EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000004643 (Gene tree)
Gene ID: 102698916
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 68406 bases
Position: chrLG19:6603158-6671563
Accession: 102698916
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005583	ResIII	PF04851.15	1e-07	1	1
ENSLOCP00000005572	ResIII	PF04851.15	1.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005591	-	4044	XM_006640019	ENSLOCP00000005583	1348 (aa)	-	W5MB24
ENSLOCT00000005580	-	5491	-	ENSLOCP00000005572	1469 (aa)	XP_015221065	W5MB13

Gene Model

Click here to download ENSLOCG00000004643's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004643's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000004643	si:ch73-63e15.2	69	66.440	ENSLOCG00000005725	sbno1	78	60.811

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004643	si:ch73-63e15.2	84	69.896	ENSG00000064932	SBNO2	97	65.469	Homo_sapiens
ENSLOCG00000004643	si:ch73-63e15.2	89	86.147	ENSAPOG00000003185	si:ch73-63e15.2	93	81.083	Acanthochromis_polyacanthus
ENSLOCG00000004643	si:ch73-63e15.2	90	85.349	ENSAOCG00000016581	si:ch73-63e15.2	94	84.848	Amphiprion_ocellaris
ENSLOCG00000004643	si:ch73-63e15.2	90	85.434	ENSAPEG00000008862	si:ch73-63e15.2	78	85.434	Amphiprion_percula
ENSLOCG00000004643	si:ch73-63e15.2	86	84.760	ENSATEG00000023838	si:ch73-63e15.2	99	80.368	Anabas_testudineus
ENSLOCG00000004643	si:ch73-63e15.2	84	75.043	ENSAPLG00000007158	SBNO2	98	70.510	Anas_platyrhynchos
ENSLOCG00000004643	si:ch73-63e15.2	84	69.618	ENSANAG00000026685	SBNO2	96	65.588	Aotus_nancymaae
ENSLOCG00000004643	si:ch73-63e15.2	85	83.463	ENSACLG00000005090	si:ch73-63e15.2	90	73.096	Astatotilapia_calliptera
ENSLOCG00000004643	si:ch73-63e15.2	99	73.773	ENSAMXG00000015881	si:ch73-63e15.2	99	73.232	Astyanax_mexicanus
ENSLOCG00000004643	si:ch73-63e15.2	85	81.526	ENSAMXG00000018868	sbno2a	95	83.229	Astyanax_mexicanus
ENSLOCG00000004643	si:ch73-63e15.2	84	70.747	ENSBTAG00000020780	SBNO2	97	65.328	Bos_taurus
ENSLOCG00000004643	si:ch73-63e15.2	83	71.291	ENSCAFG00000019543	SBNO2	90	67.920	Canis_familiaris
ENSLOCG00000004643	si:ch73-63e15.2	83	71.291	ENSCAFG00020017115	SBNO2	96	67.920	Canis_lupus_dingo
ENSLOCG00000004643	si:ch73-63e15.2	83	70.706	ENSCHIG00000026127	SBNO2	99	62.145	Capra_hircus
ENSLOCG00000004643	si:ch73-63e15.2	82	69.075	ENSCAPG00000005731	SBNO2	100	65.747	Cavia_aperea
ENSLOCG00000004643	si:ch73-63e15.2	83	69.089	ENSCPOG00000007477	SBNO2	91	65.779	Cavia_porcellus
ENSLOCG00000004643	si:ch73-63e15.2	84	69.531	ENSCCAG00000037518	SBNO2	96	65.487	Cebus_capucinus
ENSLOCG00000004643	si:ch73-63e15.2	84	70.009	ENSCATG00000037046	SBNO2	99	62.563	Cercocebus_atys
ENSLOCG00000004643	si:ch73-63e15.2	84	70.906	ENSCLAG00000010178	SBNO2	99	71.004	Chinchilla_lanigera
ENSLOCG00000004643	si:ch73-63e15.2	82	70.432	ENSCSAG00000012317	SBNO2	99	62.563	Chlorocebus_sabaeus
ENSLOCG00000004643	si:ch73-63e15.2	88	68.626	ENSCPBG00000008920	SBNO2	92	73.159	Chrysemys_picta_bellii
ENSLOCG00000004643	si:ch73-63e15.2	80	70.018	ENSCANG00000036745	SBNO2	95	69.964	Colobus_angolensis_palliatus
ENSLOCG00000004643	si:ch73-63e15.2	84	68.028	ENSCGRG00001023960	Sbno2	91	64.673	Cricetulus_griseus_chok1gshd
ENSLOCG00000004643	si:ch73-63e15.2	84	69.271	ENSCGRG00000011984	Sbno2	91	65.817	Cricetulus_griseus_crigri
ENSLOCG00000004643	si:ch73-63e15.2	85	81.645	ENSCSEG00000006856	si:ch73-63e15.2	95	82.537	Cynoglossus_semilaevis
ENSLOCG00000004643	si:ch73-63e15.2	85	82.762	ENSCVAG00000005663	si:ch73-63e15.2	80	81.963	Cyprinodon_variegatus
ENSLOCG00000004643	si:ch73-63e15.2	92	75.650	ENSDARG00000098801	sbno2a	98	74.707	Danio_rerio
ENSLOCG00000004643	si:ch73-63e15.2	99	72.214	ENSDARG00000016188	SBNO2	98	72.464	Danio_rerio
ENSLOCG00000004643	si:ch73-63e15.2	83	71.055	ENSDORG00000002916	Sbno2	91	67.840	Dipodomys_ordii
ENSLOCG00000004643	si:ch73-63e15.2	84	70.287	ENSEASG00005021621	SBNO2	88	70.670	Equus_asinus_asinus
ENSLOCG00000004643	si:ch73-63e15.2	84	70.374	ENSECAG00000011827	SBNO2	88	70.957	Equus_caballus
ENSLOCG00000004643	si:ch73-63e15.2	99	75.265	ENSELUG00000020457	si:ch73-63e15.2	90	78.647	Esox_lucius
ENSLOCG00000004643	si:ch73-63e15.2	84	74.527	ENSFALG00000013988	SBNO2	92	70.621	Ficedula_albicollis
ENSLOCG00000004643	si:ch73-63e15.2	80	69.050	ENSFDAG00000015186	SBNO2	91	65.118	Fukomys_damarensis
ENSLOCG00000004643	si:ch73-63e15.2	85	83.608	ENSFHEG00000022262	si:ch73-63e15.2	76	83.767	Fundulus_heteroclitus
ENSLOCG00000004643	si:ch73-63e15.2	84	83.628	ENSGMOG00000007542	si:ch73-63e15.2	95	83.628	Gadus_morhua
ENSLOCG00000004643	si:ch73-63e15.2	99	67.174	ENSGALG00000037522	SBNO2	92	69.133	Gallus_gallus
ENSLOCG00000004643	si:ch73-63e15.2	85	84.087	ENSGAFG00000004860	si:ch73-63e15.2	91	84.087	Gambusia_affinis
ENSLOCG00000004643	si:ch73-63e15.2	84	84.448	ENSGACG00000013190	si:ch73-63e15.2	100	81.152	Gasterosteus_aculeatus
ENSLOCG00000004643	si:ch73-63e15.2	99	67.686	ENSGAGG00000008348	SBNO2	90	73.459	Gopherus_agassizii
ENSLOCG00000004643	si:ch73-63e15.2	85	83.536	ENSHBUG00000010742	si:ch73-63e15.2	89	75.559	Haplochromis_burtoni
ENSLOCG00000004643	si:ch73-63e15.2	83	70.629	ENSHGLG00000008739	SBNO2	91	66.693	Heterocephalus_glaber_female
ENSLOCG00000004643	si:ch73-63e15.2	84	70.451	ENSHGLG00100005269	SBNO2	99	70.547	Heterocephalus_glaber_male
ENSLOCG00000004643	si:ch73-63e15.2	85	82.143	ENSHCOG00000000884	si:ch73-63e15.2	91	78.107	Hippocampus_comes
ENSLOCG00000004643	si:ch73-63e15.2	85	81.739	ENSIPUG00000000537	si:ch73-63e15.2	85	81.739	Ictalurus_punctatus
ENSLOCG00000004643	si:ch73-63e15.2	90	78.543	ENSIPUG00000019672	sbno2	99	77.906	Ictalurus_punctatus
ENSLOCG00000004643	si:ch73-63e15.2	83	70.819	ENSSTOG00000025832	SBNO2	91	68.244	Ictidomys_tridecemlineatus
ENSLOCG00000004643	si:ch73-63e15.2	83	67.393	ENSJJAG00000017397	Sbno2	91	64.343	Jaculus_jaculus
ENSLOCG00000004643	si:ch73-63e15.2	85	84.055	ENSKMAG00000005541	si:ch73-63e15.2	78	83.590	Kryptolebias_marmoratus
ENSLOCG00000004643	si:ch73-63e15.2	85	85.026	ENSLBEG00000025016	si:ch73-63e15.2	95	85.486	Labrus_bergylta
ENSLOCG00000004643	si:ch73-63e15.2	82	66.549	ENSLAFG00000008824	SBNO2	89	66.813	Loxodonta_africana
ENSLOCG00000004643	si:ch73-63e15.2	84	68.512	ENSMFAG00000040030	SBNO2	90	68.517	Macaca_fascicularis
ENSLOCG00000004643	si:ch73-63e15.2	82	70.521	ENSMMUG00000010886	SBNO2	99	62.563	Macaca_mulatta
ENSLOCG00000004643	si:ch73-63e15.2	84	69.922	ENSMNEG00000039927	SBNO2	97	65.520	Macaca_nemestrina
ENSLOCG00000004643	si:ch73-63e15.2	75	71.511	ENSMLEG00000038556	SBNO2	98	66.925	Mandrillus_leucophaeus
ENSLOCG00000004643	si:ch73-63e15.2	86	85.271	ENSMAMG00000018758	si:ch73-63e15.2	82	80.316	Mastacembelus_armatus
ENSLOCG00000004643	si:ch73-63e15.2	96	75.000	ENSMZEG00005010682	si:ch73-63e15.2	90	73.077	Maylandia_zebra
ENSLOCG00000004643	si:ch73-63e15.2	85	74.169	ENSMGAG00000003801	SBNO2	91	74.169	Meleagris_gallopavo
ENSLOCG00000004643	si:ch73-63e15.2	83	69.345	ENSMAUG00000008034	Sbno2	98	62.271	Mesocricetus_auratus
ENSLOCG00000004643	si:ch73-63e15.2	84	70.374	ENSMICG00000013071	SBNO2	97	65.938	Microcebus_murinus
ENSLOCG00000004643	si:ch73-63e15.2	84	69.679	ENSMOCG00000010504	Sbno2	99	62.337	Microtus_ochrogaster
ENSLOCG00000004643	si:ch73-63e15.2	83	73.094	ENSMODG00000005382	SBNO2	89	68.755	Monodelphis_domestica
ENSLOCG00000004643	si:ch73-63e15.2	69	78.891	ENSMALG00000021831	si:ch73-63e15.2	96	78.891	Monopterus_albus
ENSLOCG00000004643	si:ch73-63e15.2	84	68.604	ENSMUSG00000035673	Sbno2	99	65.712	Mus_musculus
ENSLOCG00000004643	si:ch73-63e15.2	84	68.690	MGP_PahariEiJ_G0030976	Sbno2	91	65.817	Mus_pahari
ENSLOCG00000004643	si:ch73-63e15.2	84	68.951	MGP_SPRETEiJ_G0016381	Sbno2	97	65.871	Mus_spretus
ENSLOCG00000004643	si:ch73-63e15.2	71	73.069	ENSMPUG00000008747	SBNO2	99	69.026	Mustela_putorius_furo
ENSLOCG00000004643	si:ch73-63e15.2	83	69.023	ENSNGAG00000004308	Sbno2	93	65.490	Nannospalax_galili
ENSLOCG00000004643	si:ch73-63e15.2	81	83.942	ENSNBRG00000022968	si:ch73-63e15.2	96	85.814	Neolamprologus_brichardi
ENSLOCG00000004643	si:ch73-63e15.2	78	69.321	ENSNLEG00000001305	SBNO2	97	64.496	Nomascus_leucogenys
ENSLOCG00000004643	si:ch73-63e15.2	69	68.896	ENSMEUG00000013511	-	78	68.896	Notamacropus_eugenii
ENSLOCG00000004643	si:ch73-63e15.2	83	69.224	ENSOPRG00000017238	SBNO2	94	69.599	Ochotona_princeps
ENSLOCG00000004643	si:ch73-63e15.2	83	69.459	ENSODEG00000011822	SBNO2	94	65.122	Octodon_degus
ENSLOCG00000004643	si:ch73-63e15.2	90	80.468	ENSONIG00000002490	si:ch73-63e15.2	98	80.468	Oreochromis_niloticus
ENSLOCG00000004643	si:ch73-63e15.2	83	84.350	ENSORLG00000000913	si:ch73-63e15.2	80	81.519	Oryzias_latipes
ENSLOCG00000004643	si:ch73-63e15.2	83	84.350	ENSORLG00020010978	si:ch73-63e15.2	80	81.519	Oryzias_latipes_hni
ENSLOCG00000004643	si:ch73-63e15.2	83	84.439	ENSORLG00015000202	si:ch73-63e15.2	77	84.164	Oryzias_latipes_hsok
ENSLOCG00000004643	si:ch73-63e15.2	84	84.528	ENSOMEG00000000359	si:ch73-63e15.2	79	80.815	Oryzias_melastigma
ENSLOCG00000004643	si:ch73-63e15.2	83	68.439	ENSOARG00000011130	SBNO2	93	64.837	Ovis_aries
ENSLOCG00000004643	si:ch73-63e15.2	84	68.954	ENSPPAG00000032482	SBNO2	90	69.072	Pan_paniscus
ENSLOCG00000004643	si:ch73-63e15.2	84	69.896	ENSPTRG00000010185	SBNO2	88	70.052	Pan_troglodytes
ENSLOCG00000004643	si:ch73-63e15.2	84	66.379	ENSPANG00000009658	SBNO2	99	59.522	Papio_anubis
ENSLOCG00000004643	si:ch73-63e15.2	75	80.920	ENSPKIG00000009707	-	87	79.040	Paramormyrops_kingsleyae
ENSLOCG00000004643	si:ch73-63e15.2	99	77.557	ENSPKIG00000024201	si:ch73-63e15.2	99	77.239	Paramormyrops_kingsleyae
ENSLOCG00000004643	si:ch73-63e15.2	71	76.118	ENSPSIG00000002852	SBNO2	99	76.220	Pelodiscus_sinensis
ENSLOCG00000004643	si:ch73-63e15.2	90	78.089	ENSPMGG00000014375	si:ch73-63e15.2	93	78.089	Periophthalmus_magnuspinnatus
ENSLOCG00000004643	si:ch73-63e15.2	84	67.944	ENSPEMG00000024122	Sbno2	99	61.010	Peromyscus_maniculatus_bairdii
ENSLOCG00000004643	si:ch73-63e15.2	80	74.549	ENSPCIG00000011264	SBNO2	89	69.683	Phascolarctos_cinereus
ENSLOCG00000004643	si:ch73-63e15.2	87	82.502	ENSPFOG00000004096	si:ch73-63e15.2	99	82.840	Poecilia_formosa
ENSLOCG00000004643	si:ch73-63e15.2	87	82.532	ENSPLAG00000014653	si:ch73-63e15.2	80	81.955	Poecilia_latipinna
ENSLOCG00000004643	si:ch73-63e15.2	87	82.447	ENSPMEG00000002129	si:ch73-63e15.2	96	78.902	Poecilia_mexicana
ENSLOCG00000004643	si:ch73-63e15.2	87	82.333	ENSPREG00000006755	si:ch73-63e15.2	80	79.827	Poecilia_reticulata
ENSLOCG00000004643	si:ch73-63e15.2	78	70.489	ENSPCAG00000012256	SBNO2	79	70.318	Procavia_capensis
ENSLOCG00000004643	si:ch73-63e15.2	84	63.676	ENSPCOG00000015216	SBNO2	97	60.140	Propithecus_coquereli
ENSLOCG00000004643	si:ch73-63e15.2	85	83.478	ENSPNYG00000019926	si:ch73-63e15.2	99	70.107	Pundamilia_nyererei
ENSLOCG00000004643	si:ch73-63e15.2	90	79.355	ENSPNAG00000020260	si:ch73-63e15.2	99	74.799	Pygocentrus_nattereri
ENSLOCG00000004643	si:ch73-63e15.2	92	76.761	ENSPNAG00000026609	sbno2a	99	71.346	Pygocentrus_nattereri
ENSLOCG00000004643	si:ch73-63e15.2	84	69.418	ENSRNOG00000013987	Sbno2	97	65.623	Rattus_norvegicus
ENSLOCG00000004643	si:ch73-63e15.2	78	67.864	ENSRBIG00000009740	SBNO2	88	67.585	Rhinopithecus_bieti
ENSLOCG00000004643	si:ch73-63e15.2	74	73.325	ENSRROG00000044671	SBNO2	96	73.350	Rhinopithecus_roxellana
ENSLOCG00000004643	si:ch73-63e15.2	84	69.531	ENSSBOG00000023562	SBNO2	99	62.235	Saimiri_boliviensis_boliviensis
ENSLOCG00000004643	si:ch73-63e15.2	82	72.639	ENSSHAG00000010241	SBNO2	97	72.639	Sarcophilus_harrisii
ENSLOCG00000004643	si:ch73-63e15.2	99	72.348	ENSSFOG00015005861	si:ch73-63e15.2	96	81.970	Scleropages_formosus
ENSLOCG00000004643	si:ch73-63e15.2	85	85.516	ENSSMAG00000012489	si:ch73-63e15.2	76	83.741	Scophthalmus_maximus
ENSLOCG00000004643	si:ch73-63e15.2	84	86.527	ENSSDUG00000003527	si:ch73-63e15.2	74	86.527	Seriola_dumerili
ENSLOCG00000004643	si:ch73-63e15.2	85	85.851	ENSSLDG00000004623	si:ch73-63e15.2	74	85.851	Seriola_lalandi_dorsalis
ENSLOCG00000004643	si:ch73-63e15.2	88	86.332	ENSSPAG00000017717	si:ch73-63e15.2	76	86.332	Stegastes_partitus
ENSLOCG00000004643	si:ch73-63e15.2	84	71.268	ENSSSCG00000030042	SBNO2	96	67.252	Sus_scrofa
ENSLOCG00000004643	si:ch73-63e15.2	81	84.846	ENSTRUG00000018193	si:ch73-63e15.2	86	84.936	Takifugu_rubripes
ENSLOCG00000004643	si:ch73-63e15.2	76	71.851	ENSUAMG00000006568	SBNO2	89	76.310	Ursus_americanus
ENSLOCG00000004643	si:ch73-63e15.2	83	71.291	ENSVVUG00000022823	SBNO2	89	67.920	Vulpes_vulpes
ENSLOCG00000004643	si:ch73-63e15.2	76	76.673	ENSXETG00000021579	sbno2	90	77.126	Xenopus_tropicalis
ENSLOCG00000004643	si:ch73-63e15.2	73	83.439	ENSXCOG00000009209	si:ch73-63e15.2	89	85.459	Xiphophorus_couchianus
ENSLOCG00000004643	si:ch73-63e15.2	85	83.290	ENSXMAG00000012091	si:ch73-63e15.2	85	85.341	Xiphophorus_maculatus