EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000004814 (Gene tree)
Gene ID: 102696785
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 10328 bases
Position: chrLG13:9473705-9484032
Accession: 102696785
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005782	zf-CCCH	PF00642.24	2.4e-21	1	2
ENSLOCP00000005782	zf-CCCH	PF00642.24	2.4e-21	2	2
ENSLOCP00000005782	zf-CCHC	PF00098.23	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005790	-	5665	XM_006637124	ENSLOCP00000005782	269 (aa)	XP_006637187	W5MBM3

Gene Model

Click here to download ENSLOCG00000004814's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004814's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004814	cpsf4	100	89.219	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSLOCG00000004814	cpsf4	67	71.271	ENSAPOG00000004921	cpsf4	100	69.780	Acanthochromis_polyacanthus
ENSLOCG00000004814	cpsf4	100	89.591	ENSAMEG00000006252	CPSF4	100	89.591	Ailuropoda_melanoleuca
ENSLOCG00000004814	cpsf4	100	79.182	ENSACIG00000009248	cpsf4	100	75.836	Amphilophus_citrinellus
ENSLOCG00000004814	cpsf4	100	84.015	ENSAOCG00000019616	cpsf4	100	82.963	Amphiprion_ocellaris
ENSLOCG00000004814	cpsf4	100	84.015	ENSAPEG00000011679	cpsf4	100	82.963	Amphiprion_percula
ENSLOCG00000004814	cpsf4	100	82.900	ENSATEG00000007010	cpsf4	100	81.852	Anabas_testudineus
ENSLOCG00000004814	cpsf4	100	88.104	ENSACAG00000012941	CPSF4	89	88.104	Anolis_carolinensis
ENSLOCG00000004814	cpsf4	100	89.219	ENSANAG00000021360	CPSF4	100	89.219	Aotus_nancymaae
ENSLOCG00000004814	cpsf4	100	82.156	ENSACLG00000010374	cpsf4	100	80.741	Astatotilapia_calliptera
ENSLOCG00000004814	cpsf4	100	87.037	ENSAMXG00000031647	cpsf4	100	87.037	Astyanax_mexicanus
ENSLOCG00000004814	cpsf4	100	80.297	ENSBTAG00000002090	CPSF4	100	80.669	Bos_taurus
ENSLOCG00000004814	cpsf4	100	89.219	ENSCJAG00000015826	CPSF4	100	89.219	Callithrix_jacchus
ENSLOCG00000004814	cpsf4	100	89.591	ENSCAFG00000015036	CPSF4	100	89.591	Canis_familiaris
ENSLOCG00000004814	cpsf4	100	84.015	ENSCAFG00020014462	CPSF4	100	84.015	Canis_lupus_dingo
ENSLOCG00000004814	cpsf4	100	88.848	ENSCHIG00000014313	CPSF4	100	88.848	Capra_hircus
ENSLOCG00000004814	cpsf4	100	84.387	ENSTSYG00000005712	-	100	81.784	Carlito_syrichta
ENSLOCG00000004814	cpsf4	100	77.407	ENSTSYG00000014604	-	100	74.815	Carlito_syrichta
ENSLOCG00000004814	cpsf4	89	77.593	ENSTSYG00000008195	-	99	74.800	Carlito_syrichta
ENSLOCG00000004814	cpsf4	82	88.182	ENSCAPG00000013881	CPSF4	88	87.387	Cavia_aperea
ENSLOCG00000004814	cpsf4	100	84.387	ENSCPOG00000001783	CPSF4	100	81.784	Cavia_porcellus
ENSLOCG00000004814	cpsf4	100	89.219	ENSCCAG00000028291	CPSF4	100	89.219	Cebus_capucinus
ENSLOCG00000004814	cpsf4	100	89.219	ENSCATG00000038440	CPSF4	100	89.219	Cercocebus_atys
ENSLOCG00000004814	cpsf4	100	89.591	ENSCLAG00000007050	CPSF4	100	89.591	Chinchilla_lanigera
ENSLOCG00000004814	cpsf4	100	89.219	ENSCSAG00000017795	CPSF4	100	89.219	Chlorocebus_sabaeus
ENSLOCG00000004814	cpsf4	80	88.889	ENSCPBG00000020869	CPSF4	100	88.889	Chrysemys_picta_bellii
ENSLOCG00000004814	cpsf4	61	80.606	ENSCPBG00000010269	-	100	80.120	Chrysemys_picta_bellii
ENSLOCG00000004814	cpsf4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSLOCG00000004814	cpsf4	96	53.025	ENSCSAVG00000011469	-	97	53.381	Ciona_savignyi
ENSLOCG00000004814	cpsf4	100	89.219	ENSCANG00000019384	CPSF4	100	89.219	Colobus_angolensis_palliatus
ENSLOCG00000004814	cpsf4	100	84.387	ENSCGRG00001024184	Cpsf4	100	81.784	Cricetulus_griseus_chok1gshd
ENSLOCG00000004814	cpsf4	100	89.591	ENSCGRG00000013892	Cpsf4	100	89.591	Cricetulus_griseus_crigri
ENSLOCG00000004814	cpsf4	100	82.156	ENSCSEG00000019055	cpsf4	100	80.741	Cynoglossus_semilaevis
ENSLOCG00000004814	cpsf4	100	83.643	ENSCVAG00000016528	cpsf4	100	83.643	Cyprinodon_variegatus
ENSLOCG00000004814	cpsf4	100	85.609	ENSDARG00000020217	cpsf4	100	84.502	Danio_rerio
ENSLOCG00000004814	cpsf4	100	89.219	ENSDNOG00000006344	CPSF4	100	89.219	Dasypus_novemcinctus
ENSLOCG00000004814	cpsf4	81	88.479	ENSDORG00000000742	Cpsf4	100	88.479	Dipodomys_ordii
ENSLOCG00000004814	cpsf4	100	52.508	FBgn0015621	Clp	99	52.560	Drosophila_melanogaster
ENSLOCG00000004814	cpsf4	70	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSLOCG00000004814	cpsf4	99	64.794	ENSEBUG00000012552	cpsf4	98	64.794	Eptatretus_burgeri
ENSLOCG00000004814	cpsf4	100	84.387	ENSEASG00005002487	CPSF4	100	81.784	Equus_asinus_asinus
ENSLOCG00000004814	cpsf4	100	89.591	ENSECAG00000007525	CPSF4	100	89.591	Equus_caballus
ENSLOCG00000004814	cpsf4	63	98.507	ENSEEUG00000002158	CPSF4	73	98.507	Erinaceus_europaeus
ENSLOCG00000004814	cpsf4	100	83.883	ENSELUG00000011481	cpsf4	100	83.883	Esox_lucius
ENSLOCG00000004814	cpsf4	100	89.591	ENSFCAG00000015070	CPSF4	100	89.591	Felis_catus
ENSLOCG00000004814	cpsf4	61	56.395	ENSFALG00000012906	-	100	56.395	Ficedula_albicollis
ENSLOCG00000004814	cpsf4	100	84.387	ENSFALG00000013799	CPSF4	100	81.784	Ficedula_albicollis
ENSLOCG00000004814	cpsf4	90	88.477	ENSFDAG00000014092	CPSF4	100	88.477	Fukomys_damarensis
ENSLOCG00000004814	cpsf4	100	82.900	ENSFHEG00000010880	cpsf4	100	82.900	Fundulus_heteroclitus
ENSLOCG00000004814	cpsf4	100	79.705	ENSGMOG00000002330	cpsf4	100	77.860	Gadus_morhua
ENSLOCG00000004814	cpsf4	100	85.130	ENSGALG00000004714	CPSF4	100	81.784	Gallus_gallus
ENSLOCG00000004814	cpsf4	99	37.113	ENSGALG00000004441	-	98	36.316	Gallus_gallus
ENSLOCG00000004814	cpsf4	100	82.900	ENSGAFG00000010580	cpsf4	100	82.900	Gambusia_affinis
ENSLOCG00000004814	cpsf4	100	77.941	ENSGACG00000007792	cpsf4	100	75.368	Gasterosteus_aculeatus
ENSLOCG00000004814	cpsf4	68	76.923	ENSGAGG00000020579	-	92	80.606	Gopherus_agassizii
ENSLOCG00000004814	cpsf4	100	89.963	ENSGAGG00000021835	CPSF4	100	89.963	Gopherus_agassizii
ENSLOCG00000004814	cpsf4	100	89.219	ENSGGOG00000015131	CPSF4	100	89.219	Gorilla_gorilla
ENSLOCG00000004814	cpsf4	100	82.156	ENSHBUG00000013699	cpsf4	100	80.741	Haplochromis_burtoni
ENSLOCG00000004814	cpsf4	100	88.192	ENSHGLG00000017150	CPSF4	100	88.192	Heterocephalus_glaber_female
ENSLOCG00000004814	cpsf4	66	66.102	ENSHGLG00100017302	-	81	66.102	Heterocephalus_glaber_male
ENSLOCG00000004814	cpsf4	87	85.593	ENSHGLG00100009215	-	100	85.593	Heterocephalus_glaber_male
ENSLOCG00000004814	cpsf4	100	80.669	ENSHCOG00000004397	cpsf4	100	80.669	Hippocampus_comes
ENSLOCG00000004814	cpsf4	100	85.609	ENSIPUG00000017147	cpsf4	100	85.609	Ictalurus_punctatus
ENSLOCG00000004814	cpsf4	100	89.591	ENSSTOG00000001688	CPSF4	100	89.591	Ictidomys_tridecemlineatus
ENSLOCG00000004814	cpsf4	100	89.591	ENSJJAG00000019426	Cpsf4	100	89.591	Jaculus_jaculus
ENSLOCG00000004814	cpsf4	100	80.669	ENSKMAG00000015642	cpsf4	100	80.669	Kryptolebias_marmoratus
ENSLOCG00000004814	cpsf4	100	87.778	ENSLACG00000010938	CPSF4	100	87.778	Latimeria_chalumnae
ENSLOCG00000004814	cpsf4	100	59.630	ENSLACG00000018470	-	100	60.370	Latimeria_chalumnae
ENSLOCG00000004814	cpsf4	100	89.219	ENSLAFG00000000159	CPSF4	100	89.219	Loxodonta_africana
ENSLOCG00000004814	cpsf4	100	89.219	ENSMFAG00000001462	CPSF4	100	89.219	Macaca_fascicularis
ENSLOCG00000004814	cpsf4	100	89.219	ENSMMUG00000019191	CPSF4	100	89.219	Macaca_mulatta
ENSLOCG00000004814	cpsf4	100	89.219	ENSMNEG00000032306	CPSF4	100	89.219	Macaca_nemestrina
ENSLOCG00000004814	cpsf4	100	89.219	ENSMLEG00000034721	CPSF4	100	89.219	Mandrillus_leucophaeus
ENSLOCG00000004814	cpsf4	100	83.643	ENSMAMG00000006244	cpsf4	100	83.271	Mastacembelus_armatus
ENSLOCG00000004814	cpsf4	100	82.156	ENSMZEG00005007515	cpsf4	100	80.741	Maylandia_zebra
ENSLOCG00000004814	cpsf4	87	83.404	ENSMGAG00000004235	CPSF4	100	79.574	Meleagris_gallopavo
ENSLOCG00000004814	cpsf4	100	89.591	ENSMAUG00000021253	Cpsf4	100	89.591	Mesocricetus_auratus
ENSLOCG00000004814	cpsf4	100	89.219	ENSMICG00000017429	CPSF4	100	89.219	Microcebus_murinus
ENSLOCG00000004814	cpsf4	100	89.591	ENSMOCG00000014901	Cpsf4	100	89.591	Microtus_ochrogaster
ENSLOCG00000004814	cpsf4	100	82.900	ENSMMOG00000001813	cpsf4	100	82.900	Mola_mola
ENSLOCG00000004814	cpsf4	100	90.706	ENSMODG00000001367	CPSF4	100	90.706	Monodelphis_domestica
ENSLOCG00000004814	cpsf4	100	83.271	ENSMALG00000012611	cpsf4	100	82.222	Monopterus_albus
ENSLOCG00000004814	cpsf4	100	89.591	MGP_CAROLIEiJ_G0028012	Cpsf4	100	89.591	Mus_caroli
ENSLOCG00000004814	cpsf4	100	89.591	ENSMUSG00000029625	Cpsf4	100	89.591	Mus_musculus
ENSLOCG00000004814	cpsf4	100	89.591	MGP_PahariEiJ_G0024581	Cpsf4	100	89.591	Mus_pahari
ENSLOCG00000004814	cpsf4	100	89.591	MGP_SPRETEiJ_G0029013	Cpsf4	100	89.591	Mus_spretus
ENSLOCG00000004814	cpsf4	100	89.591	ENSMPUG00000016508	CPSF4	100	89.591	Mustela_putorius_furo
ENSLOCG00000004814	cpsf4	87	82.128	ENSMLUG00000010980	CPSF4	100	80.000	Myotis_lucifugus
ENSLOCG00000004814	cpsf4	100	89.963	ENSNGAG00000001567	Cpsf4	100	89.963	Nannospalax_galili
ENSLOCG00000004814	cpsf4	91	81.224	ENSNBRG00000003943	cpsf4	98	79.675	Neolamprologus_brichardi
ENSLOCG00000004814	cpsf4	100	86.617	ENSNLEG00000011074	CPSF4	100	86.617	Nomascus_leucogenys
ENSLOCG00000004814	cpsf4	100	90.706	ENSMEUG00000006955	CPSF4	100	90.706	Notamacropus_eugenii
ENSLOCG00000004814	cpsf4	100	89.219	ENSOPRG00000013663	CPSF4	100	89.219	Ochotona_princeps
ENSLOCG00000004814	cpsf4	100	89.591	ENSODEG00000011181	-	100	89.591	Octodon_degus
ENSLOCG00000004814	cpsf4	99	71.698	ENSODEG00000018283	-	91	69.057	Octodon_degus
ENSLOCG00000004814	cpsf4	100	68.864	ENSODEG00000009779	-	100	68.864	Octodon_degus
ENSLOCG00000004814	cpsf4	100	82.156	ENSONIG00000008495	cpsf4	100	80.741	Oreochromis_niloticus
ENSLOCG00000004814	cpsf4	87	88.511	ENSOANG00000007729	CPSF4	100	88.511	Ornithorhynchus_anatinus
ENSLOCG00000004814	cpsf4	100	54.804	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSLOCG00000004814	cpsf4	100	89.219	ENSOCUG00000002437	CPSF4	70	89.219	Oryctolagus_cuniculus
ENSLOCG00000004814	cpsf4	100	82.900	ENSORLG00000022798	cpsf4	100	82.900	Oryzias_latipes
ENSLOCG00000004814	cpsf4	100	82.900	ENSORLG00020008548	cpsf4	100	82.900	Oryzias_latipes_hni
ENSLOCG00000004814	cpsf4	100	82.528	ENSORLG00015019575	cpsf4	100	82.528	Oryzias_latipes_hsok
ENSLOCG00000004814	cpsf4	100	81.413	ENSOMEG00000005176	cpsf4	100	81.413	Oryzias_melastigma
ENSLOCG00000004814	cpsf4	100	89.591	ENSOGAG00000010884	CPSF4	100	89.591	Otolemur_garnettii
ENSLOCG00000004814	cpsf4	100	78.755	ENSOARG00000018668	CPSF4	100	78.755	Ovis_aries
ENSLOCG00000004814	cpsf4	100	89.219	ENSPPAG00000043355	CPSF4	100	89.219	Pan_paniscus
ENSLOCG00000004814	cpsf4	100	89.591	ENSPPRG00000003134	CPSF4	100	89.591	Panthera_pardus
ENSLOCG00000004814	cpsf4	90	89.256	ENSPTIG00000005604	CPSF4	90	89.256	Panthera_tigris_altaica
ENSLOCG00000004814	cpsf4	100	89.219	ENSPTRG00000019453	CPSF4	100	89.219	Pan_troglodytes
ENSLOCG00000004814	cpsf4	100	89.219	ENSPANG00000023123	CPSF4	100	89.219	Papio_anubis
ENSLOCG00000004814	cpsf4	100	87.956	ENSPKIG00000014278	cpsf4	100	87.956	Paramormyrops_kingsleyae
ENSLOCG00000004814	cpsf4	80	88.426	ENSPSIG00000011229	CPSF4	100	88.426	Pelodiscus_sinensis
ENSLOCG00000004814	cpsf4	81	56.621	ENSPSIG00000018198	-	100	56.054	Pelodiscus_sinensis
ENSLOCG00000004814	cpsf4	100	73.606	ENSPMGG00000017735	cpsf4	100	72.862	Periophthalmus_magnuspinnatus
ENSLOCG00000004814	cpsf4	100	89.591	ENSPEMG00000004508	Cpsf4	100	89.591	Peromyscus_maniculatus_bairdii
ENSLOCG00000004814	cpsf4	100	90.706	ENSPCIG00000024776	CPSF4	100	90.706	Phascolarctos_cinereus
ENSLOCG00000004814	cpsf4	100	82.900	ENSPFOG00000014912	cpsf4	100	82.900	Poecilia_formosa
ENSLOCG00000004814	cpsf4	100	75.836	ENSPLAG00000009599	cpsf4	100	75.836	Poecilia_latipinna
ENSLOCG00000004814	cpsf4	100	82.900	ENSPMEG00000009790	cpsf4	100	82.900	Poecilia_mexicana
ENSLOCG00000004814	cpsf4	100	82.156	ENSPREG00000018166	cpsf4	100	79.554	Poecilia_reticulata
ENSLOCG00000004814	cpsf4	87	88.034	ENSPPYG00000017378	CPSF4	100	88.034	Pongo_abelii
ENSLOCG00000004814	cpsf4	100	88.848	ENSPCAG00000001892	CPSF4	100	88.848	Procavia_capensis
ENSLOCG00000004814	cpsf4	100	89.219	ENSPCOG00000012771	CPSF4	100	89.219	Propithecus_coquereli
ENSLOCG00000004814	cpsf4	100	83.271	ENSPVAG00000007531	CPSF4	100	83.271	Pteropus_vampyrus
ENSLOCG00000004814	cpsf4	100	82.156	ENSPNYG00000018559	cpsf4	100	80.741	Pundamilia_nyererei
ENSLOCG00000004814	cpsf4	100	87.778	ENSPNAG00000003736	cpsf4	100	87.778	Pygocentrus_nattereri
ENSLOCG00000004814	cpsf4	100	81.041	ENSRNOG00000000985	Cpsf4	100	81.413	Rattus_norvegicus
ENSLOCG00000004814	cpsf4	87	88.462	ENSRBIG00000033886	CPSF4	100	88.462	Rhinopithecus_bieti
ENSLOCG00000004814	cpsf4	100	84.015	ENSRROG00000040431	CPSF4	100	81.413	Rhinopithecus_roxellana
ENSLOCG00000004814	cpsf4	100	89.219	ENSSBOG00000020493	CPSF4	100	89.219	Saimiri_boliviensis_boliviensis
ENSLOCG00000004814	cpsf4	100	90.706	ENSSHAG00000011533	CPSF4	100	90.706	Sarcophilus_harrisii
ENSLOCG00000004814	cpsf4	100	87.319	ENSSFOG00015007883	cpsf4	100	88.043	Scleropages_formosus
ENSLOCG00000004814	cpsf4	100	78.810	ENSSMAG00000006374	cpsf4	100	76.580	Scophthalmus_maximus
ENSLOCG00000004814	cpsf4	100	84.015	ENSSDUG00000018887	cpsf4	100	82.963	Seriola_dumerili
ENSLOCG00000004814	cpsf4	100	84.015	ENSSLDG00000019078	cpsf4	100	82.963	Seriola_lalandi_dorsalis
ENSLOCG00000004814	cpsf4	87	88.889	ENSSARG00000012416	CPSF4	100	88.889	Sorex_araneus
ENSLOCG00000004814	cpsf4	100	89.591	ENSSPUG00000003549	CPSF4	100	89.591	Sphenodon_punctatus
ENSLOCG00000004814	cpsf4	96	56.977	ENSSPUG00000014803	-	97	56.977	Sphenodon_punctatus
ENSLOCG00000004814	cpsf4	100	80.297	ENSSPAG00000006174	cpsf4	100	76.952	Stegastes_partitus
ENSLOCG00000004814	cpsf4	100	84.387	ENSSSCG00000026896	CPSF4	100	81.784	Sus_scrofa
ENSLOCG00000004814	cpsf4	100	83.395	ENSTGUG00000007552	CPSF4	100	80.812	Taeniopygia_guttata
ENSLOCG00000004814	cpsf4	100	80.669	ENSTRUG00000024220	cpsf4	100	80.669	Takifugu_rubripes
ENSLOCG00000004814	cpsf4	100	80.669	ENSTNIG00000006265	cpsf4	100	80.669	Tetraodon_nigroviridis
ENSLOCG00000004814	cpsf4	87	79.915	ENSTBEG00000011406	CPSF4	100	79.915	Tupaia_belangeri
ENSLOCG00000004814	cpsf4	100	74.349	ENSTTRG00000003007	CPSF4	100	74.349	Tursiops_truncatus
ENSLOCG00000004814	cpsf4	92	79.352	ENSUAMG00000008051	CPSF4	85	79.757	Ursus_americanus
ENSLOCG00000004814	cpsf4	100	81.041	ENSUMAG00000009474	CPSF4	100	81.413	Ursus_maritimus
ENSLOCG00000004814	cpsf4	100	81.784	ENSVVUG00000008824	CPSF4	100	81.784	Vulpes_vulpes
ENSLOCG00000004814	cpsf4	100	85.663	ENSXETG00000009892	cpsf4	100	85.663	Xenopus_tropicalis
ENSLOCG00000004814	cpsf4	99	60.370	ENSXETG00000004641	cpsf4l	99	60.448	Xenopus_tropicalis
ENSLOCG00000004814	cpsf4	100	82.528	ENSXCOG00000016040	cpsf4	100	82.528	Xiphophorus_couchianus
ENSLOCG00000004814	cpsf4	100	82.900	ENSXMAG00000024670	cpsf4	100	82.900	Xiphophorus_maculatus