EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000004240 (Gene tree)
Gene ID: 102692024
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 20074 bases
Position: chrLG11:10477520-10497593
Accession: 102692024
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005088	tRNA-synt_1g	PF09334.11	1.3e-12	1	1
ENSLOCP00000005088	Anticodon_1	PF08264.13	7.9e-35	1	1
ENSLOCP00000005088	tRNA-synt_1	PF00133.22	2e-208	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005096	-	4415	XM_006635662	ENSLOCP00000005088	1257 (aa)	XP_015212607	W5M9M9

Gene Model

Click here to download ENSLOCG00000004240's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004240's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004240	vars	100	66.562	ENSG00000204394	VARS	99	73.006	Homo_sapiens
ENSLOCG00000004240	vars	98	73.435	ENSAPOG00000020921	vars	96	76.083	Acanthochromis_polyacanthus
ENSLOCG00000004240	vars	98	73.435	ENSAPOG00000020691	vars	96	76.083	Acanthochromis_polyacanthus
ENSLOCG00000004240	vars	100	66.432	ENSAMEG00000006417	VARS	100	66.511	Ailuropoda_melanoleuca
ENSLOCG00000004240	vars	100	75.059	ENSACIG00000013752	vars	100	74.824	Amphilophus_citrinellus
ENSLOCG00000004240	vars	100	74.627	ENSAOCG00000002447	vars	99	74.863	Amphiprion_ocellaris
ENSLOCG00000004240	vars	100	74.784	ENSAPEG00000010638	vars	99	75.020	Amphiprion_percula
ENSLOCG00000004240	vars	100	72.756	ENSATEG00000020219	vars	100	72.598	Anabas_testudineus
ENSLOCG00000004240	vars	90	74.148	ENSACAG00000029133	-	99	74.410	Anolis_carolinensis
ENSLOCG00000004240	vars	100	66.719	ENSANAG00000015453	VARS	100	66.719	Aotus_nancymaae
ENSLOCG00000004240	vars	100	75.587	ENSACLG00000025699	vars	97	75.352	Astatotilapia_calliptera
ENSLOCG00000004240	vars	94	73.975	ENSAMXG00000017716	vars	95	73.975	Astyanax_mexicanus
ENSLOCG00000004240	vars	100	66.328	ENSBTAG00000005631	VARS	100	66.562	Bos_taurus
ENSLOCG00000004240	vars	100	66.250	ENSCJAG00000002604	VARS	100	66.250	Callithrix_jacchus
ENSLOCG00000004240	vars	100	66.406	ENSCAFG00000000636	VARS	100	66.484	Canis_familiaris
ENSLOCG00000004240	vars	94	67.669	ENSCAFG00020020790	VARS	96	67.586	Canis_lupus_dingo
ENSLOCG00000004240	vars	100	66.849	ENSCHIG00000011008	VARS	100	67.084	Capra_hircus
ENSLOCG00000004240	vars	100	66.406	ENSTSYG00000001567	VARS	100	66.641	Carlito_syrichta
ENSLOCG00000004240	vars	91	69.679	ENSCAPG00000013736	VARS	98	69.391	Cavia_aperea
ENSLOCG00000004240	vars	100	65.938	ENSCPOG00000000870	VARS	100	65.676	Cavia_porcellus
ENSLOCG00000004240	vars	100	66.849	ENSCCAG00000035656	VARS	100	66.849	Cebus_capucinus
ENSLOCG00000004240	vars	100	67.109	ENSCATG00000022394	VARS	100	67.109	Cercocebus_atys
ENSLOCG00000004240	vars	90	67.635	ENSCLAG00000009470	VARS	93	67.350	Chinchilla_lanigera
ENSLOCG00000004240	vars	100	67.266	ENSCSAG00000008784	VARS	100	67.031	Chlorocebus_sabaeus
ENSLOCG00000004240	vars	77	77.390	ENSCPBG00000007943	VARS	96	77.287	Chrysemys_picta_bellii
ENSLOCG00000004240	vars	100	67.188	ENSCANG00000033570	VARS	100	67.188	Colobus_angolensis_palliatus
ENSLOCG00000004240	vars	100	66.745	ENSCGRG00001005686	Vars	100	66.901	Cricetulus_griseus_chok1gshd
ENSLOCG00000004240	vars	93	65.232	ENSCGRG00000013352	Vars	78	65.397	Cricetulus_griseus_crigri
ENSLOCG00000004240	vars	100	72.161	ENSCSEG00000019652	vars	100	72.082	Cynoglossus_semilaevis
ENSLOCG00000004240	vars	100	74.628	ENSCVAG00000022398	vars	100	74.863	Cyprinodon_variegatus
ENSLOCG00000004240	vars	100	75.412	ENSDARG00000044575	vars	100	74.941	Danio_rerio
ENSLOCG00000004240	vars	83	72.797	ENSDORG00000016433	Vars	93	72.797	Dipodomys_ordii
ENSLOCG00000004240	vars	69	75.949	ENSETEG00000003824	VARS	77	75.949	Echinops_telfairi
ENSLOCG00000004240	vars	58	66.118	ENSEBUG00000004637	vars	100	66.392	Eptatretus_burgeri
ENSLOCG00000004240	vars	100	66.562	ENSEASG00005015673	VARS	100	66.562	Equus_asinus_asinus
ENSLOCG00000004240	vars	100	66.979	ENSECAG00000014620	VARS	100	66.979	Equus_caballus
ENSLOCG00000004240	vars	72	71.178	ENSEEUG00000004116	VARS	73	71.178	Erinaceus_europaeus
ENSLOCG00000004240	vars	100	74.297	ENSELUG00000006550	vars	97	74.941	Esox_lucius
ENSLOCG00000004240	vars	100	66.406	ENSFCAG00000004510	VARS	100	66.484	Felis_catus
ENSLOCG00000004240	vars	84	71.443	ENSFDAG00000011401	VARS	100	71.116	Fukomys_damarensis
ENSLOCG00000004240	vars	100	74.236	ENSFHEG00000010672	vars	100	74.471	Fundulus_heteroclitus
ENSLOCG00000004240	vars	100	73.140	ENSGMOG00000014908	vars	100	72.905	Gadus_morhua
ENSLOCG00000004240	vars	100	74.588	ENSGAFG00000021630	vars	100	74.824	Gambusia_affinis
ENSLOCG00000004240	vars	100	73.286	ENSGACG00000009601	vars	100	72.971	Gasterosteus_aculeatus
ENSLOCG00000004240	vars	100	67.031	ENSGGOG00000011364	VARS	100	67.031	Gorilla_gorilla
ENSLOCG00000004240	vars	100	75.509	ENSHBUG00000017151	vars	97	75.274	Haplochromis_burtoni
ENSLOCG00000004240	vars	100	66.145	ENSHGLG00000011646	VARS	100	66.145	Heterocephalus_glaber_female
ENSLOCG00000004240	vars	94	62.902	ENSHGLG00100018062	VARS	99	62.902	Heterocephalus_glaber_male
ENSLOCG00000004240	vars	99	74.275	ENSHCOG00000012198	vars	99	73.920	Hippocampus_comes
ENSLOCG00000004240	vars	100	75.373	ENSIPUG00000005218	vars	100	75.059	Ictalurus_punctatus
ENSLOCG00000004240	vars	100	66.328	ENSSTOG00000013112	VARS	100	66.328	Ictidomys_tridecemlineatus
ENSLOCG00000004240	vars	100	54.193	ENSJJAG00000015343	-	100	53.883	Jaculus_jaculus
ENSLOCG00000004240	vars	100	65.962	ENSJJAG00000019749	-	100	65.752	Jaculus_jaculus
ENSLOCG00000004240	vars	100	73.697	ENSKMAG00000009455	vars	100	73.539	Kryptolebias_marmoratus
ENSLOCG00000004240	vars	100	73.481	ENSLBEG00000010341	vars	100	73.402	Labrus_bergylta
ENSLOCG00000004240	vars	94	70.380	ENSLACG00000015232	VARS	99	70.792	Latimeria_chalumnae
ENSLOCG00000004240	vars	100	66.380	ENSLAFG00000023090	VARS	100	66.302	Loxodonta_africana
ENSLOCG00000004240	vars	100	67.109	ENSMFAG00000001032	VARS	100	66.875	Macaca_fascicularis
ENSLOCG00000004240	vars	100	67.109	ENSMMUG00000006828	VARS	100	66.875	Macaca_mulatta
ENSLOCG00000004240	vars	100	67.031	ENSMNEG00000042072	VARS	100	66.797	Macaca_nemestrina
ENSLOCG00000004240	vars	100	67.109	ENSMLEG00000039307	VARS	100	67.109	Mandrillus_leucophaeus
ENSLOCG00000004240	vars	100	75.157	ENSMAMG00000003949	vars	100	74.764	Mastacembelus_armatus
ENSLOCG00000004240	vars	100	75.509	ENSMZEG00005018327	vars	97	75.274	Maylandia_zebra
ENSLOCG00000004240	vars	100	66.588	ENSMAUG00000006715	Vars	100	66.745	Mesocricetus_auratus
ENSLOCG00000004240	vars	100	66.511	ENSMICG00000003548	VARS	100	66.094	Microcebus_murinus
ENSLOCG00000004240	vars	100	64.996	ENSMOCG00000015404	Vars	100	65.153	Microtus_ochrogaster
ENSLOCG00000004240	vars	100	72.856	ENSMMOG00000015801	vars	100	72.699	Mola_mola
ENSLOCG00000004240	vars	100	66.484	ENSMODG00000015204	-	100	66.197	Monodelphis_domestica
ENSLOCG00000004240	vars	99	74.236	ENSMALG00000022532	vars	99	73.923	Monopterus_albus
ENSLOCG00000004240	vars	100	66.875	MGP_CAROLIEiJ_G0021491	Vars	100	66.797	Mus_caroli
ENSLOCG00000004240	vars	100	66.875	ENSMUSG00000007029	Vars	100	66.797	Mus_musculus
ENSLOCG00000004240	vars	100	66.797	MGP_PahariEiJ_G0020486	Vars	100	66.719	Mus_pahari
ENSLOCG00000004240	vars	100	66.954	MGP_SPRETEiJ_G0022396	Vars	100	66.875	Mus_spretus
ENSLOCG00000004240	vars	100	66.432	ENSMPUG00000010821	VARS	100	66.510	Mustela_putorius_furo
ENSLOCG00000004240	vars	78	69.890	ENSMLUG00000013126	VARS	100	69.890	Myotis_lucifugus
ENSLOCG00000004240	vars	100	66.327	ENSNGAG00000012151	Vars	100	66.327	Nannospalax_galili
ENSLOCG00000004240	vars	100	75.489	ENSNBRG00000020520	vars	100	75.255	Neolamprologus_brichardi
ENSLOCG00000004240	vars	100	66.250	ENSNLEG00000006351	VARS	100	66.250	Nomascus_leucogenys
ENSLOCG00000004240	vars	100	65.023	ENSMEUG00000011378	VARS	100	64.969	Notamacropus_eugenii
ENSLOCG00000004240	vars	100	67.527	ENSOPRG00000003607	VARS	100	67.684	Ochotona_princeps
ENSLOCG00000004240	vars	100	65.596	ENSODEG00000017681	VARS	100	65.439	Octodon_degus
ENSLOCG00000004240	vars	100	74.824	ENSONIG00000013064	vars	99	78.746	Oreochromis_niloticus
ENSLOCG00000004240	vars	77	67.976	ENSOANG00000005400	VARS	98	67.861	Ornithorhynchus_anatinus
ENSLOCG00000004240	vars	100	65.493	ENSOCUG00000022463	VARS	100	64.656	Oryctolagus_cuniculus
ENSLOCG00000004240	vars	100	74.942	ENSORLG00000013063	vars	100	75.097	Oryzias_latipes
ENSLOCG00000004240	vars	100	74.980	ENSORLG00020003504	vars	100	75.215	Oryzias_latipes_hni
ENSLOCG00000004240	vars	100	74.961	ENSORLG00015009001	vars	100	75.430	Oryzias_latipes_hsok
ENSLOCG00000004240	vars	100	74.413	ENSOMEG00000015016	vars	100	74.648	Oryzias_melastigma
ENSLOCG00000004240	vars	100	66.406	ENSOGAG00000007515	VARS	100	66.406	Otolemur_garnettii
ENSLOCG00000004240	vars	100	66.641	ENSPPAG00000034012	VARS	100	66.641	Pan_paniscus
ENSLOCG00000004240	vars	100	66.484	ENSPPRG00000014855	VARS	100	66.562	Panthera_pardus
ENSLOCG00000004240	vars	86	70.718	ENSPTIG00000010462	VARS	94	70.669	Panthera_tigris_altaica
ENSLOCG00000004240	vars	100	66.719	ENSPTRG00000017985	VARS	100	66.719	Pan_troglodytes
ENSLOCG00000004240	vars	100	65.450	ENSPANG00000014565	VARS	100	65.450	Papio_anubis
ENSLOCG00000004240	vars	100	73.750	ENSPKIG00000016304	vars	100	73.359	Paramormyrops_kingsleyae
ENSLOCG00000004240	vars	100	73.896	ENSPMGG00000023909	vars	100	73.817	Periophthalmus_magnuspinnatus
ENSLOCG00000004240	vars	100	67.214	ENSPEMG00000006639	Vars	100	67.371	Peromyscus_maniculatus_bairdii
ENSLOCG00000004240	vars	100	66.328	ENSPCIG00000018553	VARS	100	66.197	Phascolarctos_cinereus
ENSLOCG00000004240	vars	100	74.902	ENSPFOG00000015690	vars	100	75.137	Poecilia_formosa
ENSLOCG00000004240	vars	100	74.980	ENSPLAG00000009590	vars	100	75.216	Poecilia_latipinna
ENSLOCG00000004240	vars	100	74.902	ENSPMEG00000004708	vars	100	75.137	Poecilia_mexicana
ENSLOCG00000004240	vars	100	71.317	ENSPREG00000013264	vars	100	71.317	Poecilia_reticulata
ENSLOCG00000004240	vars	100	65.391	ENSPPYG00000016460	VARS	100	65.156	Pongo_abelii
ENSLOCG00000004240	vars	86	69.355	ENSPCAG00000013565	VARS	86	69.355	Procavia_capensis
ENSLOCG00000004240	vars	100	66.823	ENSPCOG00000010942	VARS	100	66.823	Propithecus_coquereli
ENSLOCG00000004240	vars	100	64.325	ENSPVAG00000012403	VARS	100	64.219	Pteropus_vampyrus
ENSLOCG00000004240	vars	100	75.509	ENSPNYG00000022511	vars	100	75.274	Pundamilia_nyererei
ENSLOCG00000004240	vars	100	75.430	ENSPNAG00000020962	vars	100	75.039	Pygocentrus_nattereri
ENSLOCG00000004240	vars	100	66.588	ENSRNOG00000000867	Vars	100	66.432	Rattus_norvegicus
ENSLOCG00000004240	vars	100	67.188	ENSRBIG00000041669	VARS	100	66.953	Rhinopithecus_bieti
ENSLOCG00000004240	vars	100	67.188	ENSRROG00000045490	VARS	100	66.953	Rhinopithecus_roxellana
ENSLOCG00000004240	vars	100	66.250	ENSSBOG00000035402	VARS	100	66.484	Saimiri_boliviensis_boliviensis
ENSLOCG00000004240	vars	100	64.472	ENSSHAG00000006937	VARS	100	65.109	Sarcophilus_harrisii
ENSLOCG00000004240	vars	95	79.695	ENSSFOG00015014272	vars	98	79.695	Scleropages_formosus
ENSLOCG00000004240	vars	100	73.865	ENSSMAG00000009596	vars	99	73.552	Scophthalmus_maximus
ENSLOCG00000004240	vars	100	75.274	ENSSDUG00000014177	vars	100	75.117	Seriola_dumerili
ENSLOCG00000004240	vars	100	75.509	ENSSLDG00000025316	vars	100	75.352	Seriola_lalandi_dorsalis
ENSLOCG00000004240	vars	100	75.255	ENSSPAG00000017068	vars	100	75.491	Stegastes_partitus
ENSLOCG00000004240	vars	100	66.745	ENSSSCG00000038950	VARS	100	66.745	Sus_scrofa
ENSLOCG00000004240	vars	82	71.073	ENSTRUG00000012307	vars	98	70.897	Takifugu_rubripes
ENSLOCG00000004240	vars	100	75.589	ENSTNIG00000008011	vars	100	75.275	Tetraodon_nigroviridis
ENSLOCG00000004240	vars	100	60.360	ENSTTRG00000014128	VARS	100	60.360	Tursiops_truncatus
ENSLOCG00000004240	vars	100	64.770	ENSUAMG00000010424	VARS	100	64.692	Ursus_americanus
ENSLOCG00000004240	vars	100	61.154	ENSUMAG00000013486	VARS	100	61.154	Ursus_maritimus
ENSLOCG00000004240	vars	100	66.667	ENSVVUG00000021323	VARS	100	66.589	Vulpes_vulpes
ENSLOCG00000004240	vars	100	66.667	ENSXETG00000024076	vars	100	66.667	Xenopus_tropicalis
ENSLOCG00000004240	vars	100	74.077	ENSXCOG00000019172	vars	100	74.313	Xiphophorus_couchianus
ENSLOCG00000004240	vars	100	74.980	ENSXMAG00000010927	vars	100	75.216	Xiphophorus_maculatus