EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000004827 (Gene tree)
Gene ID: 102698106
Gene Symbol: prpf6
Alias: c20orf14|fc12b02|wu:fa05f07|wu:fc12b02|zgc:65913
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 24254 bases
Position: chrLG18:9966026-9990279
Accession: 102698106
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005822	PRP1_N	PF06424.12	1.1e-57	1	1
ENSLOCP00000005808	PRP1_N	PF06424.12	1.2e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005830	-	4592	-	ENSLOCP00000005822	967 (aa)	-	W5MBR3
ENSLOCT00000005816	-	4631	XM_006639588	ENSLOCP00000005808	995 (aa)	XP_006639651	W5MBP9

Gene Model

Click here to download ENSLOCG00000004827's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004827's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004827	prpf6	96	92.986	ENSG00000101161	PRPF6	100	93.943	Homo_sapiens
ENSLOCG00000004827	prpf6	96	92.553	ENSAPOG00000010395	prpf6	96	94.362	Acanthochromis_polyacanthus
ENSLOCG00000004827	prpf6	95	93.869	ENSAMEG00000001916	PRPF6	99	93.446	Ailuropoda_melanoleuca
ENSLOCG00000004827	prpf6	96	92.447	ENSACIG00000019862	prpf6	98	92.812	Amphilophus_citrinellus
ENSLOCG00000004827	prpf6	96	92.660	ENSAOCG00000012988	prpf6	96	94.468	Amphiprion_ocellaris
ENSLOCG00000004827	prpf6	96	85.638	ENSAPEG00000008301	prpf6	100	87.872	Amphiprion_percula
ENSLOCG00000004827	prpf6	96	92.660	ENSATEG00000005581	prpf6	96	94.468	Anabas_testudineus
ENSLOCG00000004827	prpf6	97	93.354	ENSACAG00000006464	PRPF6	96	93.914	Anolis_carolinensis
ENSLOCG00000004827	prpf6	96	93.993	ENSANAG00000012661	PRPF6	100	95.053	Aotus_nancymaae
ENSLOCG00000004827	prpf6	96	92.340	ENSACLG00000025875	prpf6	98	92.708	Astatotilapia_calliptera
ENSLOCG00000004827	prpf6	97	93.038	ENSAMXG00000001929	prpf6	97	94.831	Astyanax_mexicanus
ENSLOCG00000004827	prpf6	96	93.624	ENSBTAG00000011656	PRPF6	100	94.580	Bos_taurus
ENSLOCG00000004827	prpf6	96	92.986	ENSCJAG00000010616	PRPF6	100	93.943	Callithrix_jacchus
ENSLOCG00000004827	prpf6	96	93.730	ENSCAFG00000013165	PRPF6	100	94.687	Canis_familiaris
ENSLOCG00000004827	prpf6	96	93.730	ENSCAFG00020002050	PRPF6	100	94.687	Canis_lupus_dingo
ENSLOCG00000004827	prpf6	96	93.624	ENSCHIG00000018187	PRPF6	100	94.580	Capra_hircus
ENSLOCG00000004827	prpf6	96	93.411	ENSTSYG00000007814	PRPF6	100	94.368	Carlito_syrichta
ENSLOCG00000004827	prpf6	92	93.893	ENSCAPG00000015077	PRPF6	100	93.021	Cavia_aperea
ENSLOCG00000004827	prpf6	96	93.836	ENSCPOG00000007518	PRPF6	100	94.793	Cavia_porcellus
ENSLOCG00000004827	prpf6	96	89.904	ENSCCAG00000024564	PRPF6	100	90.861	Cebus_capucinus
ENSLOCG00000004827	prpf6	96	92.986	ENSCATG00000037473	PRPF6	100	93.943	Cercocebus_atys
ENSLOCG00000004827	prpf6	96	90.223	ENSCLAG00000003854	PRPF6	100	91.180	Chinchilla_lanigera
ENSLOCG00000004827	prpf6	96	87.962	ENSCSAG00000016742	PRPF6	100	88.912	Chlorocebus_sabaeus
ENSLOCG00000004827	prpf6	80	79.187	ENSCHOG00000003315	-	98	78.843	Choloepus_hoffmanni
ENSLOCG00000004827	prpf6	97	94.381	ENSCPBG00000013964	PRPF6	97	94.953	Chrysemys_picta_bellii
ENSLOCG00000004827	prpf6	95	72.803	ENSCING00000008817	-	99	72.803	Ciona_intestinalis
ENSLOCG00000004827	prpf6	96	92.880	ENSCANG00000038230	PRPF6	100	93.836	Colobus_angolensis_palliatus
ENSLOCG00000004827	prpf6	96	93.836	ENSCGRG00001022666	Prpf6	100	94.793	Cricetulus_griseus_chok1gshd
ENSLOCG00000004827	prpf6	96	89.079	ENSCSEG00000018561	prpf6	100	89.507	Cynoglossus_semilaevis
ENSLOCG00000004827	prpf6	96	92.660	ENSCVAG00000010550	prpf6	96	94.468	Cyprinodon_variegatus
ENSLOCG00000004827	prpf6	100	90.000	ENSDARG00000091367	prpf6	99	94.186	Danio_rerio
ENSLOCG00000004827	prpf6	96	93.305	ENSDNOG00000040544	PRPF6	100	94.687	Dasypus_novemcinctus
ENSLOCG00000004827	prpf6	86	94.393	ENSDORG00000005406	Prpf6	100	94.393	Dipodomys_ordii
ENSLOCG00000004827	prpf6	96	70.445	FBgn0036828	CG6841	99	71.186	Drosophila_melanogaster
ENSLOCG00000004827	prpf6	81	92.544	ENSETEG00000004447	PRPF6	85	92.544	Echinops_telfairi
ENSLOCG00000004827	prpf6	96	86.532	ENSEBUG00000008835	prpf6	99	87.169	Eptatretus_burgeri
ENSLOCG00000004827	prpf6	97	93.361	ENSEASG00005023115	PRPF6	100	94.899	Equus_asinus_asinus
ENSLOCG00000004827	prpf6	94	91.073	ENSECAG00000013983	PRPF6	100	90.648	Equus_caballus
ENSLOCG00000004827	prpf6	86	95.833	ENSEEUG00000000180	PRPF6	81	95.833	Erinaceus_europaeus
ENSLOCG00000004827	prpf6	96	91.702	ENSELUG00000001945	prpf6	93	93.085	Esox_lucius
ENSLOCG00000004827	prpf6	96	93.730	ENSFCAG00000001183	PRPF6	100	94.687	Felis_catus
ENSLOCG00000004827	prpf6	95	88.055	ENSFALG00000006046	-	98	88.055	Ficedula_albicollis
ENSLOCG00000004827	prpf6	97	93.158	ENSFALG00000010326	-	98	94.526	Ficedula_albicollis
ENSLOCG00000004827	prpf6	96	92.455	ENSFDAG00000006451	PRPF6	100	94.558	Fukomys_damarensis
ENSLOCG00000004827	prpf6	96	93.191	ENSFHEG00000000560	prpf6	96	94.574	Fundulus_heteroclitus
ENSLOCG00000004827	prpf6	96	90.532	ENSGMOG00000015622	prpf6	99	91.915	Gadus_morhua
ENSLOCG00000004827	prpf6	96	93.624	ENSGALG00000006001	PRPF6	100	95.005	Gallus_gallus
ENSLOCG00000004827	prpf6	96	89.989	ENSGAFG00000021109	prpf6	96	90.420	Gambusia_affinis
ENSLOCG00000004827	prpf6	96	91.596	ENSGACG00000002576	prpf6	99	92.979	Gasterosteus_aculeatus
ENSLOCG00000004827	prpf6	98	92.917	ENSGAGG00000008653	PRPF6	97	94.848	Gopherus_agassizii
ENSLOCG00000004827	prpf6	96	92.986	ENSGGOG00000016876	PRPF6	100	93.943	Gorilla_gorilla
ENSLOCG00000004827	prpf6	96	92.340	ENSHBUG00000004496	prpf6	98	92.708	Haplochromis_burtoni
ENSLOCG00000004827	prpf6	96	93.730	ENSHGLG00000009222	PRPF6	100	94.687	Heterocephalus_glaber_female
ENSLOCG00000004827	prpf6	92	95.093	ENSHGLG00100016600	PRPF6	100	94.656	Heterocephalus_glaber_male
ENSLOCG00000004827	prpf6	96	91.277	ENSHCOG00000011513	prpf6	96	93.085	Hippocampus_comes
ENSLOCG00000004827	prpf6	99	92.754	ENSIPUG00000004912	prpf6	96	95.426	Ictalurus_punctatus
ENSLOCG00000004827	prpf6	96	90.977	ENSSTOG00000002922	PRPF6	100	91.720	Ictidomys_tridecemlineatus
ENSLOCG00000004827	prpf6	96	93.836	ENSJJAG00000000836	Prpf6	100	94.793	Jaculus_jaculus
ENSLOCG00000004827	prpf6	96	92.128	ENSKMAG00000017800	prpf6	98	92.500	Kryptolebias_marmoratus
ENSLOCG00000004827	prpf6	96	92.340	ENSLBEG00000012582	prpf6	96	93.617	Labrus_bergylta
ENSLOCG00000004827	prpf6	96	92.986	ENSLAFG00000005272	PRPF6	100	93.943	Loxodonta_africana
ENSLOCG00000004827	prpf6	96	92.880	ENSMFAG00000037542	PRPF6	100	93.836	Macaca_fascicularis
ENSLOCG00000004827	prpf6	86	96.707	ENSMMUG00000015558	PRPF6	98	96.014	Macaca_mulatta
ENSLOCG00000004827	prpf6	96	79.343	ENSMNEG00000045555	PRPF6	100	80.297	Macaca_nemestrina
ENSLOCG00000004827	prpf6	100	90.572	ENSMAMG00000010718	prpf6	96	94.374	Mastacembelus_armatus
ENSLOCG00000004827	prpf6	89	93.644	ENSMZEG00005026539	prpf6	100	94.098	Maylandia_zebra
ENSLOCG00000004827	prpf6	96	91.817	ENSMZEG00005015261	-	99	93.624	Maylandia_zebra
ENSLOCG00000004827	prpf6	92	95.202	ENSMGAG00000006634	PRPF6	100	95.202	Meleagris_gallopavo
ENSLOCG00000004827	prpf6	96	93.836	ENSMAUG00000013969	Prpf6	100	94.793	Mesocricetus_auratus
ENSLOCG00000004827	prpf6	83	94.161	ENSMICG00000017793	PRPF6	98	94.081	Microcebus_murinus
ENSLOCG00000004827	prpf6	96	93.730	ENSMOCG00000001701	Prpf6	100	94.687	Microtus_ochrogaster
ENSLOCG00000004827	prpf6	96	91.596	ENSMMOG00000020419	prpf6	100	93.404	Mola_mola
ENSLOCG00000004827	prpf6	96	93.537	ENSMODG00000017051	PRPF6	99	94.634	Monodelphis_domestica
ENSLOCG00000004827	prpf6	95	93.118	ENSMALG00000000089	prpf6	100	94.516	Monopterus_albus
ENSLOCG00000004827	prpf6	96	87.354	MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	Mus_caroli
ENSLOCG00000004827	prpf6	96	93.943	ENSMUSG00000002455	Prpf6	100	98.148	Mus_musculus
ENSLOCG00000004827	prpf6	96	93.836	MGP_PahariEiJ_G0026262	Prpf6	100	98.148	Mus_pahari
ENSLOCG00000004827	prpf6	96	93.943	MGP_SPRETEiJ_G0025741	Prpf6	100	98.148	Mus_spretus
ENSLOCG00000004827	prpf6	90	93.309	ENSMPUG00000008673	PRPF6	99	94.385	Mustela_putorius_furo
ENSLOCG00000004827	prpf6	96	93.943	ENSNGAG00000003365	Prpf6	100	94.899	Nannospalax_galili
ENSLOCG00000004827	prpf6	96	92.447	ENSNBRG00000015025	prpf6	98	92.812	Neolamprologus_brichardi
ENSLOCG00000004827	prpf6	96	92.880	ENSNLEG00000010208	PRPF6	100	93.836	Nomascus_leucogenys
ENSLOCG00000004827	prpf6	96	86.510	ENSMEUG00000009824	-	90	85.375	Notamacropus_eugenii
ENSLOCG00000004827	prpf6	96	87.885	ENSODEG00000004841	PRPF6	100	88.842	Octodon_degus
ENSLOCG00000004827	prpf6	96	92.340	ENSONIG00000017406	prpf6	98	92.708	Oreochromis_niloticus
ENSLOCG00000004827	prpf6	96	94.049	ENSOANG00000004920	PRPF6	100	95.005	Ornithorhynchus_anatinus
ENSLOCG00000004827	prpf6	94	93.348	ENSOCUG00000014151	PRPF6	100	92.918	Oryctolagus_cuniculus
ENSLOCG00000004827	prpf6	96	92.128	ENSORLG00000009592	prpf6	98	91.979	Oryzias_latipes
ENSLOCG00000004827	prpf6	96	92.234	ENSORLG00020001458	prpf6	98	92.083	Oryzias_latipes_hni
ENSLOCG00000004827	prpf6	96	92.234	ENSORLG00015018762	prpf6	98	92.083	Oryzias_latipes_hsok
ENSLOCG00000004827	prpf6	96	92.021	ENSOMEG00000012174	prpf6	96	93.830	Oryzias_melastigma
ENSLOCG00000004827	prpf6	96	86.306	ENSOGAG00000007573	PRPF6	100	87.261	Otolemur_garnettii
ENSLOCG00000004827	prpf6	95	94.392	ENSOARG00000008776	PRPF6	99	93.968	Ovis_aries
ENSLOCG00000004827	prpf6	96	92.986	ENSPPAG00000008686	PRPF6	100	93.943	Pan_paniscus
ENSLOCG00000004827	prpf6	96	93.730	ENSPPRG00000008497	PRPF6	100	94.687	Panthera_pardus
ENSLOCG00000004827	prpf6	92	95.093	ENSPTIG00000011184	PRPF6	97	94.656	Panthera_tigris_altaica
ENSLOCG00000004827	prpf6	96	92.986	ENSPTRG00000013765	PRPF6	100	93.943	Pan_troglodytes
ENSLOCG00000004827	prpf6	96	92.561	ENSPANG00000024135	PRPF6	100	93.518	Papio_anubis
ENSLOCG00000004827	prpf6	100	93.367	ENSPKIG00000005627	prpf6	100	96.013	Paramormyrops_kingsleyae
ENSLOCG00000004827	prpf6	89	95.238	ENSPSIG00000007717	PRPF6	100	94.785	Pelodiscus_sinensis
ENSLOCG00000004827	prpf6	100	87.882	ENSPMGG00000008925	prpf6	96	92.136	Periophthalmus_magnuspinnatus
ENSLOCG00000004827	prpf6	96	93.836	ENSPEMG00000016036	Prpf6	100	94.793	Peromyscus_maniculatus_bairdii
ENSLOCG00000004827	prpf6	97	86.120	ENSPMAG00000006144	prpf6	99	87.342	Petromyzon_marinus
ENSLOCG00000004827	prpf6	96	94.155	ENSPCIG00000017909	PRPF6	100	95.112	Phascolarctos_cinereus
ENSLOCG00000004827	prpf6	96	92.766	ENSPFOG00000006431	prpf6	96	94.574	Poecilia_formosa
ENSLOCG00000004827	prpf6	96	92.447	ENSPLAG00000005974	prpf6	96	94.255	Poecilia_latipinna
ENSLOCG00000004827	prpf6	96	92.660	ENSPMEG00000009977	prpf6	96	94.468	Poecilia_mexicana
ENSLOCG00000004827	prpf6	96	92.766	ENSPREG00000017993	prpf6	94	93.028	Poecilia_reticulata
ENSLOCG00000004827	prpf6	96	92.455	ENSPPYG00000011256	PRPF6	100	93.411	Pongo_abelii
ENSLOCG00000004827	prpf6	90	97.386	ENSPCAG00000006536	PRPF6	88	97.386	Procavia_capensis
ENSLOCG00000004827	prpf6	96	93.092	ENSPCOG00000016881	PRPF6	100	94.049	Propithecus_coquereli
ENSLOCG00000004827	prpf6	96	87.460	ENSPVAG00000014316	PRPF6	100	88.417	Pteropus_vampyrus
ENSLOCG00000004827	prpf6	96	77.802	ENSPNYG00000001939	prpf6	98	81.943	Pundamilia_nyererei
ENSLOCG00000004827	prpf6	95	95.032	ENSPNAG00000015606	prpf6	98	94.578	Pygocentrus_nattereri
ENSLOCG00000004827	prpf6	96	93.730	ENSRNOG00000051498	Prpf6	100	94.687	Rattus_norvegicus
ENSLOCG00000004827	prpf6	96	92.880	ENSRBIG00000043613	PRPF6	100	93.836	Rhinopithecus_bieti
ENSLOCG00000004827	prpf6	96	89.841	ENSRROG00000040969	PRPF6	98	95.329	Rhinopithecus_roxellana
ENSLOCG00000004827	prpf6	86	92.035	ENSSBOG00000020632	PRPF6	93	89.792	Saimiri_boliviensis_boliviensis
ENSLOCG00000004827	prpf6	96	94.155	ENSSHAG00000016810	PRPF6	100	95.112	Sarcophilus_harrisii
ENSLOCG00000004827	prpf6	95	95.806	ENSSFOG00015020859	prpf6	100	97.204	Scleropages_formosus
ENSLOCG00000004827	prpf6	96	92.447	ENSSMAG00000008112	prpf6	96	93.830	Scophthalmus_maximus
ENSLOCG00000004827	prpf6	96	92.553	ENSSDUG00000016142	prpf6	98	92.917	Seriola_dumerili
ENSLOCG00000004827	prpf6	96	92.553	ENSSLDG00000025283	prpf6	100	90.957	Seriola_lalandi_dorsalis
ENSLOCG00000004827	prpf6	89	93.537	ENSSPUG00000018260	PRPF6	100	93.084	Sphenodon_punctatus
ENSLOCG00000004827	prpf6	96	92.340	ENSSPAG00000015850	prpf6	96	94.149	Stegastes_partitus
ENSLOCG00000004827	prpf6	95	94.497	ENSSSCG00000029119	PRPF6	100	94.104	Sus_scrofa
ENSLOCG00000004827	prpf6	95	95.127	ENSTGUG00000007221	PRPF6	100	95.127	Taeniopygia_guttata
ENSLOCG00000004827	prpf6	96	91.277	ENSTRUG00000002920	prpf6	98	91.476	Takifugu_rubripes
ENSLOCG00000004827	prpf6	96	86.561	ENSTNIG00000017873	prpf6	100	86.984	Tetraodon_nigroviridis
ENSLOCG00000004827	prpf6	85	98.333	ENSTBEG00000005348	PRPF6	85	96.111	Tupaia_belangeri
ENSLOCG00000004827	prpf6	96	93.411	ENSTTRG00000013068	PRPF6	100	94.368	Tursiops_truncatus
ENSLOCG00000004827	prpf6	93	93.275	ENSUMAG00000021631	PRPF6	98	93.152	Ursus_maritimus
ENSLOCG00000004827	prpf6	96	93.730	ENSVVUG00000014948	PRPF6	100	94.687	Vulpes_vulpes
ENSLOCG00000004827	prpf6	97	92.211	ENSXETG00000012054	prpf6	98	93.579	Xenopus_tropicalis
ENSLOCG00000004827	prpf6	96	92.660	ENSXCOG00000008082	prpf6	96	94.468	Xiphophorus_couchianus
ENSLOCG00000004827	prpf6	96	92.660	ENSXMAG00000015581	prpf6	96	94.468	Xiphophorus_maculatus