EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000004144 (Gene tree)
Gene ID: 102683738
Gene Symbol: rad54l
Alias: zgc:56289
Full Name: RAD54 like
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 10911 bases
Position: chrLG10:4923162-4934072
Accession: 102683738
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004975	ResIII	PF04851.15	1.1e-08	1	1
ENSLOCP00000004961	ResIII	PF04851.15	1.4e-08	1	1
ENSLOCP00000004975	DEAD	PF00270.29	3e-06	1	1
ENSLOCP00000004961	DEAD	PF00270.29	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004983	-	2516	XM_006634783	ENSLOCP00000004975	672 (aa)	XP_015210870	W5M9B6
ENSLOCT00000004969	-	2277	-	ENSLOCP00000004961	758 (aa)	-	W5M9A2

Gene Model

Click here to download ENSLOCG00000004144's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004144's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000004144	rad54l	88	46.305	ENSLOCG00000010100	rad54b	81	42.775

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004144	rad54l	100	83.086	ENSG00000085999	RAD54L	100	84.000	Homo_sapiens
ENSLOCG00000004144	rad54l	99	84.673	ENSAPOG00000011643	rad54l	99	83.897	Acanthochromis_polyacanthus
ENSLOCG00000004144	rad54l	99	82.169	ENSAMEG00000013902	RAD54L	99	80.537	Ailuropoda_melanoleuca
ENSLOCG00000004144	rad54l	99	85.714	ENSACIG00000001939	rad54l	99	84.005	Amphilophus_citrinellus
ENSLOCG00000004144	rad54l	100	88.707	ENSAOCG00000017576	rad54l	99	87.686	Amphiprion_ocellaris
ENSLOCG00000004144	rad54l	96	89.875	ENSAPEG00000020658	rad54l	98	88.559	Amphiprion_percula
ENSLOCG00000004144	rad54l	94	90.174	ENSATEG00000006767	rad54l	99	88.160	Anabas_testudineus
ENSLOCG00000004144	rad54l	94	85.714	ENSAPLG00000006389	RAD54L	99	83.548	Anas_platyrhynchos
ENSLOCG00000004144	rad54l	100	84.273	ENSACAG00000002312	RAD54L	99	82.369	Anolis_carolinensis
ENSLOCG00000004144	rad54l	100	82.789	ENSANAG00000035439	RAD54L	99	81.099	Aotus_nancymaae
ENSLOCG00000004144	rad54l	100	84.398	ENSACLG00000018711	rad54l	100	83.176	Astatotilapia_calliptera
ENSLOCG00000004144	rad54l	100	88.131	ENSAMXG00000012777	rad54l	99	87.466	Astyanax_mexicanus
ENSLOCG00000004144	rad54l	100	82.519	ENSBTAG00000019901	RAD54L	99	80.857	Bos_taurus
ENSLOCG00000004144	rad54l	99	56.135	WBGene00004298	rad-54	96	54.672	Caenorhabditis_elegans
ENSLOCG00000004144	rad54l	100	82.912	ENSCJAG00000021080	RAD54L	91	81.704	Callithrix_jacchus
ENSLOCG00000004144	rad54l	100	82.344	ENSCAFG00000004272	RAD54L	99	80.831	Canis_familiaris
ENSLOCG00000004144	rad54l	99	82.318	ENSCAFG00020015066	RAD54L	99	80.805	Canis_lupus_dingo
ENSLOCG00000004144	rad54l	99	82.789	ENSCHIG00000020118	RAD54L	99	81.099	Capra_hircus
ENSLOCG00000004144	rad54l	100	82.222	ENSTSYG00000002032	RAD54L	99	80.589	Carlito_syrichta
ENSLOCG00000004144	rad54l	100	83.828	ENSCPOG00000006768	RAD54L	99	81.903	Cavia_porcellus
ENSLOCG00000004144	rad54l	100	83.234	ENSCCAG00000025783	RAD54L	99	81.367	Cebus_capucinus
ENSLOCG00000004144	rad54l	100	83.086	ENSCATG00000030589	RAD54L	99	81.367	Cercocebus_atys
ENSLOCG00000004144	rad54l	100	83.828	ENSCLAG00000004645	RAD54L	99	82.440	Chinchilla_lanigera
ENSLOCG00000004144	rad54l	100	83.086	ENSCSAG00000001229	RAD54L	99	81.233	Chlorocebus_sabaeus
ENSLOCG00000004144	rad54l	100	85.460	ENSCPBG00000005675	RAD54L	99	83.311	Chrysemys_picta_bellii
ENSLOCG00000004144	rad54l	100	64.356	ENSCING00000024456	-	99	63.097	Ciona_intestinalis
ENSLOCG00000004144	rad54l	99	65.306	ENSCSAVG00000010859	-	99	63.529	Ciona_savignyi
ENSLOCG00000004144	rad54l	100	82.938	ENSCANG00000034891	RAD54L	99	81.233	Colobus_angolensis_palliatus
ENSLOCG00000004144	rad54l	100	82.641	ENSCGRG00001014807	Rad54l	99	80.831	Cricetulus_griseus_chok1gshd
ENSLOCG00000004144	rad54l	100	82.641	ENSCGRG00000016038	Rad54l	99	80.831	Cricetulus_griseus_crigri
ENSLOCG00000004144	rad54l	99	85.714	ENSCSEG00000001983	rad54l	99	84.615	Cynoglossus_semilaevis
ENSLOCG00000004144	rad54l	75	90.608	ENSCVAG00000019561	rad54l	99	86.687	Cyprinodon_variegatus
ENSLOCG00000004144	rad54l	100	86.924	ENSDARG00000018623	rad54l	100	86.406	Danio_rerio
ENSLOCG00000004144	rad54l	100	83.086	ENSDNOG00000003395	RAD54L	99	81.233	Dasypus_novemcinctus
ENSLOCG00000004144	rad54l	100	74.671	ENSDORG00000002632	Rad54l	99	73.775	Dipodomys_ordii
ENSLOCG00000004144	rad54l	100	54.070	FBgn0002989	okr	95	53.785	Drosophila_melanogaster
ENSLOCG00000004144	rad54l	76	81.004	ENSETEG00000000550	RAD54L	78	81.004	Echinops_telfairi
ENSLOCG00000004144	rad54l	100	81.065	ENSEASG00005004511	RAD54L	99	80.403	Equus_asinus_asinus
ENSLOCG00000004144	rad54l	100	82.344	ENSECAG00000008760	RAD54L	99	80.831	Equus_caballus
ENSLOCG00000004144	rad54l	100	79.377	ENSEEUG00000008113	RAD54L	99	77.614	Erinaceus_europaeus
ENSLOCG00000004144	rad54l	100	90.533	ENSELUG00000002295	rad54l	100	89.410	Esox_lucius
ENSLOCG00000004144	rad54l	100	82.047	ENSFCAG00000003444	RAD54L	99	80.295	Felis_catus
ENSLOCG00000004144	rad54l	99	83.383	ENSFALG00000009480	RAD54L	99	81.965	Ficedula_albicollis
ENSLOCG00000004144	rad54l	100	82.938	ENSFDAG00000007806	RAD54L	99	81.367	Fukomys_damarensis
ENSLOCG00000004144	rad54l	72	80.412	ENSFHEG00000009824	rad54l	83	80.412	Fundulus_heteroclitus
ENSLOCG00000004144	rad54l	99	86.905	ENSGMOG00000014568	rad54l	100	86.253	Gadus_morhua
ENSLOCG00000004144	rad54l	100	84.524	ENSGALG00000010356	RAD54L	93	82.392	Gallus_gallus
ENSLOCG00000004144	rad54l	100	83.780	ENSGAFG00000011110	rad54l	99	83.780	Gambusia_affinis
ENSLOCG00000004144	rad54l	100	87.982	ENSGACG00000003111	rad54l	99	85.395	Gasterosteus_aculeatus
ENSLOCG00000004144	rad54l	99	84.695	ENSGAGG00000014089	RAD54L	96	82.749	Gopherus_agassizii
ENSLOCG00000004144	rad54l	100	82.789	ENSGGOG00000010602	RAD54L	99	81.099	Gorilla_gorilla
ENSLOCG00000004144	rad54l	100	84.695	ENSHBUG00000007793	rad54l	100	83.445	Haplochromis_burtoni
ENSLOCG00000004144	rad54l	100	83.976	ENSHGLG00000000753	RAD54L	99	82.038	Heterocephalus_glaber_female
ENSLOCG00000004144	rad54l	100	83.828	ENSHGLG00100016987	RAD54L	99	81.903	Heterocephalus_glaber_male
ENSLOCG00000004144	rad54l	100	88.053	ENSIPUG00000015999	rad54l	100	88.809	Ictalurus_punctatus
ENSLOCG00000004144	rad54l	100	82.344	ENSSTOG00000029125	RAD54L	99	80.697	Ictidomys_tridecemlineatus
ENSLOCG00000004144	rad54l	99	69.094	ENSJJAG00000000235	-	99	68.901	Jaculus_jaculus
ENSLOCG00000004144	rad54l	100	86.033	ENSKMAG00000009944	rad54l	99	84.865	Kryptolebias_marmoratus
ENSLOCG00000004144	rad54l	100	87.519	ENSLBEG00000014617	rad54l	97	88.988	Labrus_bergylta
ENSLOCG00000004144	rad54l	99	83.061	ENSLAFG00000007583	RAD54L	99	81.342	Loxodonta_africana
ENSLOCG00000004144	rad54l	100	83.086	ENSMFAG00000031241	RAD54L	99	81.367	Macaca_fascicularis
ENSLOCG00000004144	rad54l	100	83.086	ENSMMUG00000011568	RAD54L	99	81.367	Macaca_mulatta
ENSLOCG00000004144	rad54l	100	82.938	ENSMNEG00000038562	RAD54L	99	81.233	Macaca_nemestrina
ENSLOCG00000004144	rad54l	100	83.086	ENSMLEG00000038145	RAD54L	99	81.367	Mandrillus_leucophaeus
ENSLOCG00000004144	rad54l	100	85.757	ENSMAMG00000022180	rad54l	100	87.629	Mastacembelus_armatus
ENSLOCG00000004144	rad54l	100	84.398	ENSMZEG00005018081	rad54l	100	83.042	Maylandia_zebra
ENSLOCG00000004144	rad54l	99	84.501	ENSMGAG00000010634	RAD54L	99	82.568	Meleagris_gallopavo
ENSLOCG00000004144	rad54l	100	83.234	ENSMAUG00000020076	Rad54l	99	81.367	Mesocricetus_auratus
ENSLOCG00000004144	rad54l	100	83.680	ENSMICG00000003266	RAD54L	99	81.903	Microcebus_murinus
ENSLOCG00000004144	rad54l	100	83.234	ENSMOCG00000001778	Rad54l	99	81.501	Microtus_ochrogaster
ENSLOCG00000004144	rad54l	99	82.526	ENSMALG00000021148	rad54l	99	81.758	Monopterus_albus
ENSLOCG00000004144	rad54l	100	78.582	MGP_CAROLIEiJ_G0026325	Rad54l	99	77.457	Mus_caroli
ENSLOCG00000004144	rad54l	100	82.789	ENSMUSG00000028702	Rad54l	99	81.099	Mus_musculus
ENSLOCG00000004144	rad54l	100	82.467	MGP_PahariEiJ_G0028657	Rad54l	99	80.805	Mus_pahari
ENSLOCG00000004144	rad54l	100	82.938	MGP_SPRETEiJ_G0027297	Rad54l	99	81.233	Mus_spretus
ENSLOCG00000004144	rad54l	99	82.344	ENSMPUG00000012883	RAD54L	99	80.697	Mustela_putorius_furo
ENSLOCG00000004144	rad54l	99	83.061	ENSMLUG00000003763	RAD54L	99	81.477	Myotis_lucifugus
ENSLOCG00000004144	rad54l	100	82.318	ENSNGAG00000024213	Rad54l	99	80.403	Nannospalax_galili
ENSLOCG00000004144	rad54l	100	82.493	ENSNLEG00000016548	RAD54L	99	80.965	Nomascus_leucogenys
ENSLOCG00000004144	rad54l	90	80.298	ENSMEUG00000006793	RAD54L	100	78.783	Notamacropus_eugenii
ENSLOCG00000004144	rad54l	90	87.442	ENSOPRG00000016016	RAD54L	90	81.185	Ochotona_princeps
ENSLOCG00000004144	rad54l	100	83.976	ENSODEG00000008519	RAD54L	99	82.038	Octodon_degus
ENSLOCG00000004144	rad54l	100	84.250	ENSONIG00000007659	rad54l	100	83.042	Oreochromis_niloticus
ENSLOCG00000004144	rad54l	100	82.641	ENSOCUG00000005229	RAD54L	99	80.965	Oryctolagus_cuniculus
ENSLOCG00000004144	rad54l	100	83.358	ENSORLG00000002958	rad54l	99	83.266	Oryzias_latipes
ENSLOCG00000004144	rad54l	100	83.952	ENSORLG00020006554	rad54l	99	86.765	Oryzias_latipes_hni
ENSLOCG00000004144	rad54l	100	83.210	ENSORLG00015002907	rad54l	99	83.536	Oryzias_latipes_hsok
ENSLOCG00000004144	rad54l	100	84.226	ENSOMEG00000007770	rad54l	99	83.649	Oryzias_melastigma
ENSLOCG00000004144	rad54l	100	82.988	ENSOARG00000002264	RAD54L	99	81.283	Ovis_aries
ENSLOCG00000004144	rad54l	100	82.938	ENSPPAG00000031222	RAD54L	99	81.099	Pan_paniscus
ENSLOCG00000004144	rad54l	100	82.047	ENSPPRG00000010317	RAD54L	99	80.295	Panthera_pardus
ENSLOCG00000004144	rad54l	100	82.047	ENSPTIG00000012200	RAD54L	99	80.295	Panthera_tigris_altaica
ENSLOCG00000004144	rad54l	100	82.789	ENSPTRG00000000689	RAD54L	99	81.099	Pan_troglodytes
ENSLOCG00000004144	rad54l	100	83.086	ENSPANG00000016295	RAD54L	99	81.367	Papio_anubis
ENSLOCG00000004144	rad54l	100	81.399	ENSPKIG00000016172	rad54l	99	80.650	Paramormyrops_kingsleyae
ENSLOCG00000004144	rad54l	99	85.113	ENSPSIG00000003258	RAD54L	99	82.970	Pelodiscus_sinensis
ENSLOCG00000004144	rad54l	100	81.602	ENSPMGG00000016335	rad54l	99	80.162	Periophthalmus_magnuspinnatus
ENSLOCG00000004144	rad54l	100	82.938	ENSPEMG00000011422	Rad54l	99	81.233	Peromyscus_maniculatus_bairdii
ENSLOCG00000004144	rad54l	92	76.396	ENSPMAG00000007719	rad54l	99	70.580	Petromyzon_marinus
ENSLOCG00000004144	rad54l	100	82.641	ENSPCIG00000029032	RAD54L	100	81.183	Phascolarctos_cinereus
ENSLOCG00000004144	rad54l	94	86.846	ENSPFOG00000013732	rad54l	99	86.846	Poecilia_formosa
ENSLOCG00000004144	rad54l	90	84.992	ENSPLAG00000023416	rad54l	99	84.992	Poecilia_latipinna
ENSLOCG00000004144	rad54l	100	84.524	ENSPMEG00000008299	rad54l	99	84.524	Poecilia_mexicana
ENSLOCG00000004144	rad54l	100	83.333	ENSPREG00000019955	rad54l	100	82.075	Poecilia_reticulata
ENSLOCG00000004144	rad54l	93	81.095	ENSPPYG00000001398	RAD54L	89	81.095	Pongo_abelii
ENSLOCG00000004144	rad54l	78	89.051	ENSPCAG00000005323	RAD54L	71	89.051	Procavia_capensis
ENSLOCG00000004144	rad54l	100	83.234	ENSPCOG00000015423	RAD54L	99	81.501	Propithecus_coquereli
ENSLOCG00000004144	rad54l	99	80.617	ENSPNYG00000002942	rad54l	99	79.814	Pundamilia_nyererei
ENSLOCG00000004144	rad54l	100	88.262	ENSPNAG00000012483	rad54l	100	87.214	Pygocentrus_nattereri
ENSLOCG00000004144	rad54l	100	82.789	ENSRNOG00000013148	Rad54l	99	81.099	Rattus_norvegicus
ENSLOCG00000004144	rad54l	100	83.086	ENSRBIG00000043495	RAD54L	99	81.367	Rhinopithecus_bieti
ENSLOCG00000004144	rad54l	100	83.086	ENSRROG00000020844	RAD54L	99	81.367	Rhinopithecus_roxellana
ENSLOCG00000004144	rad54l	79	51.483	YGL163C	RAD54	71	48.382	Saccharomyces_cerevisiae
ENSLOCG00000004144	rad54l	100	83.234	ENSSBOG00000024672	RAD54L	99	81.367	Saimiri_boliviensis_boliviensis
ENSLOCG00000004144	rad54l	100	83.309	ENSSHAG00000000110	RAD54L	100	82.329	Sarcophilus_harrisii
ENSLOCG00000004144	rad54l	100	87.964	ENSSDUG00000019147	rad54l	100	86.406	Seriola_dumerili
ENSLOCG00000004144	rad54l	100	87.816	ENSSLDG00000012330	rad54l	100	86.272	Seriola_lalandi_dorsalis
ENSLOCG00000004144	rad54l	92	79.454	ENSSARG00000006689	RAD54L	100	79.454	Sorex_araneus
ENSLOCG00000004144	rad54l	100	87.073	ENSSPAG00000011016	rad54l	99	86.081	Stegastes_partitus
ENSLOCG00000004144	rad54l	100	83.086	ENSSSCG00000003905	RAD54L	99	81.233	Sus_scrofa
ENSLOCG00000004144	rad54l	99	83.531	ENSTGUG00000008233	RAD54L	99	82.234	Taeniopygia_guttata
ENSLOCG00000004144	rad54l	99	82.318	ENSTRUG00000008410	rad54l	99	81.023	Takifugu_rubripes
ENSLOCG00000004144	rad54l	99	79.613	ENSTNIG00000004716	rad54l	99	79.217	Tetraodon_nigroviridis
ENSLOCG00000004144	rad54l	100	76.113	ENSTTRG00000006315	RAD54L	99	74.665	Tursiops_truncatus
ENSLOCG00000004144	rad54l	99	81.913	ENSUAMG00000011824	RAD54L	99	80.432	Ursus_americanus
ENSLOCG00000004144	rad54l	99	80.717	ENSUMAG00000023603	RAD54L	99	79.352	Ursus_maritimus
ENSLOCG00000004144	rad54l	100	82.344	ENSVVUG00000007201	RAD54L	99	80.965	Vulpes_vulpes
ENSLOCG00000004144	rad54l	96	77.280	ENSXETG00000004369	rad54l	100	76.151	Xenopus_tropicalis
ENSLOCG00000004144	rad54l	61	81.220	ENSXCOG00000016028	rad54l	82	83.905	Xiphophorus_couchianus