EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000004064 (Gene tree)
Gene ID: 102693377
Gene Symbol: -
Alias: -
Full Name: ribosomal RNA processing 1B
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 28647 bases
Position: chrLG17:5019079-5047725
Accession: 102693377
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004881	Nop52	PF05997.12	1.6e-68	1	1
ENSLOCP00000004864	Nop52	PF05997.12	1.6e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004889	-	5841	XM_006638969	ENSLOCP00000004881	729 (aa)	XP_015219092	W5M922
ENSLOCT00000004872	-	5850	-	ENSLOCP00000004864	732 (aa)	-	W5M905

Gene Model

Click here to download ENSLOCG00000004064's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004064's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004064	-	69	48.252	ENSAMEG00000011401	RRP1B	65	50.394	Ailuropoda_melanoleuca
ENSLOCG00000004064	-	50	49.337	ENSAMEG00000011448	RRP1	75	52.199	Ailuropoda_melanoleuca
ENSLOCG00000004064	-	60	60.563	ENSAOCG00000017894	-	99	59.364	Amphiprion_ocellaris
ENSLOCG00000004064	-	69	58.158	ENSATEG00000005045	-	52	57.568	Anabas_testudineus
ENSLOCG00000004064	-	74	49.610	ENSANAG00000034889	RRP1B	69	49.046	Aotus_nancymaae
ENSLOCG00000004064	-	76	45.143	ENSBTAG00000017418	RRP1B	70	51.587	Bos_taurus
ENSLOCG00000004064	-	50	47.527	ENSBTAG00000003981	RRP1	75	50.298	Bos_taurus
ENSLOCG00000004064	-	53	46.649	ENSCJAG00000043205	RRP1	70	49.558	Callithrix_jacchus
ENSLOCG00000004064	-	100	38.295	ENSCJAG00000017077	RRP1B	69	49.725	Callithrix_jacchus
ENSLOCG00000004064	-	50	49.451	ENSCAFG00000010646	RRP1	75	51.765	Canis_familiaris
ENSLOCG00000004064	-	50	49.451	ENSCAFG00020018979	RRP1	75	51.765	Canis_lupus_dingo
ENSLOCG00000004064	-	50	47.527	ENSCHIG00000020948	RRP1	74	50.000	Capra_hircus
ENSLOCG00000004064	-	69	53.383	ENSCHIG00000021519	RRP1B	65	53.125	Capra_hircus
ENSLOCG00000004064	-	73	46.281	ENSCPOG00000002396	RRP1B	65	52.066	Cavia_porcellus
ENSLOCG00000004064	-	53	47.301	ENSCCAG00000029828	RRP1	74	50.142	Cebus_capucinus
ENSLOCG00000004064	-	100	38.228	ENSCCAG00000029384	RRP1B	69	48.485	Cebus_capucinus
ENSLOCG00000004064	-	100	39.359	ENSCATG00000017423	RRP1B	69	48.485	Cercocebus_atys
ENSLOCG00000004064	-	100	37.330	ENSCLAG00000005622	RRP1B	100	37.531	Chinchilla_lanigera
ENSLOCG00000004064	-	54	45.408	ENSCLAG00000011639	RRP1	74	49.851	Chinchilla_lanigera
ENSLOCG00000004064	-	100	39.359	ENSCSAG00000007961	RRP1B	69	48.760	Chlorocebus_sabaeus
ENSLOCG00000004064	-	64	57.224	ENSCPBG00000010310	RRP1B	58	58.252	Chrysemys_picta_bellii
ENSLOCG00000004064	-	100	39.141	ENSCANG00000040952	RRP1B	71	49.444	Colobus_angolensis_palliatus
ENSLOCG00000004064	-	100	37.371	ENSCGRG00001023882	-	75	57.647	Cricetulus_griseus_chok1gshd
ENSLOCG00000004064	-	60	60.218	ENSCSEG00000020711	-	76	60.458	Cynoglossus_semilaevis
ENSLOCG00000004064	-	50	54.223	ENSCVAG00000017568	-	90	55.056	Cyprinodon_variegatus
ENSLOCG00000004064	-	61	53.959	ENSDARG00000103337	rrp1	62	54.203	Danio_rerio
ENSLOCG00000004064	-	72	47.514	ENSDNOG00000032774	RRP1B	63	53.600	Dasypus_novemcinctus
ENSLOCG00000004064	-	56	45.388	ENSDNOG00000019880	RRP1	75	50.440	Dasypus_novemcinctus
ENSLOCG00000004064	-	62	61.446	ENSETEG00000019489	RRP1B	58	61.628	Echinops_telfairi
ENSLOCG00000004064	-	57	45.116	ENSEASG00005001673	RRP1	75	52.071	Equus_asinus_asinus
ENSLOCG00000004064	-	67	51.938	ENSEASG00005001687	RRP1B	63	52.419	Equus_asinus_asinus
ENSLOCG00000004064	-	67	51.938	ENSECAG00000018018	RRP1B	63	52.419	Equus_caballus
ENSLOCG00000004064	-	57	45.116	ENSECAG00000015703	RRP1	75	52.367	Equus_caballus
ENSLOCG00000004064	-	65	58.421	ENSELUG00000015885	-	90	55.769	Esox_lucius
ENSLOCG00000004064	-	100	37.714	ENSFCAG00000010272	RRP1B	65	52.000	Felis_catus
ENSLOCG00000004064	-	50	49.591	ENSFCAG00000008434	RRP1	76	51.603	Felis_catus
ENSLOCG00000004064	-	50	49.322	ENSFDAG00000013728	RRP1	74	52.761	Fukomys_damarensis
ENSLOCG00000004064	-	74	52.601	ENSFHEG00000016314	-	55	54.255	Fundulus_heteroclitus
ENSLOCG00000004064	-	64	58.689	ENSGMOG00000001953	-	71	57.418	Gadus_morhua
ENSLOCG00000004064	-	99	41.835	ENSGACG00000001438	rrp1	69	58.551	Gasterosteus_aculeatus
ENSLOCG00000004064	-	51	44.882	ENSHGLG00000004968	RRP1B	64	52.459	Heterocephalus_glaber_female
ENSLOCG00000004064	-	69	44.633	ENSHGLG00100002232	RRP1B	58	52.459	Heterocephalus_glaber_male
ENSLOCG00000004064	-	68	52.736	ENSHCOG00000018388	-	59	52.792	Hippocampus_comes
ENSLOCG00000004064	-	65	52.267	ENSIPUG00000000673	-	79	48.618	Ictalurus_punctatus
ENSLOCG00000004064	-	54	47.044	ENSSTOG00000011116	RRP1	77	51.662	Ictidomys_tridecemlineatus
ENSLOCG00000004064	-	57	45.192	ENSJJAG00000018886	Rrp1	76	51.662	Jaculus_jaculus
ENSLOCG00000004064	-	65	55.172	ENSKMAG00000005539	rrp1	54	56.164	Kryptolebias_marmoratus
ENSLOCG00000004064	-	53	44.417	ENSLAFG00000022901	RRP1	78	49.008	Loxodonta_africana
ENSLOCG00000004064	-	88	36.222	ENSLAFG00000000766	RRP1B	84	49.580	Loxodonta_africana
ENSLOCG00000004064	-	95	38.514	ENSMLEG00000040044	RRP1B	67	48.438	Mandrillus_leucophaeus
ENSLOCG00000004064	-	55	51.605	ENSMGAG00000014591	RRP1B	51	52.109	Meleagris_gallopavo
ENSLOCG00000004064	-	100	34.805	ENSMAUG00000021508	Rrp1b	68	44.970	Mesocricetus_auratus
ENSLOCG00000004064	-	81	48.958	ENSMICG00000004686	RRP1B	65	53.226	Microcebus_murinus
ENSLOCG00000004064	-	69	47.134	ENSMOCG00000001117	Rrp1b	69	43.195	Microtus_ochrogaster
ENSLOCG00000004064	-	50	52.139	ENSMMOG00000019175	rrp1	95	54.400	Mola_mola
ENSLOCG00000004064	-	53	49.361	ENSMODG00000021036	-	50	54.925	Monodelphis_domestica
ENSLOCG00000004064	-	50	58.152	ENSMALG00000010310	rrp1	92	59.490	Monopterus_albus
ENSLOCG00000004064	-	62	51.825	ENSMUSG00000058392	Rrp1b	60	61.972	Mus_musculus
ENSLOCG00000004064	-	70	52.033	ENSMLUG00000007738	RRP1B	64	52.033	Myotis_lucifugus
ENSLOCG00000004064	-	53	36.910	ENSNGAG00000022344	Rrp1	68	57.895	Nannospalax_galili
ENSLOCG00000004064	-	100	39.605	ENSNLEG00000001490	RRP1B	72	48.209	Nomascus_leucogenys
ENSLOCG00000004064	-	50	61.345	ENSMEUG00000003226	-	57	61.345	Notamacropus_eugenii
ENSLOCG00000004064	-	51	42.703	ENSOPRG00000001319	RRP1	93	46.687	Ochotona_princeps
ENSLOCG00000004064	-	100	34.839	ENSODEG00000013177	RRP1B	65	53.175	Octodon_degus
ENSLOCG00000004064	-	59	58.621	ENSONIG00000004264	rrp1	62	58.621	Oreochromis_niloticus
ENSLOCG00000004064	-	67	50.388	ENSOANG00000006470	RRP1B	62	48.855	Ornithorhynchus_anatinus
ENSLOCG00000004064	-	94	35.352	ENSOCUG00000025931	RRP1B	74	44.561	Oryctolagus_cuniculus
ENSLOCG00000004064	-	74	58.793	ENSORLG00020007199	-	71	58.793	Oryzias_latipes_hni
ENSLOCG00000004064	-	89	57.922	ENSORLG00015004425	-	71	58.747	Oryzias_latipes_hsok
ENSLOCG00000004064	-	76	54.839	ENSOMEG00000016910	-	71	57.778	Oryzias_melastigma
ENSLOCG00000004064	-	50	48.396	ENSOGAG00000006105	RRP1	77	50.289	Otolemur_garnettii
ENSLOCG00000004064	-	64	54.867	ENSOGAG00000009872	RRP1B	70	54.630	Otolemur_garnettii
ENSLOCG00000004064	-	62	52.033	ENSOARG00000011314	RRP1B	61	53.043	Ovis_aries
ENSLOCG00000004064	-	100	38.076	ENSPPRG00000010356	RRP1B	100	38.259	Panthera_pardus
ENSLOCG00000004064	-	53	48.593	ENSPPRG00000010656	RRP1	77	51.320	Panthera_pardus
ENSLOCG00000004064	-	63	48.872	ENSPTIG00000016894	RRP1B	73	50.000	Panthera_tigris_altaica
ENSLOCG00000004064	-	100	39.336	ENSPANG00000011090	RRP1B	69	48.760	Papio_anubis
ENSLOCG00000004064	-	73	61.266	ENSPKIG00000003422	-	58	62.432	Paramormyrops_kingsleyae
ENSLOCG00000004064	-	66	57.143	ENSPSIG00000008152	RRP1B	59	58.046	Pelodiscus_sinensis
ENSLOCG00000004064	-	50	42.781	ENSPMGG00000007512	-	95	44.072	Periophthalmus_magnuspinnatus
ENSLOCG00000004064	-	100	36.211	ENSPEMG00000022490	Rrp1b	64	52.846	Peromyscus_maniculatus_bairdii
ENSLOCG00000004064	-	64	61.538	ENSPCIG00000015513	RRP1B	61	61.538	Phascolarctos_cinereus
ENSLOCG00000004064	-	60	46.330	ENSPCIG00000015523	-	73	53.614	Phascolarctos_cinereus
ENSLOCG00000004064	-	99	42.131	ENSPFOG00000007424	-	99	41.708	Poecilia_formosa
ENSLOCG00000004064	-	51	55.851	ENSPLAG00000016684	-	51	56.868	Poecilia_latipinna
ENSLOCG00000004064	-	78	56.117	ENSPMEG00000007042	-	68	57.143	Poecilia_mexicana
ENSLOCG00000004064	-	70	55.191	ENSPREG00000015673	-	77	51.181	Poecilia_reticulata
ENSLOCG00000004064	-	58	59.140	ENSPCAG00000013723	RRP1B	56	59.140	Procavia_capensis
ENSLOCG00000004064	-	82	48.691	ENSPCOG00000017927	RRP1B	65	54.032	Propithecus_coquereli
ENSLOCG00000004064	-	70	50.758	ENSPVAG00000001436	RRP1B	63	50.394	Pteropus_vampyrus
ENSLOCG00000004064	-	71	53.421	ENSPNAG00000007718	-	69	58.873	Pygocentrus_nattereri
ENSLOCG00000004064	-	54	46.059	ENSRBIG00000032082	RRP1	74	49.435	Rhinopithecus_bieti
ENSLOCG00000004064	-	54	46.059	ENSRROG00000039799	RRP1	85	45.854	Rhinopithecus_roxellana
ENSLOCG00000004064	-	100	39.075	ENSRROG00000031499	RRP1B	66	48.760	Rhinopithecus_roxellana
ENSLOCG00000004064	-	51	48.936	ENSSBOG00000034689	RRP1	74	51.632	Saimiri_boliviensis_boliviensis
ENSLOCG00000004064	-	70	46.175	ENSSBOG00000034727	RRP1B	62	53.719	Saimiri_boliviensis_boliviensis
ENSLOCG00000004064	-	66	56.250	ENSSFOG00015003932	-	60	56.164	Scleropages_formosus
ENSLOCG00000004064	-	71	61.417	ENSSMAG00000016847	-	85	59.889	Scophthalmus_maximus
ENSLOCG00000004064	-	66	60.533	ENSSDUG00000000551	-	52	60.434	Seriola_dumerili
ENSLOCG00000004064	-	66	61.662	ENSSLDG00000002538	-	55	59.102	Seriola_lalandi_dorsalis
ENSLOCG00000004064	-	57	46.512	ENSSARG00000003108	-	60	46.923	Sorex_araneus
ENSLOCG00000004064	-	71	53.728	ENSSPAG00000005370	-	55	55.039	Stegastes_partitus
ENSLOCG00000004064	-	100	37.908	ENSSSCG00000021698	RRP1B	64	59.302	Sus_scrofa
ENSLOCG00000004064	-	50	46.978	ENSSSCG00000037061	RRP1	76	50.442	Sus_scrofa
ENSLOCG00000004064	-	79	56.627	ENSTNIG00000005053	rrp1	69	60.172	Tetraodon_nigroviridis
ENSLOCG00000004064	-	87	42.117	ENSTBEG00000000422	RRP1B	83	49.074	Tupaia_belangeri
ENSLOCG00000004064	-	76	44.359	ENSTTRG00000000723	RRP1B	66	49.600	Tursiops_truncatus
ENSLOCG00000004064	-	100	37.798	ENSUAMG00000026765	RRP1B	70	51.181	Ursus_americanus
ENSLOCG00000004064	-	64	51.163	ENSUMAG00000025510	RRP1B	84	51.613	Ursus_maritimus
ENSLOCG00000004064	-	59	49.704	ENSXETG00000013683	rrp1b	65	51.703	Xenopus_tropicalis
ENSLOCG00000004064	-	72	56.183	ENSXMAG00000023123	-	99	40.750	Xiphophorus_maculatus