EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000004356 (Gene tree)
Gene ID: 102697518
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 1047 bases
Position: chrLG19:6229017-6230063
Accession: 102697518
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005203	LSM	PF01423.22	3.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005211	-	312	XM_006640012	ENSLOCP00000005203	103 (aa)	XP_006640075	W5M9Z4

Gene Model

Click here to download ENSLOCG00000004356's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004356's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000004356	lsm7	72	35.526	ENSLOCG00000015580	lsm8	73	35.526
ENSLOCG00000004356	lsm7	69	36.986	ENSLOCG00000015662	snrpg	83	36.986

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004356	lsm7	100	96.117	ENSG00000130332	LSM7	100	97.959	Homo_sapiens
ENSLOCG00000004356	lsm7	92	95.789	ENSAPOG00000015573	lsm7	82	95.789	Acanthochromis_polyacanthus
ENSLOCG00000004356	lsm7	100	96.117	ENSAMEG00000005484	LSM7	100	96.117	Ailuropoda_melanoleuca
ENSLOCG00000004356	lsm7	94	95.876	ENSACIG00000006498	lsm7	77	95.876	Amphilophus_citrinellus
ENSLOCG00000004356	lsm7	99	96.078	ENSAOCG00000001077	lsm7	93	96.078	Amphiprion_ocellaris
ENSLOCG00000004356	lsm7	100	96.117	ENSAPEG00000024447	lsm7	93	96.078	Amphiprion_percula
ENSLOCG00000004356	lsm7	100	96.117	ENSAPEG00000000694	lsm7	98	97.030	Amphiprion_percula
ENSLOCG00000004356	lsm7	98	97.030	ENSATEG00000008557	lsm7	98	97.030	Anabas_testudineus
ENSLOCG00000004356	lsm7	100	87.379	ENSANAG00000022222	-	100	87.379	Aotus_nancymaae
ENSLOCG00000004356	lsm7	100	96.117	ENSANAG00000037196	-	100	96.117	Aotus_nancymaae
ENSLOCG00000004356	lsm7	98	96.040	ENSACLG00000021021	lsm7	98	96.040	Astatotilapia_calliptera
ENSLOCG00000004356	lsm7	98	97.030	ENSAMXG00000037622	lsm7	98	97.030	Astyanax_mexicanus
ENSLOCG00000004356	lsm7	100	96.117	ENSBTAG00000004521	LSM7	100	96.117	Bos_taurus
ENSLOCG00000004356	lsm7	98	56.436	WBGene00003081	lsm-7	97	56.436	Caenorhabditis_elegans
ENSLOCG00000004356	lsm7	54	94.643	ENSCJAG00000039713	-	68	94.643	Callithrix_jacchus
ENSLOCG00000004356	lsm7	99	97.059	ENSCAFG00000019409	LSM7	99	97.059	Canis_familiaris
ENSLOCG00000004356	lsm7	98	98.020	ENSCAFG00020018168	LSM7	74	97.030	Canis_lupus_dingo
ENSLOCG00000004356	lsm7	100	97.087	ENSCHIG00000023663	LSM7	100	97.087	Capra_hircus
ENSLOCG00000004356	lsm7	69	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSLOCG00000004356	lsm7	100	96.117	ENSCPOG00000014025	LSM7	100	98.020	Cavia_porcellus
ENSLOCG00000004356	lsm7	98	98.020	ENSCCAG00000035456	LSM7	99	98.020	Cebus_capucinus
ENSLOCG00000004356	lsm7	100	96.117	ENSCATG00000023543	LSM7	100	96.117	Cercocebus_atys
ENSLOCG00000004356	lsm7	100	96.117	ENSCLAG00000011635	LSM7	100	96.117	Chinchilla_lanigera
ENSLOCG00000004356	lsm7	100	96.117	ENSCSAG00000011599	LSM7	100	96.117	Chlorocebus_sabaeus
ENSLOCG00000004356	lsm7	70	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSLOCG00000004356	lsm7	93	79.167	ENSCING00000022134	-	97	79.167	Ciona_intestinalis
ENSLOCG00000004356	lsm7	100	96.117	ENSCANG00000035525	LSM7	100	96.117	Colobus_angolensis_palliatus
ENSLOCG00000004356	lsm7	100	95.146	ENSCGRG00001000807	-	100	95.146	Cricetulus_griseus_chok1gshd
ENSLOCG00000004356	lsm7	87	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSLOCG00000004356	lsm7	99	97.059	ENSCGRG00000014355	-	98	97.059	Cricetulus_griseus_crigri
ENSLOCG00000004356	lsm7	87	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSLOCG00000004356	lsm7	99	96.078	ENSCSEG00000014900	lsm7	86	97.030	Cynoglossus_semilaevis
ENSLOCG00000004356	lsm7	99	97.059	ENSCVAG00000021091	lsm7	94	97.059	Cyprinodon_variegatus
ENSLOCG00000004356	lsm7	98	97.030	ENSDARG00000058328	lsm7	98	97.030	Danio_rerio
ENSLOCG00000004356	lsm7	98	96.040	ENSDORG00000024460	Lsm7	99	96.040	Dipodomys_ordii
ENSLOCG00000004356	lsm7	94	75.510	FBgn0261068	LSm7	89	75.510	Drosophila_melanogaster
ENSLOCG00000004356	lsm7	99	95.098	ENSETEG00000012788	LSM7	100	95.098	Echinops_telfairi
ENSLOCG00000004356	lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSLOCG00000004356	lsm7	100	86.408	ENSEBUG00000016992	lsm7	99	86.408	Eptatretus_burgeri
ENSLOCG00000004356	lsm7	100	92.233	ENSECAG00000001440	LSM7	66	92.233	Equus_caballus
ENSLOCG00000004356	lsm7	100	95.146	ENSFCAG00000003445	LSM7	100	95.146	Felis_catus
ENSLOCG00000004356	lsm7	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSLOCG00000004356	lsm7	93	97.917	ENSFDAG00000007661	LSM7	100	97.917	Fukomys_damarensis
ENSLOCG00000004356	lsm7	98	98.020	ENSFHEG00000006349	lsm7	90	98.020	Fundulus_heteroclitus
ENSLOCG00000004356	lsm7	100	94.175	ENSGMOG00000013320	lsm7	100	94.175	Gadus_morhua
ENSLOCG00000004356	lsm7	98	98.020	ENSGAFG00000013902	lsm7	98	98.020	Gambusia_affinis
ENSLOCG00000004356	lsm7	99	96.078	ENSGACG00000010390	lsm7	99	96.078	Gasterosteus_aculeatus
ENSLOCG00000004356	lsm7	100	96.117	ENSGGOG00000010172	LSM7	100	96.117	Gorilla_gorilla
ENSLOCG00000004356	lsm7	99	96.078	ENSHBUG00000004616	lsm7	98	96.040	Haplochromis_burtoni
ENSLOCG00000004356	lsm7	100	96.117	ENSHGLG00000010587	LSM7	100	96.117	Heterocephalus_glaber_female
ENSLOCG00000004356	lsm7	100	96.117	ENSHGLG00100000852	LSM7	100	96.117	Heterocephalus_glaber_male
ENSLOCG00000004356	lsm7	98	96.040	ENSHCOG00000020252	lsm7	100	96.040	Hippocampus_comes
ENSLOCG00000004356	lsm7	98	97.030	ENSIPUG00000024724	lsm7	98	97.030	Ictalurus_punctatus
ENSLOCG00000004356	lsm7	99	98.039	ENSSTOG00000028372	LSM7	99	98.020	Ictidomys_tridecemlineatus
ENSLOCG00000004356	lsm7	97	98.000	ENSJJAG00000001936	Lsm7	97	98.000	Jaculus_jaculus
ENSLOCG00000004356	lsm7	98	98.020	ENSKMAG00000022151	lsm7	98	98.020	Kryptolebias_marmoratus
ENSLOCG00000004356	lsm7	98	97.030	ENSLBEG00000005203	lsm7	98	97.030	Labrus_bergylta
ENSLOCG00000004356	lsm7	100	97.087	ENSLACG00000015700	LSM7	100	97.087	Latimeria_chalumnae
ENSLOCG00000004356	lsm7	99	98.039	ENSLAFG00000029302	LSM7	99	98.039	Loxodonta_africana
ENSLOCG00000004356	lsm7	100	96.117	ENSMFAG00000044572	LSM7	100	96.117	Macaca_fascicularis
ENSLOCG00000004356	lsm7	100	96.117	ENSMMUG00000000452	LSM7	99	98.020	Macaca_mulatta
ENSLOCG00000004356	lsm7	100	96.117	ENSMNEG00000004393	LSM7	100	96.117	Macaca_nemestrina
ENSLOCG00000004356	lsm7	100	96.117	ENSMLEG00000030852	LSM7	100	98.020	Mandrillus_leucophaeus
ENSLOCG00000004356	lsm7	98	96.040	ENSMAMG00000005410	lsm7	98	96.040	Mastacembelus_armatus
ENSLOCG00000004356	lsm7	98	96.040	ENSMZEG00005028055	lsm7	98	96.040	Maylandia_zebra
ENSLOCG00000004356	lsm7	100	96.117	ENSMGAG00000000750	LSM7	89	96.117	Meleagris_gallopavo
ENSLOCG00000004356	lsm7	100	96.117	ENSMAUG00000009276	Lsm7	100	96.117	Mesocricetus_auratus
ENSLOCG00000004356	lsm7	100	96.117	ENSMICG00000028619	-	100	96.117	Microcebus_murinus
ENSLOCG00000004356	lsm7	100	96.117	ENSMICG00000009988	-	100	96.117	Microcebus_murinus
ENSLOCG00000004356	lsm7	100	95.146	ENSMOCG00000016925	Lsm7	100	95.146	Microtus_ochrogaster
ENSLOCG00000004356	lsm7	98	97.030	ENSMMOG00000019645	lsm7	96	97.030	Mola_mola
ENSLOCG00000004356	lsm7	100	97.087	ENSMODG00000004722	LSM7	100	97.087	Monodelphis_domestica
ENSLOCG00000004356	lsm7	98	96.040	ENSMALG00000014511	lsm7	78	96.040	Monopterus_albus
ENSLOCG00000004356	lsm7	99	95.098	MGP_CAROLIEiJ_G0015607	Lsm7	99	95.098	Mus_caroli
ENSLOCG00000004356	lsm7	99	95.098	ENSMUSG00000035215	Lsm7	99	95.098	Mus_musculus
ENSLOCG00000004356	lsm7	99	95.098	MGP_PahariEiJ_G0031020	Lsm7	99	95.098	Mus_pahari
ENSLOCG00000004356	lsm7	99	95.098	MGP_SPRETEiJ_G0016425	Lsm7	99	95.098	Mus_spretus
ENSLOCG00000004356	lsm7	97	92.000	ENSMLUG00000024002	-	92	92.000	Myotis_lucifugus
ENSLOCG00000004356	lsm7	100	96.117	ENSMLUG00000013097	-	100	96.117	Myotis_lucifugus
ENSLOCG00000004356	lsm7	100	94.175	ENSNGAG00000021637	Lsm7	100	94.175	Nannospalax_galili
ENSLOCG00000004356	lsm7	99	96.078	ENSNBRG00000015770	lsm7	88	96.078	Neolamprologus_brichardi
ENSLOCG00000004356	lsm7	98	96.040	ENSNBRG00000001237	-	81	96.040	Neolamprologus_brichardi
ENSLOCG00000004356	lsm7	100	96.117	ENSNLEG00000002265	LSM7	100	96.117	Nomascus_leucogenys
ENSLOCG00000004356	lsm7	100	96.117	ENSODEG00000013590	-	100	96.117	Octodon_degus
ENSLOCG00000004356	lsm7	98	91.089	ENSODEG00000018769	-	98	91.089	Octodon_degus
ENSLOCG00000004356	lsm7	100	75.728	ENSODEG00000008190	-	100	75.728	Octodon_degus
ENSLOCG00000004356	lsm7	100	94.175	ENSONIG00000001801	lsm7	89	94.175	Oreochromis_niloticus
ENSLOCG00000004356	lsm7	100	96.117	ENSORLG00000023951	lsm7	98	97.030	Oryzias_latipes
ENSLOCG00000004356	lsm7	100	96.117	ENSORLG00020022226	lsm7	98	97.030	Oryzias_latipes_hni
ENSLOCG00000004356	lsm7	100	96.117	ENSORLG00015020044	lsm7	94	96.078	Oryzias_latipes_hsok
ENSLOCG00000004356	lsm7	99	96.078	ENSOMEG00000012806	lsm7	98	97.030	Oryzias_melastigma
ENSLOCG00000004356	lsm7	99	96.078	ENSOGAG00000000144	-	100	96.078	Otolemur_garnettii
ENSLOCG00000004356	lsm7	98	86.139	ENSOGAG00000024373	-	98	86.139	Otolemur_garnettii
ENSLOCG00000004356	lsm7	100	97.087	ENSOARG00000014013	LSM7	100	97.087	Ovis_aries
ENSLOCG00000004356	lsm7	100	96.117	ENSPPAG00000026500	LSM7	100	96.117	Pan_paniscus
ENSLOCG00000004356	lsm7	100	95.146	ENSPPRG00000008624	LSM7	100	95.146	Panthera_pardus
ENSLOCG00000004356	lsm7	98	97.030	ENSPTIG00000016252	LSM7	98	97.030	Panthera_tigris_altaica
ENSLOCG00000004356	lsm7	100	96.117	ENSPTRG00000010233	LSM7	100	96.117	Pan_troglodytes
ENSLOCG00000004356	lsm7	100	96.117	ENSPANG00000020668	LSM7	100	96.117	Papio_anubis
ENSLOCG00000004356	lsm7	98	99.010	ENSPKIG00000011325	lsm7	98	99.010	Paramormyrops_kingsleyae
ENSLOCG00000004356	lsm7	98	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSLOCG00000004356	lsm7	98	97.030	ENSPMGG00000006498	lsm7	98	97.030	Periophthalmus_magnuspinnatus
ENSLOCG00000004356	lsm7	100	97.087	ENSPCIG00000030454	LSM7	99	99.010	Phascolarctos_cinereus
ENSLOCG00000004356	lsm7	100	96.117	ENSPFOG00000012467	lsm7	91	96.117	Poecilia_formosa
ENSLOCG00000004356	lsm7	99	97.059	ENSPLAG00000000252	lsm7	94	97.030	Poecilia_latipinna
ENSLOCG00000004356	lsm7	100	96.117	ENSPMEG00000000587	lsm7	94	97.030	Poecilia_mexicana
ENSLOCG00000004356	lsm7	77	76.250	ENSPREG00000016718	lsm7	63	77.215	Poecilia_reticulata
ENSLOCG00000004356	lsm7	71	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSLOCG00000004356	lsm7	100	96.117	ENSPCOG00000017177	LSM7	99	98.020	Propithecus_coquereli
ENSLOCG00000004356	lsm7	98	96.040	ENSPNYG00000006938	lsm7	98	96.040	Pundamilia_nyererei
ENSLOCG00000004356	lsm7	98	97.030	ENSPNAG00000010141	lsm7	99	97.030	Pygocentrus_nattereri
ENSLOCG00000004356	lsm7	99	96.078	ENSRNOG00000019552	Lsm7	99	96.078	Rattus_norvegicus
ENSLOCG00000004356	lsm7	100	96.117	ENSRBIG00000035978	LSM7	100	96.117	Rhinopithecus_bieti
ENSLOCG00000004356	lsm7	100	96.117	ENSRROG00000034044	LSM7	100	96.117	Rhinopithecus_roxellana
ENSLOCG00000004356	lsm7	83	47.191	YNL147W	-	77	47.191	Saccharomyces_cerevisiae
ENSLOCG00000004356	lsm7	100	96.117	ENSSBOG00000034899	LSM7	100	96.117	Saimiri_boliviensis_boliviensis
ENSLOCG00000004356	lsm7	98	97.030	ENSSFOG00015006728	lsm7	98	97.030	Scleropages_formosus
ENSLOCG00000004356	lsm7	99	97.059	ENSSMAG00000004195	lsm7	93	97.059	Scophthalmus_maximus
ENSLOCG00000004356	lsm7	98	97.030	ENSSDUG00000001863	lsm7	98	97.030	Seriola_dumerili
ENSLOCG00000004356	lsm7	98	97.030	ENSSLDG00000016339	lsm7	98	97.030	Seriola_lalandi_dorsalis
ENSLOCG00000004356	lsm7	98	97.030	ENSSPAG00000015221	lsm7	98	97.030	Stegastes_partitus
ENSLOCG00000004356	lsm7	98	98.020	ENSSSCG00000013463	LSM7	99	98.020	Sus_scrofa
ENSLOCG00000004356	lsm7	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSLOCG00000004356	lsm7	98	97.030	ENSTRUG00000022913	lsm7	98	97.030	Takifugu_rubripes
ENSLOCG00000004356	lsm7	98	97.030	ENSTNIG00000015525	lsm7	98	97.030	Tetraodon_nigroviridis
ENSLOCG00000004356	lsm7	68	85.714	ENSTBEG00000016602	LSM7	100	85.714	Tupaia_belangeri
ENSLOCG00000004356	lsm7	100	96.117	ENSUAMG00000000912	LSM7	86	96.117	Ursus_americanus
ENSLOCG00000004356	lsm7	98	97.030	ENSUMAG00000006556	LSM7	79	97.030	Ursus_maritimus
ENSLOCG00000004356	lsm7	69	97.183	ENSVVUG00000002640	LSM7	65	97.183	Vulpes_vulpes
ENSLOCG00000004356	lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSLOCG00000004356	lsm7	98	98.020	ENSXCOG00000002572	lsm7	99	98.020	Xiphophorus_couchianus
ENSLOCG00000004356	lsm7	100	97.087	ENSXMAG00000018630	lsm7	98	98.020	Xiphophorus_maculatus