EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000004808 (Gene tree)
Gene ID: 102687171
Gene Symbol: TRANK1
Alias: KIAA0342|LBA1
Full Name: tetratricopeptide repeat and ankyrin repeat containing 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 37084 bases
Position: chrLG11:13245595-13282678
Accession: 102687171
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005792	UvrD-helicase	PF00580.21	1.2e-06	1	1
ENSLOCP00000005810	UvrD-helicase	PF00580.21	1.3e-06	1	1
ENSLOCP00000005771	UvrD-helicase	PF00580.21	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005779	TRANK1-201	11282	XM_006635720	ENSLOCP00000005771	2916 (aa)	XP_015212780	W5MBL2
ENSLOCT00000005818	TRANK1-203	8685	-	ENSLOCP00000005810	2894 (aa)	-	W5MBQ1
ENSLOCT00000005800	TRANK1-202	8831	-	ENSLOCP00000005792	2878 (aa)	-	W5MBN3

Gene Model

Click here to download ENSLOCG00000004808's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004808's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004808	TRANK1	84	47.625	ENSAPLG00000010356	TRANK1	99	47.642	Anas_platyrhynchos
ENSLOCG00000004808	TRANK1	55	51.749	ENSCAFG00020001387	TRANK1	99	51.928	Canis_lupus_dingo
ENSLOCG00000004808	TRANK1	99	46.738	ENSTSYG00000025860	TRANK1	99	46.620	Carlito_syrichta
ENSLOCG00000004808	TRANK1	99	46.662	ENSCLAG00000003643	TRANK1	98	47.274	Chinchilla_lanigera
ENSLOCG00000004808	TRANK1	97	53.708	ENSCPBG00000013529	TRANK1	98	53.708	Chrysemys_picta_bellii
ENSLOCG00000004808	TRANK1	99	47.452	ENSCANG00000039915	TRANK1	99	47.436	Colobus_angolensis_palliatus
ENSLOCG00000004808	TRANK1	97	47.367	ENSDNOG00000003573	TRANK1	99	47.331	Dasypus_novemcinctus
ENSLOCG00000004808	TRANK1	100	47.715	ENSEASG00005007374	TRANK1	99	52.213	Equus_asinus_asinus
ENSLOCG00000004808	TRANK1	100	47.849	ENSECAG00000018264	TRANK1	99	47.885	Equus_caballus
ENSLOCG00000004808	TRANK1	82	47.634	ENSEEUG00000008528	TRANK1	99	47.669	Erinaceus_europaeus
ENSLOCG00000004808	TRANK1	99	45.898	ENSFALG00000002875	TRANK1	99	45.696	Ficedula_albicollis
ENSLOCG00000004808	TRANK1	72	53.435	ENSGALG00000037629	TRANK1	100	53.306	Gallus_gallus
ENSLOCG00000004808	TRANK1	90	48.830	ENSGAGG00000009012	TRANK1	99	49.025	Gopherus_agassizii
ENSLOCG00000004808	TRANK1	99	46.874	ENSMGAG00000011934	TRANK1	99	46.895	Meleagris_gallopavo
ENSLOCG00000004808	TRANK1	99	46.983	ENSMLUG00000003537	TRANK1	99	47.292	Myotis_lucifugus
ENSLOCG00000004808	TRANK1	99	46.510	ENSODEG00000003882	TRANK1	97	47.314	Octodon_degus
ENSLOCG00000004808	TRANK1	99	47.450	ENSPSIG00000010217	TRANK1	99	47.337	Pelodiscus_sinensis
ENSLOCG00000004808	TRANK1	65	58.120	ENSPCAG00000002172	-	86	58.020	Procavia_capensis
ENSLOCG00000004808	TRANK1	81	46.405	ENSPVAG00000004199	TRANK1	99	46.295	Pteropus_vampyrus
ENSLOCG00000004808	TRANK1	100	47.243	ENSRBIG00000012281	TRANK1	99	47.472	Rhinopithecus_bieti
ENSLOCG00000004808	TRANK1	99	47.454	ENSRROG00000044487	TRANK1	99	47.438	Rhinopithecus_roxellana
ENSLOCG00000004808	TRANK1	58	58.230	ENSSARG00000007861	-	72	58.230	Sorex_araneus
ENSLOCG00000004808	TRANK1	74	52.742	ENSSPUG00000015974	TRANK1	92	65.891	Sphenodon_punctatus
ENSLOCG00000004808	TRANK1	83	47.913	ENSTGUG00000005694	TRANK1	100	47.912	Taeniopygia_guttata
ENSLOCG00000004808	TRANK1	55	51.658	ENSUAMG00000027609	-	99	51.778	Ursus_americanus
ENSLOCG00000004808	TRANK1	55	52.015	ENSUMAG00000006416	TRANK1	99	52.137	Ursus_maritimus
ENSLOCG00000004808	TRANK1	55	50.875	ENSVVUG00000007788	TRANK1	99	51.055	Vulpes_vulpes