EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000004187 (Gene tree)
Gene ID: 102695021
Gene Symbol: snrnp48
Alias: fd10a06|wu:fd10a06
Full Name: small nuclear ribonucleoprotein U11/U12 subunit 48
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 9908 bases
Position: chrLG11:10421620-10431527
Accession: 102695021
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004995	zf-U11-48K	PF05253.12	1.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005003	-	2048	XM_006635676	ENSLOCP00000004995	338 (aa)	XP_015212624	W5M9D6

Gene Model

Click here to download ENSLOCG00000004187's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004187's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004187	snrnp48	95	48.071	ENSG00000168566	SNRNP48	83	50.519	Homo_sapiens
ENSLOCG00000004187	snrnp48	94	56.250	ENSAPOG00000021430	snrnp48	83	60.284	Acanthochromis_polyacanthus
ENSLOCG00000004187	snrnp48	95	47.214	ENSAMEG00000017349	SNRNP48	84	49.147	Ailuropoda_melanoleuca
ENSLOCG00000004187	snrnp48	82	55.830	ENSACIG00000002032	snrnp48	81	56.028	Amphilophus_citrinellus
ENSLOCG00000004187	snrnp48	94	55.901	ENSAOCG00000010562	snrnp48	83	59.929	Amphiprion_ocellaris
ENSLOCG00000004187	snrnp48	94	56.347	ENSAPEG00000003231	snrnp48	82	60.000	Amphiprion_percula
ENSLOCG00000004187	snrnp48	93	56.740	ENSATEG00000020210	snrnp48	84	60.702	Anabas_testudineus
ENSLOCG00000004187	snrnp48	82	56.701	ENSACAG00000002811	SNRNP48	77	58.871	Anolis_carolinensis
ENSLOCG00000004187	snrnp48	95	48.368	ENSANAG00000033538	SNRNP48	83	50.865	Aotus_nancymaae
ENSLOCG00000004187	snrnp48	94	60.436	ENSAMXG00000015309	snrnp48	85	62.456	Astyanax_mexicanus
ENSLOCG00000004187	snrnp48	92	50.765	ENSBTAG00000001123	SNRNP48	84	52.069	Bos_taurus
ENSLOCG00000004187	snrnp48	95	48.225	ENSCJAG00000021330	SNRNP48	83	50.865	Callithrix_jacchus
ENSLOCG00000004187	snrnp48	95	48.105	ENSCAFG00000009574	SNRNP48	69	50.694	Canis_familiaris
ENSLOCG00000004187	snrnp48	95	48.961	ENSCAFG00020013203	SNRNP48	83	50.519	Canis_lupus_dingo
ENSLOCG00000004187	snrnp48	92	50.459	ENSCHIG00000015216	SNRNP48	84	52.069	Capra_hircus
ENSLOCG00000004187	snrnp48	98	49.133	ENSTSYG00000000698	SNRNP48	84	51.678	Carlito_syrichta
ENSLOCG00000004187	snrnp48	87	49.839	ENSCAPG00000006768	SNRNP48	84	52.091	Cavia_aperea
ENSLOCG00000004187	snrnp48	95	48.961	ENSCPOG00000007910	SNRNP48	83	51.557	Cavia_porcellus
ENSLOCG00000004187	snrnp48	93	48.649	ENSCCAG00000035652	SNRNP48	82	51.228	Cebus_capucinus
ENSLOCG00000004187	snrnp48	95	48.665	ENSCATG00000033947	SNRNP48	83	50.865	Cercocebus_atys
ENSLOCG00000004187	snrnp48	95	49.852	ENSCLAG00000003765	SNRNP48	83	52.941	Chinchilla_lanigera
ENSLOCG00000004187	snrnp48	95	48.665	ENSCSAG00000007409	SNRNP48	83	51.211	Chlorocebus_sabaeus
ENSLOCG00000004187	snrnp48	83	54.455	ENSCPBG00000019146	SNRNP48	79	57.364	Chrysemys_picta_bellii
ENSLOCG00000004187	snrnp48	95	48.665	ENSCANG00000030017	SNRNP48	83	51.211	Colobus_angolensis_palliatus
ENSLOCG00000004187	snrnp48	95	49.258	ENSCGRG00001001076	-	84	51.903	Cricetulus_griseus_chok1gshd
ENSLOCG00000004187	snrnp48	89	45.277	ENSCGRG00001008805	-	80	45.756	Cricetulus_griseus_chok1gshd
ENSLOCG00000004187	snrnp48	95	49.258	ENSCGRG00000007781	Snrnp48	84	51.903	Cricetulus_griseus_crigri
ENSLOCG00000004187	snrnp48	77	56.757	ENSCSEG00000000722	snrnp48	78	56.115	Cynoglossus_semilaevis
ENSLOCG00000004187	snrnp48	91	58.521	ENSCVAG00000019829	snrnp48	72	61.348	Cyprinodon_variegatus
ENSLOCG00000004187	snrnp48	93	56.481	ENSDARG00000039989	snrnp48	83	60.000	Danio_rerio
ENSLOCG00000004187	snrnp48	95	48.225	ENSDNOG00000014978	SNRNP48	93	43.511	Dasypus_novemcinctus
ENSLOCG00000004187	snrnp48	95	47.041	ENSDORG00000015140	Snrnp48	84	48.621	Dipodomys_ordii
ENSLOCG00000004187	snrnp48	99	47.278	ENSEASG00005012021	SNRNP48	86	48.505	Equus_asinus_asinus
ENSLOCG00000004187	snrnp48	99	47.278	ENSECAG00000026937	SNRNP48	86	48.837	Equus_caballus
ENSLOCG00000004187	snrnp48	95	34.218	ENSEEUG00000015437	SNRNP48	83	34.483	Erinaceus_europaeus
ENSLOCG00000004187	snrnp48	91	58.900	ENSELUG00000009766	snrnp48	93	56.119	Esox_lucius
ENSLOCG00000004187	snrnp48	95	48.673	ENSFCAG00000018853	SNRNP48	83	51.211	Felis_catus
ENSLOCG00000004187	snrnp48	84	54.817	ENSFALG00000007797	SNRNP48	81	57.087	Ficedula_albicollis
ENSLOCG00000004187	snrnp48	95	48.665	ENSFDAG00000009231	SNRNP48	83	51.389	Fukomys_damarensis
ENSLOCG00000004187	snrnp48	60	65.686	ENSFHEG00000014647	snrnp48	83	61.667	Fundulus_heteroclitus
ENSLOCG00000004187	snrnp48	73	61.943	ENSGMOG00000018599	-	78	61.508	Gadus_morhua
ENSLOCG00000004187	snrnp48	77	58.209	ENSGALG00000013005	SNRNP48	82	59.109	Gallus_gallus
ENSLOCG00000004187	snrnp48	76	61.479	ENSGAFG00000021639	snrnp48	85	58.763	Gambusia_affinis
ENSLOCG00000004187	snrnp48	74	60.643	ENSGACG00000017756	-	88	56.711	Gasterosteus_aculeatus
ENSLOCG00000004187	snrnp48	83	55.482	ENSGAGG00000000865	SNRNP48	82	58.594	Gopherus_agassizii
ENSLOCG00000004187	snrnp48	95	48.368	ENSGGOG00000013220	SNRNP48	83	50.865	Gorilla_gorilla
ENSLOCG00000004187	snrnp48	79	59.851	ENSHBUG00000017066	snrnp48	81	60.000	Haplochromis_burtoni
ENSLOCG00000004187	snrnp48	95	48.665	ENSHGLG00000015241	SNRNP48	83	51.211	Heterocephalus_glaber_female
ENSLOCG00000004187	snrnp48	95	48.665	ENSHGLG00100010027	SNRNP48	83	51.211	Heterocephalus_glaber_male
ENSLOCG00000004187	snrnp48	73	59.109	ENSHCOG00000014066	snrnp48	83	56.098	Hippocampus_comes
ENSLOCG00000004187	snrnp48	95	48.665	ENSSTOG00000014635	SNRNP48	83	50.865	Ictidomys_tridecemlineatus
ENSLOCG00000004187	snrnp48	84	50.847	ENSJJAG00000011495	Snrnp48	83	51.020	Jaculus_jaculus
ENSLOCG00000004187	snrnp48	94	55.556	ENSKMAG00000016514	snrnp48	83	60.351	Kryptolebias_marmoratus
ENSLOCG00000004187	snrnp48	79	60.517	ENSLBEG00000026249	snrnp48	83	60.777	Labrus_bergylta
ENSLOCG00000004187	snrnp48	96	53.488	ENSLACG00000003958	SNRNP48	87	56.000	Latimeria_chalumnae
ENSLOCG00000004187	snrnp48	95	47.774	ENSLAFG00000011152	SNRNP48	83	50.865	Loxodonta_africana
ENSLOCG00000004187	snrnp48	95	48.665	ENSMFAG00000045216	SNRNP48	83	51.211	Macaca_fascicularis
ENSLOCG00000004187	snrnp48	95	48.665	ENSMMUG00000014785	SNRNP48	83	51.211	Macaca_mulatta
ENSLOCG00000004187	snrnp48	95	48.368	ENSMNEG00000042269	SNRNP48	83	50.865	Macaca_nemestrina
ENSLOCG00000004187	snrnp48	95	48.665	ENSMLEG00000034004	SNRNP48	83	51.211	Mandrillus_leucophaeus
ENSLOCG00000004187	snrnp48	94	53.774	ENSMAMG00000018673	snrnp48	74	58.741	Mastacembelus_armatus
ENSLOCG00000004187	snrnp48	81	55.705	ENSMGAG00000006037	SNRNP48	83	58.800	Meleagris_gallopavo
ENSLOCG00000004187	snrnp48	99	47.851	ENSMAUG00000011944	Snrnp48	86	50.166	Mesocricetus_auratus
ENSLOCG00000004187	snrnp48	84	51.034	ENSMICG00000012497	SNRNP48	83	50.694	Microcebus_murinus
ENSLOCG00000004187	snrnp48	99	48.997	ENSMOCG00000015555	Snrnp48	84	53.287	Microtus_ochrogaster
ENSLOCG00000004187	snrnp48	59	60.804	ENSMMOG00000003072	-	63	60.804	Mola_mola
ENSLOCG00000004187	snrnp48	87	54.221	ENSMODG00000009996	SNRNP48	81	54.221	Monodelphis_domestica
ENSLOCG00000004187	snrnp48	80	58.456	ENSMALG00000005725	snrnp48	83	58.803	Monopterus_albus
ENSLOCG00000004187	snrnp48	95	49.258	MGP_CAROLIEiJ_G0018441	Snrnp48	84	51.557	Mus_caroli
ENSLOCG00000004187	snrnp48	95	48.961	ENSMUSG00000021431	Snrnp48	84	51.211	Mus_musculus
ENSLOCG00000004187	snrnp48	95	49.852	MGP_PahariEiJ_G0019509	Snrnp48	84	52.249	Mus_pahari
ENSLOCG00000004187	snrnp48	95	49.258	MGP_SPRETEiJ_G0019321	Snrnp48	84	51.557	Mus_spretus
ENSLOCG00000004187	snrnp48	95	48.961	ENSNGAG00000004849	Snrnp48	83	51.211	Nannospalax_galili
ENSLOCG00000004187	snrnp48	79	59.480	ENSNBRG00000012127	snrnp48	81	59.643	Neolamprologus_brichardi
ENSLOCG00000004187	snrnp48	95	48.368	ENSNLEG00000011667	SNRNP48	83	50.865	Nomascus_leucogenys
ENSLOCG00000004187	snrnp48	91	47.812	ENSOPRG00000015471	SNRNP48	88	50.000	Ochotona_princeps
ENSLOCG00000004187	snrnp48	92	55.128	ENSONIG00000001520	snrnp48	81	60.714	Oreochromis_niloticus
ENSLOCG00000004187	snrnp48	58	44.907	ENSOANG00000019888	-	100	45.370	Ornithorhynchus_anatinus
ENSLOCG00000004187	snrnp48	81	50.896	ENSOCUG00000005168	SNRNP48	93	51.557	Oryctolagus_cuniculus
ENSLOCG00000004187	snrnp48	87	61.486	ENSORLG00000015654	snrnp48	80	63.309	Oryzias_latipes
ENSLOCG00000004187	snrnp48	87	61.149	ENSORLG00020015976	snrnp48	68	63.309	Oryzias_latipes_hni
ENSLOCG00000004187	snrnp48	87	61.149	ENSORLG00015022379	snrnp48	69	63.309	Oryzias_latipes_hsok
ENSLOCG00000004187	snrnp48	82	62.816	ENSOMEG00000022007	snrnp48	83	61.620	Oryzias_melastigma
ENSLOCG00000004187	snrnp48	90	46.729	ENSOGAG00000005275	SNRNP48	87	48.805	Otolemur_garnettii
ENSLOCG00000004187	snrnp48	82	51.034	ENSOARG00000017319	SNRNP48	83	53.279	Ovis_aries
ENSLOCG00000004187	snrnp48	95	48.368	ENSPPAG00000032873	SNRNP48	83	50.865	Pan_paniscus
ENSLOCG00000004187	snrnp48	92	49.390	ENSPPRG00000004283	SNRNP48	83	50.865	Panthera_pardus
ENSLOCG00000004187	snrnp48	82	49.310	ENSPTIG00000013502	SNRNP48	82	52.066	Panthera_tigris_altaica
ENSLOCG00000004187	snrnp48	95	48.368	ENSPTRG00000017703	SNRNP48	83	50.865	Pan_troglodytes
ENSLOCG00000004187	snrnp48	95	48.665	ENSPANG00000000771	SNRNP48	83	51.211	Papio_anubis
ENSLOCG00000004187	snrnp48	96	57.485	ENSPKIG00000013703	snrnp48	62	61.224	Paramormyrops_kingsleyae
ENSLOCG00000004187	snrnp48	84	53.481	ENSPSIG00000002213	SNRNP48	83	56.180	Pelodiscus_sinensis
ENSLOCG00000004187	snrnp48	74	54.651	ENSPMGG00000008120	snrnp48	90	54.651	Periophthalmus_magnuspinnatus
ENSLOCG00000004187	snrnp48	95	49.555	ENSPEMG00000008872	Snrnp48	84	52.249	Peromyscus_maniculatus_bairdii
ENSLOCG00000004187	snrnp48	81	60.219	ENSPFOG00000003578	snrnp48	85	59.450	Poecilia_formosa
ENSLOCG00000004187	snrnp48	74	58.238	ENSPLAG00000002290	snrnp48	90	58.238	Poecilia_latipinna
ENSLOCG00000004187	snrnp48	81	60.219	ENSPMEG00000018033	snrnp48	85	59.450	Poecilia_mexicana
ENSLOCG00000004187	snrnp48	75	62.302	ENSPREG00000018541	snrnp48	85	59.450	Poecilia_reticulata
ENSLOCG00000004187	snrnp48	95	47.478	ENSPPYG00000016209	SNRNP48	83	49.827	Pongo_abelii
ENSLOCG00000004187	snrnp48	71	43.265	ENSPCAG00000011991	SNRNP48	93	43.874	Procavia_capensis
ENSLOCG00000004187	snrnp48	95	48.071	ENSPVAG00000002854	SNRNP48	92	47.950	Pteropus_vampyrus
ENSLOCG00000004187	snrnp48	91	49.682	ENSPNYG00000015399	snrnp48	89	60.000	Pundamilia_nyererei
ENSLOCG00000004187	snrnp48	95	50.445	ENSRNOG00000013756	Snrnp48	84	52.595	Rattus_norvegicus
ENSLOCG00000004187	snrnp48	84	51.379	ENSRBIG00000043856	SNRNP48	90	51.211	Rhinopithecus_bieti
ENSLOCG00000004187	snrnp48	95	48.368	ENSRROG00000043229	SNRNP48	83	50.865	Rhinopithecus_roxellana
ENSLOCG00000004187	snrnp48	95	48.665	ENSSBOG00000019486	SNRNP48	83	51.211	Saimiri_boliviensis_boliviensis
ENSLOCG00000004187	snrnp48	82	53.767	ENSSHAG00000014483	SNRNP48	83	53.767	Sarcophilus_harrisii
ENSLOCG00000004187	snrnp48	75	65.625	ENSSFOG00015006610	snrnp48	71	61.794	Scleropages_formosus
ENSLOCG00000004187	snrnp48	94	58.491	ENSSDUG00000014953	snrnp48	82	62.143	Seriola_dumerili
ENSLOCG00000004187	snrnp48	94	56.918	ENSSLDG00000005989	snrnp48	82	60.357	Seriola_lalandi_dorsalis
ENSLOCG00000004187	snrnp48	84	50.662	ENSSPUG00000006257	SNRNP48	72	54.688	Sphenodon_punctatus
ENSLOCG00000004187	snrnp48	94	56.563	ENSSPAG00000006454	snrnp48	82	60.357	Stegastes_partitus
ENSLOCG00000004187	snrnp48	82	53.559	ENSTGUG00000007575	SNRNP48	92	53.242	Taeniopygia_guttata
ENSLOCG00000004187	snrnp48	73	58.871	ENSTRUG00000007031	snrnp48	82	56.690	Takifugu_rubripes
ENSLOCG00000004187	snrnp48	96	51.534	ENSTNIG00000012977	-	86	53.846	Tetraodon_nigroviridis
ENSLOCG00000004187	snrnp48	74	51.953	ENSTBEG00000015620	SNRNP48	75	51.953	Tupaia_belangeri
ENSLOCG00000004187	snrnp48	92	49.080	ENSTTRG00000016715	SNRNP48	83	50.865	Tursiops_truncatus
ENSLOCG00000004187	snrnp48	95	48.214	ENSUAMG00000003690	SNRNP48	83	50.347	Ursus_americanus
ENSLOCG00000004187	snrnp48	82	48.958	ENSVPAG00000003557	SNRNP48	82	52.479	Vicugna_pacos
ENSLOCG00000004187	snrnp48	95	49.107	ENSVVUG00000004996	SNRNP48	83	50.694	Vulpes_vulpes
ENSLOCG00000004187	snrnp48	88	49.664	ENSXETG00000020447	snrnp48	82	50.360	Xenopus_tropicalis
ENSLOCG00000004187	snrnp48	70	61.441	ENSXCOG00000004478	snrnp48	72	61.441	Xiphophorus_couchianus
ENSLOCG00000004187	snrnp48	81	60.219	ENSXMAG00000013595	snrnp48	85	59.450	Xiphophorus_maculatus