EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000003899 (Gene tree)
Gene ID: 102695936
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 19572 bases
Position: chrLG12:6742108-6761679
Accession: 102695936
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004663	SF3b1	PF08920.10	1.1e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004671	-	4570	XM_006636286	ENSLOCP00000004663	1317 (aa)	XP_006636349	W5M8F5

Gene Model

Click here to download ENSLOCG00000003899's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000003899's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000003899	sf3b1	100	94.765	ENSG00000115524	SF3B1	100	94.917	Homo_sapiens
ENSLOCG00000003899	sf3b1	100	95.537	ENSAPOG00000011894	sf3b1	100	95.537	Acanthochromis_polyacanthus
ENSLOCG00000003899	sf3b1	99	94.805	ENSAMEG00000013809	SF3B1	99	94.958	Ailuropoda_melanoleuca
ENSLOCG00000003899	sf3b1	100	94.761	ENSACIG00000020910	sf3b1	97	94.761	Amphilophus_citrinellus
ENSLOCG00000003899	sf3b1	100	95.537	ENSAOCG00000004478	sf3b1	100	95.537	Amphiprion_ocellaris
ENSLOCG00000003899	sf3b1	100	95.537	ENSAPEG00000012937	sf3b1	100	95.537	Amphiprion_percula
ENSLOCG00000003899	sf3b1	100	95.761	ENSATEG00000020435	sf3b1	100	95.761	Anabas_testudineus
ENSLOCG00000003899	sf3b1	99	94.878	ENSAPLG00000003993	SF3B1	99	94.878	Anas_platyrhynchos
ENSLOCG00000003899	sf3b1	100	94.989	ENSACAG00000009612	SF3B1	100	94.989	Anolis_carolinensis
ENSLOCG00000003899	sf3b1	100	94.765	ENSANAG00000021577	SF3B1	100	96.147	Aotus_nancymaae
ENSLOCG00000003899	sf3b1	100	94.322	ENSACLG00000023470	sf3b1	100	94.322	Astatotilapia_calliptera
ENSLOCG00000003899	sf3b1	100	95.764	ENSAMXG00000002219	sf3b1	100	95.764	Astyanax_mexicanus
ENSLOCG00000003899	sf3b1	100	94.765	ENSBTAG00000008915	SF3B1	100	94.917	Bos_taurus
ENSLOCG00000003899	sf3b1	98	66.317	WBGene00011605	sftb-1	97	66.167	Caenorhabditis_elegans
ENSLOCG00000003899	sf3b1	100	94.765	ENSCJAG00000003902	SF3B1	100	94.917	Callithrix_jacchus
ENSLOCG00000003899	sf3b1	100	94.765	ENSCAFG00000010826	SF3B1	100	94.917	Canis_familiaris
ENSLOCG00000003899	sf3b1	100	94.765	ENSCAFG00020004750	SF3B1	100	94.917	Canis_lupus_dingo
ENSLOCG00000003899	sf3b1	100	94.765	ENSCHIG00000015226	SF3B1	100	94.917	Capra_hircus
ENSLOCG00000003899	sf3b1	100	94.689	ENSTSYG00000009214	SF3B1	100	94.841	Carlito_syrichta
ENSLOCG00000003899	sf3b1	99	94.597	ENSCAPG00000006547	SF3B1	99	94.749	Cavia_aperea
ENSLOCG00000003899	sf3b1	99	94.725	ENSCPOG00000009353	SF3B1	100	94.878	Cavia_porcellus
ENSLOCG00000003899	sf3b1	100	94.765	ENSCCAG00000020506	SF3B1	100	94.917	Cebus_capucinus
ENSLOCG00000003899	sf3b1	100	94.765	ENSCATG00000035735	SF3B1	100	94.917	Cercocebus_atys
ENSLOCG00000003899	sf3b1	99	94.729	ENSCLAG00000014767	SF3B1	99	94.882	Chinchilla_lanigera
ENSLOCG00000003899	sf3b1	100	94.765	ENSCSAG00000011505	SF3B1	100	94.917	Chlorocebus_sabaeus
ENSLOCG00000003899	sf3b1	76	93.158	ENSCHOG00000009860	SF3B1	76	93.158	Choloepus_hoffmanni
ENSLOCG00000003899	sf3b1	100	95.065	ENSCPBG00000021902	SF3B1	100	95.065	Chrysemys_picta_bellii
ENSLOCG00000003899	sf3b1	69	78.247	ENSCING00000002558	-	99	78.446	Ciona_intestinalis
ENSLOCG00000003899	sf3b1	99	79.805	ENSCSAVG00000002559	-	99	79.730	Ciona_savignyi
ENSLOCG00000003899	sf3b1	100	94.765	ENSCANG00000029415	SF3B1	100	94.917	Colobus_angolensis_palliatus
ENSLOCG00000003899	sf3b1	100	94.765	ENSCGRG00001016990	Sf3b1	100	94.917	Cricetulus_griseus_chok1gshd
ENSLOCG00000003899	sf3b1	100	94.765	ENSCGRG00000005301	Sf3b1	100	94.917	Cricetulus_griseus_crigri
ENSLOCG00000003899	sf3b1	100	91.116	ENSCSEG00000003860	sf3b1	100	91.116	Cynoglossus_semilaevis
ENSLOCG00000003899	sf3b1	96	95.433	ENSCVAG00000003680	sf3b1	99	95.433	Cyprinodon_variegatus
ENSLOCG00000003899	sf3b1	100	95.083	ENSDARG00000056138	sf3b1	100	95.083	Danio_rerio
ENSLOCG00000003899	sf3b1	100	94.841	ENSDNOG00000011754	SF3B1	100	94.992	Dasypus_novemcinctus
ENSLOCG00000003899	sf3b1	99	92.661	ENSDORG00000002399	Sf3b1	100	92.508	Dipodomys_ordii
ENSLOCG00000003899	sf3b1	100	75.567	FBgn0031266	Sf3b1	100	75.567	Drosophila_melanogaster
ENSLOCG00000003899	sf3b1	83	93.498	ENSETEG00000009188	SF3B1	100	93.681	Echinops_telfairi
ENSLOCG00000003899	sf3b1	99	85.866	ENSEBUG00000004325	sf3b1	100	88.630	Eptatretus_burgeri
ENSLOCG00000003899	sf3b1	100	94.765	ENSEASG00005020159	SF3B1	98	94.917	Equus_asinus_asinus
ENSLOCG00000003899	sf3b1	100	94.765	ENSECAG00000021657	SF3B1	98	94.917	Equus_caballus
ENSLOCG00000003899	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSLOCG00000003899	sf3b1	100	95.561	ENSELUG00000005977	sf3b1	98	95.561	Esox_lucius
ENSLOCG00000003899	sf3b1	100	94.765	ENSFCAG00000005038	SF3B1	100	94.917	Felis_catus
ENSLOCG00000003899	sf3b1	99	94.801	ENSFALG00000004281	SF3B1	99	94.801	Ficedula_albicollis
ENSLOCG00000003899	sf3b1	100	94.765	ENSFDAG00000017510	SF3B1	100	94.917	Fukomys_damarensis
ENSLOCG00000003899	sf3b1	100	94.402	ENSFHEG00000014333	sf3b1	100	94.402	Fundulus_heteroclitus
ENSLOCG00000003899	sf3b1	100	94.917	ENSGMOG00000006773	sf3b1	100	95.296	Gadus_morhua
ENSLOCG00000003899	sf3b1	100	94.913	ENSGALG00000008038	SF3B1	100	94.913	Gallus_gallus
ENSLOCG00000003899	sf3b1	100	93.627	ENSGAFG00000000704	sf3b1	100	95.238	Gambusia_affinis
ENSLOCG00000003899	sf3b1	100	95.068	ENSGACG00000008839	sf3b1	100	95.068	Gasterosteus_aculeatus
ENSLOCG00000003899	sf3b1	100	94.419	ENSGAGG00000017478	SF3B1	100	94.419	Gopherus_agassizii
ENSLOCG00000003899	sf3b1	99	89.695	ENSGGOG00000009264	SF3B1	99	90.069	Gorilla_gorilla
ENSLOCG00000003899	sf3b1	99	94.390	ENSHBUG00000007705	sf3b1	99	94.390	Haplochromis_burtoni
ENSLOCG00000003899	sf3b1	99	94.729	ENSHGLG00000008285	-	99	94.882	Heterocephalus_glaber_female
ENSLOCG00000003899	sf3b1	99	92.743	ENSHGLG00100005535	-	99	92.895	Heterocephalus_glaber_male
ENSLOCG00000003899	sf3b1	100	94.357	ENSHCOG00000016775	sf3b1	100	94.357	Hippocampus_comes
ENSLOCG00000003899	sf3b1	100	95.310	ENSIPUG00000013171	sf3b1	100	95.310	Ictalurus_punctatus
ENSLOCG00000003899	sf3b1	100	94.765	ENSSTOG00000011034	SF3B1	100	94.917	Ictidomys_tridecemlineatus
ENSLOCG00000003899	sf3b1	99	94.632	ENSJJAG00000010903	Sf3b1	99	94.785	Jaculus_jaculus
ENSLOCG00000003899	sf3b1	100	94.566	ENSKMAG00000004009	sf3b1	100	94.566	Kryptolebias_marmoratus
ENSLOCG00000003899	sf3b1	100	95.216	ENSLBEG00000022208	sf3b1	100	95.216	Labrus_bergylta
ENSLOCG00000003899	sf3b1	99	91.578	ENSLACG00000014832	SF3B1	99	91.578	Latimeria_chalumnae
ENSLOCG00000003899	sf3b1	100	94.765	ENSLAFG00000001956	SF3B1	100	94.917	Loxodonta_africana
ENSLOCG00000003899	sf3b1	99	94.729	ENSMMUG00000022430	SF3B1	99	94.882	Macaca_mulatta
ENSLOCG00000003899	sf3b1	100	94.765	ENSMNEG00000042333	SF3B1	100	96.147	Macaca_nemestrina
ENSLOCG00000003899	sf3b1	94	89.686	ENSMLEG00000026141	SF3B1	98	90.128	Mandrillus_leucophaeus
ENSLOCG00000003899	sf3b1	100	95.609	ENSMAMG00000010241	sf3b1	100	95.609	Mastacembelus_armatus
ENSLOCG00000003899	sf3b1	100	94.322	ENSMZEG00005021254	sf3b1	100	94.322	Maylandia_zebra
ENSLOCG00000003899	sf3b1	99	94.266	ENSMGAG00000007017	SF3B1	99	94.266	Meleagris_gallopavo
ENSLOCG00000003899	sf3b1	99	90.527	ENSMAUG00000009071	Sf3b1	99	90.680	Mesocricetus_auratus
ENSLOCG00000003899	sf3b1	100	94.689	ENSMICG00000013879	SF3B1	100	94.841	Microcebus_murinus
ENSLOCG00000003899	sf3b1	99	90.458	ENSMOCG00000000455	Sf3b1	99	90.458	Microtus_ochrogaster
ENSLOCG00000003899	sf3b1	84	95.281	ENSMMOG00000000475	sf3b1	100	95.281	Mola_mola
ENSLOCG00000003899	sf3b1	100	94.310	ENSMODG00000012275	SF3B1	100	94.461	Monodelphis_domestica
ENSLOCG00000003899	sf3b1	100	95.382	ENSMALG00000017211	sf3b1	100	95.382	Monopterus_albus
ENSLOCG00000003899	sf3b1	100	94.765	MGP_CAROLIEiJ_G0014141	Sf3b1	100	94.917	Mus_caroli
ENSLOCG00000003899	sf3b1	100	94.765	ENSMUSG00000025982	Sf3b1	100	94.917	Mus_musculus
ENSLOCG00000003899	sf3b1	100	94.765	MGP_SPRETEiJ_G0014947	Sf3b1	100	94.917	Mus_spretus
ENSLOCG00000003899	sf3b1	100	94.765	ENSMPUG00000007799	SF3B1	100	94.917	Mustela_putorius_furo
ENSLOCG00000003899	sf3b1	100	93.627	ENSMLUG00000000840	SF3B1	100	93.778	Myotis_lucifugus
ENSLOCG00000003899	sf3b1	99	94.444	ENSNGAG00000021884	-	100	94.597	Nannospalax_galili
ENSLOCG00000003899	sf3b1	100	90.212	ENSNBRG00000015816	sf3b1	100	90.212	Neolamprologus_brichardi
ENSLOCG00000003899	sf3b1	100	94.765	ENSNLEG00000006861	SF3B1	100	94.917	Nomascus_leucogenys
ENSLOCG00000003899	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSLOCG00000003899	sf3b1	100	81.366	ENSOPRG00000008596	SF3B1	100	82.169	Ochotona_princeps
ENSLOCG00000003899	sf3b1	100	94.765	ENSODEG00000011153	-	100	94.917	Octodon_degus
ENSLOCG00000003899	sf3b1	100	94.322	ENSONIG00000013758	sf3b1	100	94.322	Oreochromis_niloticus
ENSLOCG00000003899	sf3b1	83	96.596	ENSOCUG00000012722	-	96	96.596	Oryctolagus_cuniculus
ENSLOCG00000003899	sf3b1	100	94.474	ENSORLG00000020219	sf3b1	100	94.474	Oryzias_latipes
ENSLOCG00000003899	sf3b1	100	94.474	ENSORLG00020001746	sf3b1	100	94.474	Oryzias_latipes_hni
ENSLOCG00000003899	sf3b1	64	92.671	ENSORLG00015001759	sf3b1	98	92.671	Oryzias_latipes_hsok
ENSLOCG00000003899	sf3b1	100	94.705	ENSOMEG00000019231	sf3b1	100	94.705	Oryzias_melastigma
ENSLOCG00000003899	sf3b1	100	94.765	ENSOARG00000015374	SF3B1	100	94.917	Ovis_aries
ENSLOCG00000003899	sf3b1	100	94.765	ENSPPAG00000035007	SF3B1	100	94.917	Pan_paniscus
ENSLOCG00000003899	sf3b1	100	94.765	ENSPPRG00000009090	SF3B1	100	94.917	Panthera_pardus
ENSLOCG00000003899	sf3b1	100	94.765	ENSPTIG00000021557	SF3B1	100	94.917	Panthera_tigris_altaica
ENSLOCG00000003899	sf3b1	99	87.424	ENSPTRG00000012771	SF3B1	99	87.576	Pan_troglodytes
ENSLOCG00000003899	sf3b1	100	94.765	ENSPANG00000013417	SF3B1	100	94.917	Papio_anubis
ENSLOCG00000003899	sf3b1	100	97.043	ENSPKIG00000000784	sf3b1	100	97.043	Paramormyrops_kingsleyae
ENSLOCG00000003899	sf3b1	99	93.726	ENSPSIG00000017222	SF3B1	98	93.726	Pelodiscus_sinensis
ENSLOCG00000003899	sf3b1	91	95.394	ENSPMGG00000004330	sf3b1	99	95.394	Periophthalmus_magnuspinnatus
ENSLOCG00000003899	sf3b1	99	94.729	ENSPEMG00000010699	Sf3b1	100	94.882	Peromyscus_maniculatus_bairdii
ENSLOCG00000003899	sf3b1	100	89.653	ENSPMAG00000001311	sf3b1	100	89.955	Petromyzon_marinus
ENSLOCG00000003899	sf3b1	100	94.310	ENSPCIG00000010642	SF3B1	100	94.461	Phascolarctos_cinereus
ENSLOCG00000003899	sf3b1	100	95.238	ENSPFOG00000000073	sf3b1	100	95.238	Poecilia_formosa
ENSLOCG00000003899	sf3b1	100	95.386	ENSPLAG00000002293	sf3b1	100	95.386	Poecilia_latipinna
ENSLOCG00000003899	sf3b1	100	95.310	ENSPMEG00000000446	sf3b1	98	95.310	Poecilia_mexicana
ENSLOCG00000003899	sf3b1	100	95.461	ENSPREG00000019652	sf3b1	100	95.461	Poecilia_reticulata
ENSLOCG00000003899	sf3b1	83	97.516	ENSPPYG00000013044	SF3B1	95	97.516	Pongo_abelii
ENSLOCG00000003899	sf3b1	100	94.613	ENSPCAG00000009292	SF3B1	100	94.765	Procavia_capensis
ENSLOCG00000003899	sf3b1	100	94.689	ENSPCOG00000024074	SF3B1	100	94.841	Propithecus_coquereli
ENSLOCG00000003899	sf3b1	100	94.765	ENSPVAG00000008302	SF3B1	100	94.917	Pteropus_vampyrus
ENSLOCG00000003899	sf3b1	100	94.247	ENSPNYG00000014939	sf3b1	100	94.247	Pundamilia_nyererei
ENSLOCG00000003899	sf3b1	100	95.764	ENSPNAG00000008288	sf3b1	100	95.764	Pygocentrus_nattereri
ENSLOCG00000003899	sf3b1	100	94.765	ENSRNOG00000013516	Sf3b1	100	94.917	Rattus_norvegicus
ENSLOCG00000003899	sf3b1	99	91.033	ENSRBIG00000026096	SF3B1	100	91.185	Rhinopithecus_bieti
ENSLOCG00000003899	sf3b1	100	94.765	ENSRROG00000031308	SF3B1	100	94.917	Rhinopithecus_roxellana
ENSLOCG00000003899	sf3b1	100	94.765	ENSSBOG00000020080	SF3B1	100	94.917	Saimiri_boliviensis_boliviensis
ENSLOCG00000003899	sf3b1	100	94.310	ENSSHAG00000017564	SF3B1	100	94.461	Sarcophilus_harrisii
ENSLOCG00000003899	sf3b1	100	96.369	ENSSFOG00015021535	sf3b1	100	96.369	Scleropages_formosus
ENSLOCG00000003899	sf3b1	99	94.717	ENSSMAG00000013977	sf3b1	99	94.792	Scophthalmus_maximus
ENSLOCG00000003899	sf3b1	100	95.685	ENSSDUG00000017422	sf3b1	100	95.685	Seriola_dumerili
ENSLOCG00000003899	sf3b1	100	95.609	ENSSLDG00000019495	sf3b1	100	95.609	Seriola_lalandi_dorsalis
ENSLOCG00000003899	sf3b1	75	99.296	ENSSARG00000007016	SF3B1	76	99.296	Sorex_araneus
ENSLOCG00000003899	sf3b1	100	94.837	ENSSPUG00000000410	SF3B1	100	94.837	Sphenodon_punctatus
ENSLOCG00000003899	sf3b1	100	95.534	ENSSPAG00000010451	sf3b1	99	95.534	Stegastes_partitus
ENSLOCG00000003899	sf3b1	91	94.181	ENSSSCG00000016075	SF3B1	100	96.147	Sus_scrofa
ENSLOCG00000003899	sf3b1	100	94.913	ENSTGUG00000010553	SF3B1	100	94.913	Taeniopygia_guttata
ENSLOCG00000003899	sf3b1	100	95.079	ENSTRUG00000015534	sf3b1	100	95.079	Takifugu_rubripes
ENSLOCG00000003899	sf3b1	84	97.526	ENSTBEG00000008714	SF3B1	93	97.526	Tupaia_belangeri
ENSLOCG00000003899	sf3b1	92	93.679	ENSTTRG00000003414	SF3B1	92	93.679	Tursiops_truncatus
ENSLOCG00000003899	sf3b1	94	84.109	ENSUAMG00000018506	SF3B1	99	98.381	Ursus_americanus
ENSLOCG00000003899	sf3b1	100	94.765	ENSUMAG00000020945	SF3B1	100	94.917	Ursus_maritimus
ENSLOCG00000003899	sf3b1	100	87.405	ENSVPAG00000005798	SF3B1	100	87.557	Vicugna_pacos
ENSLOCG00000003899	sf3b1	100	94.765	ENSVVUG00000025948	SF3B1	95	94.917	Vulpes_vulpes
ENSLOCG00000003899	sf3b1	100	93.399	ENSXETG00000013339	sf3b1	100	93.399	Xenopus_tropicalis
ENSLOCG00000003899	sf3b1	100	91.426	ENSXCOG00000018086	sf3b1	100	91.502	Xiphophorus_couchianus
ENSLOCG00000003899	sf3b1	100	95.310	ENSXMAG00000007369	sf3b1	100	95.556	Xiphophorus_maculatus