENSLOCG00000003746	lsm14b	90	53.973	ENSMMOG00000020042	lsm14b	93	52.877	Mola_mola
ENSLOCG00000003746	lsm14b	75	50.645	ENSMODG00000016690	LSM14B	100	50.645	Monodelphis_domestica
ENSLOCG00000003746	lsm14b	100	55.949	ENSMALG00000004783	lsm14b	90	56.410	Monopterus_albus
ENSLOCG00000003746	lsm14b	93	52.044	ENSMALG00000022251	LSM14B	98	52.956	Monopterus_albus
ENSLOCG00000003746	lsm14b	99	63.427	MGP_CAROLIEiJ_G0024770	Lsm14b	99	63.427	Mus_caroli
ENSLOCG00000003746	lsm14b	99	63.427	ENSMUSG00000039108	Lsm14b	99	63.427	Mus_musculus
ENSLOCG00000003746	lsm14b	99	63.939	MGP_PahariEiJ_G0026214	Lsm14b	99	63.939	Mus_pahari
ENSLOCG00000003746	lsm14b	99	63.427	MGP_SPRETEiJ_G0025693	Lsm14b	99	63.427	Mus_spretus
ENSLOCG00000003746	lsm14b	96	55.412	ENSMPUG00000007584	LSM14B	100	53.659	Mustela_putorius_furo
ENSLOCG00000003746	lsm14b	99	63.544	ENSMLUG00000000304	LSM14B	99	63.038	Myotis_lucifugus
ENSLOCG00000003746	lsm14b	65	51.271	ENSNGAG00000016550	Lsm14b	99	51.271	Nannospalax_galili
ENSLOCG00000003746	lsm14b	96	60.057	ENSNLEG00000015757	LSM14B	100	60.057	Nomascus_leucogenys
ENSLOCG00000003746	lsm14b	75	80.282	ENSMEUG00000008267	-	75	80.986	Notamacropus_eugenii
ENSLOCG00000003746	lsm14b	53	87.500	ENSOPRG00000000447	-	58	87.500	Ochotona_princeps
ENSLOCG00000003746	lsm14b	99	62.821	ENSODEG00000004099	LSM14B	99	62.821	Octodon_degus
ENSLOCG00000003746	lsm14b	90	58.523	ENSONIG00000020318	lsm14b	99	58.247	Oreochromis_niloticus
ENSLOCG00000003746	lsm14b	73	58.947	ENSOANG00000003370	LSM14B	98	59.649	Ornithorhynchus_anatinus
ENSLOCG00000003746	lsm14b	96	58.857	ENSOCUG00000006279	LSM14B	99	59.143	Oryctolagus_cuniculus
ENSLOCG00000003746	lsm14b	90	57.265	ENSORLG00000013525	lsm14b	90	56.410	Oryzias_latipes
ENSLOCG00000003746	lsm14b	93	48.787	ENSORLG00000028353	LSM14B	91	47.091	Oryzias_latipes
ENSLOCG00000003746	lsm14b	67	37.453	ENSORLG00020018191	-	85	35.632	Oryzias_latipes_hni
ENSLOCG00000003746	lsm14b	90	57.265	ENSORLG00020020553	lsm14b	90	56.410	Oryzias_latipes_hni
ENSLOCG00000003746	lsm14b	93	48.518	ENSORLG00015013157	LSM14B	91	46.814	Oryzias_latipes_hsok
ENSLOCG00000003746	lsm14b	90	57.265	ENSORLG00015016862	lsm14b	90	56.410	Oryzias_latipes_hsok
ENSLOCG00000003746	lsm14b	90	57.307	ENSOMEG00000023917	lsm14b	90	56.447	Oryzias_melastigma
ENSLOCG00000003746	lsm14b	70	39.683	ENSOMEG00000000171	-	83	37.447	Oryzias_melastigma
ENSLOCG00000003746	lsm14b	99	58.275	ENSOGAG00000003915	LSM14B	99	58.275	Otolemur_garnettii
ENSLOCG00000003746	lsm14b	97	53.924	ENSOARG00000014706	LSM14B	99	53.924	Ovis_aries
ENSLOCG00000003746	lsm14b	99	59.167	ENSPPAG00000035799	LSM14B	97	59.167	Pan_paniscus
ENSLOCG00000003746	lsm14b	99	64.194	ENSPPRG00000009197	LSM14B	99	64.194	Panthera_pardus
ENSLOCG00000003746	lsm14b	66	51.046	ENSPTIG00000021518	LSM14B	91	48.540	Panthera_tigris_altaica
ENSLOCG00000003746	lsm14b	99	63.077	ENSPTRG00000013696	LSM14B	99	63.077	Pan_troglodytes
ENSLOCG00000003746	lsm14b	99	62.821	ENSPANG00000011747	LSM14B	99	62.821	Papio_anubis
ENSLOCG00000003746	lsm14b	100	71.134	ENSPKIG00000003275	lsm14b	88	88.660	Paramormyrops_kingsleyae
ENSLOCG00000003746	lsm14b	96	61.080	ENSPSIG00000014762	LSM14B	99	61.080	Pelodiscus_sinensis
ENSLOCG00000003746	lsm14b	99	62.725	ENSPEMG00000017688	Lsm14b	100	62.725	Peromyscus_maniculatus_bairdii
ENSLOCG00000003746	lsm14b	99	64.615	ENSPCIG00000013405	LSM14B	99	64.615	Phascolarctos_cinereus
ENSLOCG00000003746	lsm14b	99	54.897	ENSPFOG00000005631	lsm14b	99	54.124	Poecilia_formosa
ENSLOCG00000003746	lsm14b	90	49.296	ENSPLAG00000005793	LSM14B	90	47.025	Poecilia_latipinna
ENSLOCG00000003746	lsm14b	99	55.412	ENSPLAG00000002449	lsm14b	99	54.639	Poecilia_latipinna
ENSLOCG00000003746	lsm14b	90	49.577	ENSPMEG00000022953	LSM14B	90	48.295	Poecilia_mexicana
ENSLOCG00000003746	lsm14b	99	54.639	ENSPMEG00000000745	lsm14b	99	54.381	Poecilia_mexicana
ENSLOCG00000003746	lsm14b	67	39.535	ENSPREG00000007828	LSM14B	85	37.600	Poecilia_reticulata
ENSLOCG00000003746	lsm14b	99	56.049	ENSPPYG00000011194	LSM14B	99	57.002	Pongo_abelii
ENSLOCG00000003746	lsm14b	99	63.846	ENSPCOG00000013625	LSM14B	99	63.846	Propithecus_coquereli
ENSLOCG00000003746	lsm14b	87	50.307	ENSPVAG00000017918	LSM14B	100	49.848	Pteropus_vampyrus
ENSLOCG00000003746	lsm14b	100	69.975	ENSPNAG00000012777	lsm14b	100	69.975	Pygocentrus_nattereri
ENSLOCG00000003746	lsm14b	99	57.442	ENSRNOG00000054557	Lsm14b	99	57.275	Rattus_norvegicus
ENSLOCG00000003746	lsm14b	96	60.172	ENSRBIG00000033461	LSM14B	99	60.172	Rhinopithecus_bieti
ENSLOCG00000003746	lsm14b	97	58.924	ENSRROG00000042949	LSM14B	91	60.224	Rhinopithecus_roxellana
ENSLOCG00000003746	lsm14b	96	59.490	ENSSBOG00000032820	LSM14B	100	59.259	Saimiri_boliviensis_boliviensis
ENSLOCG00000003746	lsm14b	96	62.147	ENSSHAG00000015528	LSM14B	96	62.429	Sarcophilus_harrisii
ENSLOCG00000003746	lsm14b	100	70.051	ENSSFOG00015004627	lsm14b	100	70.558	Scleropages_formosus
ENSLOCG00000003746	lsm14b	97	55.928	ENSSMAG00000000135	LSM14B	91	54.972	Scophthalmus_maximus
ENSLOCG00000003746	lsm14b	100	60.000	ENSSMAG00000012725	lsm14b	91	61.003	Scophthalmus_maximus
ENSLOCG00000003746	lsm14b	100	56.927	ENSSDUG00000022770	LSM14B	100	57.431	Seriola_dumerili
ENSLOCG00000003746	lsm14b	99	58.824	ENSSDUG00000020977	lsm14b	90	59.718	Seriola_dumerili
ENSLOCG00000003746	lsm14b	75	44.983	ENSSLDG00000011354	-	100	47.751	Seriola_lalandi_dorsalis
ENSLOCG00000003746	lsm14b	58	50.476	ENSSARG00000007749	-	100	50.476	Sorex_araneus
ENSLOCG00000003746	lsm14b	92	59.360	ENSSPUG00000014360	LSM14B	100	58.904	Sphenodon_punctatus
ENSLOCG00000003746	lsm14b	72	43.431	ENSSPAG00000018854	-	87	40.400	Stegastes_partitus
ENSLOCG00000003746	lsm14b	99	58.505	ENSSPAG00000020915	lsm14b	99	56.443	Stegastes_partitus
ENSLOCG00000003746	lsm14b	99	62.690	ENSSSCG00000026052	LSM14B	100	48.089	Sus_scrofa
ENSLOCG00000003746	lsm14b	96	61.972	ENSTGUG00000007884	LSM14B	99	62.817	Taeniopygia_guttata
ENSLOCG00000003746	lsm14b	93	53.600	ENSTRUG00000001529	LSM14B	91	52.989	Takifugu_rubripes
ENSLOCG00000003746	lsm14b	99	57.106	ENSTRUG00000011354	lsm14b	90	57.143	Takifugu_rubripes
ENSLOCG00000003746	lsm14b	91	57.808	ENSTNIG00000002445	lsm14b	90	57.341	Tetraodon_nigroviridis
ENSLOCG00000003746	lsm14b	83	92.308	ENSTTRG00000011043	LSM14B	82	92.308	Tursiops_truncatus
ENSLOCG00000003746	lsm14b	96	61.143	ENSUAMG00000025298	LSM14B	93	60.111	Ursus_americanus
ENSLOCG00000003746	lsm14b	96	61.143	ENSUMAG00000000480	LSM14B	93	60.111	Ursus_maritimus
ENSLOCG00000003746	lsm14b	96	60.857	ENSVVUG00000015920	LSM14B	98	61.143	Vulpes_vulpes
ENSLOCG00000003746	lsm14b	86	63.422	ENSXETG00000001997	lsm14b	100	63.717	Xenopus_tropicalis
ENSLOCG00000003746	lsm14b	99	52.972	ENSXMAG00000010013	lsm14b	99	52.713	Xiphophorus_maculatus