EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000004041 (Gene tree)
Gene ID: 102682771
Gene Symbol: trnau1apa
Alias: trnau1ap|zgc:110606
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 8363 bases
Position: chrLG6:7366677-7375039
Accession: 102682771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004837	RRM_1	PF00076.22	1.2e-23	1	2
ENSLOCP00000004837	RRM_1	PF00076.22	1.2e-23	2	2
ENSLOCP00000004825	RRM_1	PF00076.22	1.2e-23	1	2
ENSLOCP00000004825	RRM_1	PF00076.22	1.2e-23	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004845	-	2738	XM_006631406	ENSLOCP00000004837	289 (aa)	XP_006631469	W5M8X8
ENSLOCT00000004833	-	2756	-	ENSLOCP00000004825	295 (aa)	-	W5M8W6

Gene Model

Click here to download ENSLOCG00000004041's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004041's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000004041	trnau1apa	99	47.910	ENSLOCG00000013175	trnau1apb	97	48.553

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004041	trnau1apa	99	70.979	ENSG00000180098	TRNAU1AP	99	72.028	Homo_sapiens
ENSLOCG00000004041	trnau1apa	97	60.274	ENSAPOG00000007148	TRNAU1AP	94	61.168	Acanthochromis_polyacanthus
ENSLOCG00000004041	trnau1apa	99	70.280	ENSAMEG00000011367	TRNAU1AP	99	71.329	Ailuropoda_melanoleuca
ENSLOCG00000004041	trnau1apa	92	75.000	ENSACIG00000004161	trnau1apa	93	75.000	Amphilophus_citrinellus
ENSLOCG00000004041	trnau1apa	97	60.616	ENSAOCG00000008056	trnau1apa	94	61.644	Amphiprion_ocellaris
ENSLOCG00000004041	trnau1apa	97	60.616	ENSAPEG00000008868	trnau1apa	94	61.644	Amphiprion_percula
ENSLOCG00000004041	trnau1apa	99	58.842	ENSATEG00000012140	trnau1apa	98	60.450	Anabas_testudineus
ENSLOCG00000004041	trnau1apa	94	71.062	ENSAPLG00000002606	TRNAU1AP	99	71.795	Anas_platyrhynchos
ENSLOCG00000004041	trnau1apa	74	46.047	ENSACAG00000004205	-	81	46.047	Anolis_carolinensis
ENSLOCG00000004041	trnau1apa	97	61.702	ENSACAG00000003995	-	97	62.057	Anolis_carolinensis
ENSLOCG00000004041	trnau1apa	99	70.979	ENSANAG00000018976	TRNAU1AP	99	72.028	Aotus_nancymaae
ENSLOCG00000004041	trnau1apa	99	59.866	ENSACLG00000018515	trnau1apa	98	60.201	Astatotilapia_calliptera
ENSLOCG00000004041	trnau1apa	97	56.643	ENSAMXG00000013750	trnau1apa	92	56.643	Astyanax_mexicanus
ENSLOCG00000004041	trnau1apa	95	69.231	ENSAMXG00000029240	-	97	69.231	Astyanax_mexicanus
ENSLOCG00000004041	trnau1apa	99	70.629	ENSBTAG00000010393	TRNAU1AP	99	71.678	Bos_taurus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSCJAG00000009717	TRNAU1AP	99	72.028	Callithrix_jacchus
ENSLOCG00000004041	trnau1apa	99	71.329	ENSCAFG00000011735	TRNAU1AP	99	72.378	Canis_familiaris
ENSLOCG00000004041	trnau1apa	99	71.329	ENSCAFG00020023584	TRNAU1AP	99	72.378	Canis_lupus_dingo
ENSLOCG00000004041	trnau1apa	99	70.629	ENSCHIG00000023215	TRNAU1AP	99	71.678	Capra_hircus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSTSYG00000003506	TRNAU1AP	99	72.028	Carlito_syrichta
ENSLOCG00000004041	trnau1apa	99	71.329	ENSCPOG00000001925	TRNAU1AP	99	72.378	Cavia_porcellus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSCCAG00000037506	TRNAU1AP	99	72.028	Cebus_capucinus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSCATG00000044617	TRNAU1AP	99	72.028	Cercocebus_atys
ENSLOCG00000004041	trnau1apa	99	71.329	ENSCLAG00000008223	TRNAU1AP	99	72.378	Chinchilla_lanigera
ENSLOCG00000004041	trnau1apa	99	70.979	ENSCSAG00000001014	TRNAU1AP	99	72.028	Chlorocebus_sabaeus
ENSLOCG00000004041	trnau1apa	95	70.803	ENSCPBG00000000121	TRNAU1AP	99	72.364	Chrysemys_picta_bellii
ENSLOCG00000004041	trnau1apa	57	50.303	ENSCSAVG00000011781	-	87	50.303	Ciona_savignyi
ENSLOCG00000004041	trnau1apa	99	62.587	ENSCANG00000041949	TRNAU1AP	99	70.787	Colobus_angolensis_palliatus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSCGRG00001004713	Trnau1ap	99	72.028	Cricetulus_griseus_chok1gshd
ENSLOCG00000004041	trnau1apa	99	70.979	ENSCGRG00000014532	Trnau1ap	99	72.028	Cricetulus_griseus_crigri
ENSLOCG00000004041	trnau1apa	99	59.804	ENSCSEG00000006663	trnau1apa	98	61.688	Cynoglossus_semilaevis
ENSLOCG00000004041	trnau1apa	99	57.237	ENSCVAG00000018069	trnau1apa	99	57.093	Cyprinodon_variegatus
ENSLOCG00000004041	trnau1apa	99	52.159	ENSDARG00000101323	trnau1apa	94	50.809	Danio_rerio
ENSLOCG00000004041	trnau1apa	60	60.465	ENSDNOG00000047959	-	92	59.322	Dasypus_novemcinctus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSDNOG00000033009	TRNAU1AP	99	72.028	Dasypus_novemcinctus
ENSLOCG00000004041	trnau1apa	98	66.078	ENSDORG00000006349	Trnau1ap	99	71.121	Dipodomys_ordii
ENSLOCG00000004041	trnau1apa	96	37.346	FBgn0031607	CG15440	96	36.728	Drosophila_melanogaster
ENSLOCG00000004041	trnau1apa	84	67.623	ENSETEG00000012594	TRNAU1AP	98	68.852	Echinops_telfairi
ENSLOCG00000004041	trnau1apa	99	70.979	ENSEASG00005010062	TRNAU1AP	99	72.028	Equus_asinus_asinus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSECAG00000012980	TRNAU1AP	99	72.028	Equus_caballus
ENSLOCG00000004041	trnau1apa	99	62.458	ENSELUG00000017686	trnau1apa	98	63.123	Esox_lucius
ENSLOCG00000004041	trnau1apa	97	75.000	ENSELUG00000022790	-	95	75.000	Esox_lucius
ENSLOCG00000004041	trnau1apa	99	70.979	ENSFCAG00000013401	TRNAU1AP	99	72.028	Felis_catus
ENSLOCG00000004041	trnau1apa	95	70.545	ENSFALG00000001371	TRNAU1AP	99	72.364	Ficedula_albicollis
ENSLOCG00000004041	trnau1apa	99	71.329	ENSFDAG00000018599	TRNAU1AP	99	72.378	Fukomys_damarensis
ENSLOCG00000004041	trnau1apa	80	61.789	ENSFHEG00000018232	trnau1apa	83	61.044	Fundulus_heteroclitus
ENSLOCG00000004041	trnau1apa	98	55.556	ENSGMOG00000016508	trnau1apa	95	56.552	Gadus_morhua
ENSLOCG00000004041	trnau1apa	99	68.881	ENSGALG00000001310	-	99	70.629	Gallus_gallus
ENSLOCG00000004041	trnau1apa	74	44.726	ENSGALG00000012721	C2H6orf52	86	44.156	Gallus_gallus
ENSLOCG00000004041	trnau1apa	80	61.250	ENSGAFG00000004928	trnau1apa	90	62.500	Gambusia_affinis
ENSLOCG00000004041	trnau1apa	98	61.092	ENSGACG00000001443	trnau1apa	95	62.199	Gasterosteus_aculeatus
ENSLOCG00000004041	trnau1apa	95	71.168	ENSGAGG00000004940	TRNAU1AP	99	72.727	Gopherus_agassizii
ENSLOCG00000004041	trnau1apa	99	70.979	ENSGGOG00000003511	TRNAU1AP	99	72.028	Gorilla_gorilla
ENSLOCG00000004041	trnau1apa	99	70.588	ENSHBUG00000002510	trnau1apa	98	59.211	Haplochromis_burtoni
ENSLOCG00000004041	trnau1apa	99	71.329	ENSHGLG00000010380	TRNAU1AP	99	72.378	Heterocephalus_glaber_female
ENSLOCG00000004041	trnau1apa	99	69.231	ENSHGLG00100012699	TRNAU1AP	99	70.280	Heterocephalus_glaber_male
ENSLOCG00000004041	trnau1apa	98	56.610	ENSHCOG00000014770	trnau1apa	95	56.610	Hippocampus_comes
ENSLOCG00000004041	trnau1apa	99	70.979	ENSSTOG00000000079	TRNAU1AP	99	72.028	Ictidomys_tridecemlineatus
ENSLOCG00000004041	trnau1apa	99	70.629	ENSJJAG00000010128	Trnau1ap	99	71.678	Jaculus_jaculus
ENSLOCG00000004041	trnau1apa	96	59.862	ENSKMAG00000001230	trnau1apa	94	60.208	Kryptolebias_marmoratus
ENSLOCG00000004041	trnau1apa	96	59.524	ENSLBEG00000011683	trnau1apa	98	58.576	Labrus_bergylta
ENSLOCG00000004041	trnau1apa	99	62.847	ENSLACG00000005541	TRNAU1AP	99	63.194	Latimeria_chalumnae
ENSLOCG00000004041	trnau1apa	99	71.329	ENSLAFG00000007628	TRNAU1AP	99	72.378	Loxodonta_africana
ENSLOCG00000004041	trnau1apa	99	70.979	ENSMFAG00000043751	TRNAU1AP	99	72.028	Macaca_fascicularis
ENSLOCG00000004041	trnau1apa	99	70.979	ENSMMUG00000006561	TRNAU1AP	99	72.028	Macaca_mulatta
ENSLOCG00000004041	trnau1apa	99	70.979	ENSMNEG00000044201	TRNAU1AP	99	72.028	Macaca_nemestrina
ENSLOCG00000004041	trnau1apa	99	70.979	ENSMLEG00000015649	TRNAU1AP	99	72.028	Mandrillus_leucophaeus
ENSLOCG00000004041	trnau1apa	99	59.677	ENSMAMG00000001247	trnau1apa	99	61.017	Mastacembelus_armatus
ENSLOCG00000004041	trnau1apa	99	59.866	ENSMZEG00005017722	trnau1apa	98	60.201	Maylandia_zebra
ENSLOCG00000004041	trnau1apa	97	70.609	ENSMGAG00000002105	TRNAU1AP	99	71.326	Meleagris_gallopavo
ENSLOCG00000004041	trnau1apa	99	70.979	ENSMICG00000008386	TRNAU1AP	99	72.028	Microcebus_murinus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSMOCG00000011189	Trnau1ap	99	72.028	Microtus_ochrogaster
ENSLOCG00000004041	trnau1apa	96	56.272	ENSMMOG00000012107	trnau1apa	92	56.584	Mola_mola
ENSLOCG00000004041	trnau1apa	99	71.228	ENSMODG00000010927	TRNAU1AP	98	71.228	Monodelphis_domestica
ENSLOCG00000004041	trnau1apa	99	58.766	ENSMALG00000016778	trnau1apa	99	60.714	Monopterus_albus
ENSLOCG00000004041	trnau1apa	99	70.979	MGP_CAROLIEiJ_G0026563	Trnau1ap	99	72.222	Mus_caroli
ENSLOCG00000004041	trnau1apa	99	70.979	ENSMUSG00000028898	Trnau1ap	99	72.222	Mus_musculus
ENSLOCG00000004041	trnau1apa	99	70.979	MGP_PahariEiJ_G0028896	Trnau1ap	99	72.222	Mus_pahari
ENSLOCG00000004041	trnau1apa	99	70.979	MGP_SPRETEiJ_G0027544	Trnau1ap	99	72.222	Mus_spretus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSMPUG00000015511	TRNAU1AP	99	72.028	Mustela_putorius_furo
ENSLOCG00000004041	trnau1apa	99	70.979	ENSMLUG00000012586	TRNAU1AP	99	72.028	Myotis_lucifugus
ENSLOCG00000004041	trnau1apa	99	71.329	ENSNGAG00000015881	Trnau1ap	99	72.378	Nannospalax_galili
ENSLOCG00000004041	trnau1apa	98	53.767	ENSNBRG00000001758	trnau1apa	97	55.290	Neolamprologus_brichardi
ENSLOCG00000004041	trnau1apa	99	70.979	ENSNLEG00000009822	TRNAU1AP	99	72.028	Nomascus_leucogenys
ENSLOCG00000004041	trnau1apa	96	70.863	ENSMEUG00000006117	TRNAU1AP	99	70.863	Notamacropus_eugenii
ENSLOCG00000004041	trnau1apa	59	82.716	ENSOPRG00000007084	-	65	81.373	Ochotona_princeps
ENSLOCG00000004041	trnau1apa	99	71.329	ENSODEG00000002970	TRNAU1AP	99	72.378	Octodon_degus
ENSLOCG00000004041	trnau1apa	81	58.197	ENSONIG00000004715	trnau1apa	90	61.905	Oreochromis_niloticus
ENSLOCG00000004041	trnau1apa	99	60.000	ENSOANG00000005325	-	98	60.702	Ornithorhynchus_anatinus
ENSLOCG00000004041	trnau1apa	99	55.944	ENSOCUG00000002353	-	99	55.944	Oryctolagus_cuniculus
ENSLOCG00000004041	trnau1apa	88	59.055	ENSOCUG00000006834	-	98	59.055	Oryctolagus_cuniculus
ENSLOCG00000004041	trnau1apa	99	69.580	ENSOCUG00000011704	-	99	70.629	Oryctolagus_cuniculus
ENSLOCG00000004041	trnau1apa	97	59.375	ENSORLG00000010428	trnau1apa	94	58.865	Oryzias_latipes
ENSLOCG00000004041	trnau1apa	97	59.375	ENSORLG00020000926	trnau1ap	94	58.333	Oryzias_latipes_hni
ENSLOCG00000004041	trnau1apa	97	59.375	ENSORLG00015009858	trnau1ap	94	58.333	Oryzias_latipes_hsok
ENSLOCG00000004041	trnau1apa	97	59.028	ENSOMEG00000007873	trnau1apa	94	59.028	Oryzias_melastigma
ENSLOCG00000004041	trnau1apa	99	70.979	ENSOGAG00000002274	TRNAU1AP	99	72.028	Otolemur_garnettii
ENSLOCG00000004041	trnau1apa	99	70.629	ENSOARG00000002843	TRNAU1AP	99	71.678	Ovis_aries
ENSLOCG00000004041	trnau1apa	99	70.979	ENSPPAG00000033927	TRNAU1AP	99	72.028	Pan_paniscus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSPPRG00000004416	TRNAU1AP	99	72.028	Panthera_pardus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSPTIG00000016677	TRNAU1AP	99	72.028	Panthera_tigris_altaica
ENSLOCG00000004041	trnau1apa	91	59.623	ENSPTRG00000000434	-	94	59.091	Pan_troglodytes
ENSLOCG00000004041	trnau1apa	99	70.979	ENSPANG00000016019	TRNAU1AP	99	72.028	Papio_anubis
ENSLOCG00000004041	trnau1apa	98	81.319	ENSPKIG00000022205	-	99	82.222	Paramormyrops_kingsleyae
ENSLOCG00000004041	trnau1apa	100	61.204	ENSPKIG00000015511	trnau1apa	96	61.204	Paramormyrops_kingsleyae
ENSLOCG00000004041	trnau1apa	95	72.364	ENSPSIG00000006864	TRNAU1AP	99	73.091	Pelodiscus_sinensis
ENSLOCG00000004041	trnau1apa	94	61.172	ENSPMGG00000023893	trnau1apa	90	61.172	Periophthalmus_magnuspinnatus
ENSLOCG00000004041	trnau1apa	99	70.629	ENSPEMG00000007877	Trnau1ap	99	71.678	Peromyscus_maniculatus_bairdii
ENSLOCG00000004041	trnau1apa	60	53.714	ENSPMAG00000000592	trnau1apa	96	53.714	Petromyzon_marinus
ENSLOCG00000004041	trnau1apa	78	54.585	ENSPMAG00000005934	trnau1apa	98	53.778	Petromyzon_marinus
ENSLOCG00000004041	trnau1apa	96	59.310	ENSPFOG00000008100	trnau1apa	94	59.310	Poecilia_formosa
ENSLOCG00000004041	trnau1apa	92	58.273	ENSPLAG00000010236	trnau1apa	93	58.273	Poecilia_latipinna
ENSLOCG00000004041	trnau1apa	96	57.439	ENSPMEG00000016387	trnau1apa	89	59.779	Poecilia_mexicana
ENSLOCG00000004041	trnau1apa	87	65.169	ENSPREG00000019821	trnau1apa	89	65.169	Poecilia_reticulata
ENSLOCG00000004041	trnau1apa	89	62.692	ENSPPYG00000001639	-	99	63.846	Pongo_abelii
ENSLOCG00000004041	trnau1apa	99	70.979	ENSPCOG00000027712	-	99	72.028	Propithecus_coquereli
ENSLOCG00000004041	trnau1apa	98	58.511	ENSPCOG00000023470	-	99	61.348	Propithecus_coquereli
ENSLOCG00000004041	trnau1apa	99	70.979	ENSPVAG00000017214	TRNAU1AP	99	72.028	Pteropus_vampyrus
ENSLOCG00000004041	trnau1apa	99	63.235	ENSPNYG00000010130	trnau1apa	98	59.211	Pundamilia_nyererei
ENSLOCG00000004041	trnau1apa	97	52.069	ENSPNAG00000024905	trnau1apa	92	51.546	Pygocentrus_nattereri
ENSLOCG00000004041	trnau1apa	93	65.185	ENSRNOG00000055344	Trnau1ap	91	66.296	Rattus_norvegicus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSRBIG00000029083	TRNAU1AP	99	72.028	Rhinopithecus_bieti
ENSLOCG00000004041	trnau1apa	99	70.979	ENSRROG00000029128	TRNAU1AP	99	72.028	Rhinopithecus_roxellana
ENSLOCG00000004041	trnau1apa	99	70.979	ENSSBOG00000021299	TRNAU1AP	99	72.028	Saimiri_boliviensis_boliviensis
ENSLOCG00000004041	trnau1apa	99	71.228	ENSSHAG00000008108	TRNAU1AP	98	71.228	Sarcophilus_harrisii
ENSLOCG00000004041	trnau1apa	99	55.556	ENSSMAG00000020851	trnau1apa	98	58.497	Scophthalmus_maximus
ENSLOCG00000004041	trnau1apa	97	60.678	ENSSDUG00000011734	trnau1apa	98	59.416	Seriola_dumerili
ENSLOCG00000004041	trnau1apa	97	50.896	ENSSLDG00000012101	trnau1apa	92	52.143	Seriola_lalandi_dorsalis
ENSLOCG00000004041	trnau1apa	97	71.326	ENSSARG00000007536	TRNAU1AP	99	72.401	Sorex_araneus
ENSLOCG00000004041	trnau1apa	99	68.070	ENSSPUG00000010400	-	99	68.531	Sphenodon_punctatus
ENSLOCG00000004041	trnau1apa	62	65.730	ENSSPUG00000010415	-	99	65.730	Sphenodon_punctatus
ENSLOCG00000004041	trnau1apa	99	60.066	ENSSPAG00000005029	trnau1apa	98	60.396	Stegastes_partitus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSSSCG00000030284	TRNAU1AP	99	72.028	Sus_scrofa
ENSLOCG00000004041	trnau1apa	97	70.251	ENSTGUG00000000735	-	99	72.043	Taeniopygia_guttata
ENSLOCG00000004041	trnau1apa	67	54.082	ENSTGUG00000005908	-	98	53.571	Taeniopygia_guttata
ENSLOCG00000004041	trnau1apa	99	57.285	ENSTRUG00000003352	trnau1apa	98	57.285	Takifugu_rubripes
ENSLOCG00000004041	trnau1apa	99	56.579	ENSTNIG00000006129	trnau1apa	98	57.516	Tetraodon_nigroviridis
ENSLOCG00000004041	trnau1apa	84	62.705	ENSTBEG00000008049	-	98	64.344	Tupaia_belangeri
ENSLOCG00000004041	trnau1apa	99	70.979	ENSTTRG00000001854	TRNAU1AP	99	72.028	Tursiops_truncatus
ENSLOCG00000004041	trnau1apa	95	71.273	ENSUAMG00000008789	TRNAU1AP	99	72.364	Ursus_americanus
ENSLOCG00000004041	trnau1apa	99	70.979	ENSUMAG00000011068	TRNAU1AP	99	72.028	Ursus_maritimus
ENSLOCG00000004041	trnau1apa	99	62.671	ENSVPAG00000006778	TRNAU1AP	99	63.699	Vicugna_pacos
ENSLOCG00000004041	trnau1apa	99	70.526	ENSVVUG00000012518	TRNAU1AP	92	71.579	Vulpes_vulpes
ENSLOCG00000004041	trnau1apa	96	58.966	ENSXMAG00000017361	trnau1apa	94	60.000	Xiphophorus_maculatus