EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000004828 (Gene tree)
Gene ID: 102697319
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 11588 bases
Position: chrLG14:8538951-8550538
Accession: 102697319
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005800	RRM_1	PF00076.22	1.1e-54	1	4
ENSLOCP00000005800	RRM_1	PF00076.22	1.1e-54	2	4
ENSLOCP00000005800	RRM_1	PF00076.22	1.1e-54	3	4
ENSLOCP00000005800	RRM_1	PF00076.22	1.1e-54	4	4
ENSLOCP00000005817	RRM_1	PF00076.22	1.2e-54	1	4
ENSLOCP00000005817	RRM_1	PF00076.22	1.2e-54	2	4
ENSLOCP00000005817	RRM_1	PF00076.22	1.2e-54	3	4
ENSLOCP00000005817	RRM_1	PF00076.22	1.2e-54	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005825	-	2520	-	ENSLOCP00000005817	747 (aa)	-	W5MBQ8
ENSLOCT00000005808	-	4741	XM_006637640	ENSLOCP00000005800	734 (aa)	XP_006637703	W5MBP1

Gene Model

Click here to download ENSLOCG00000004828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004828's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004828	ncl	56	38.303	ENSAPOG00000014534	-	63	38.544	Acanthochromis_polyacanthus
ENSLOCG00000004828	ncl	51	71.925	ENSAPOG00000023888	ncl	54	72.346	Acanthochromis_polyacanthus
ENSLOCG00000004828	ncl	74	65.952	ENSACIG00000013234	ncl	60	66.106	Amphilophus_citrinellus
ENSLOCG00000004828	ncl	57	70.118	ENSAOCG00000003133	ncl	50	71.788	Amphiprion_ocellaris
ENSLOCG00000004828	ncl	78	37.629	ENSAOCG00000014792	-	59	36.800	Amphiprion_ocellaris
ENSLOCG00000004828	ncl	59	68.458	ENSAPEG00000002769	ncl	50	71.788	Amphiprion_percula
ENSLOCG00000004828	ncl	78	37.073	ENSAPEG00000013612	-	58	37.067	Amphiprion_percula
ENSLOCG00000004828	ncl	63	66.311	ENSATEG00000013343	ncl	51	70.670	Anabas_testudineus
ENSLOCG00000004828	ncl	66	38.933	ENSATEG00000019862	-	77	42.021	Anabas_testudineus
ENSLOCG00000004828	ncl	59	52.361	ENSAPLG00000012897	-	60	57.995	Anas_platyrhynchos
ENSLOCG00000004828	ncl	51	65.416	ENSAMXG00000001647	ncl	82	67.987	Astyanax_mexicanus
ENSLOCG00000004828	ncl	53	40.909	ENSCHIG00000012665	-	50	41.880	Capra_hircus
ENSLOCG00000004828	ncl	58	61.086	ENSCPBG00000016444	-	54	62.912	Chrysemys_picta_bellii
ENSLOCG00000004828	ncl	51	67.368	ENSCSEG00000015089	ncl	55	67.956	Cynoglossus_semilaevis
ENSLOCG00000004828	ncl	50	68.378	ENSCVAG00000012600	ncl	52	69.274	Cyprinodon_variegatus
ENSLOCG00000004828	ncl	57	69.104	ENSDARG00000002710	ncl	80	71.474	Danio_rerio
ENSLOCG00000004828	ncl	50	45.989	ENSDNOG00000031611	-	62	46.724	Dasypus_novemcinctus
ENSLOCG00000004828	ncl	70	63.636	ENSELUG00000006033	ncl	69	65.612	Esox_lucius
ENSLOCG00000004828	ncl	58	46.404	ENSELUG00000022826	-	77	48.753	Esox_lucius
ENSLOCG00000004828	ncl	51	57.216	ENSFALG00000007592	-	51	58.475	Ficedula_albicollis
ENSLOCG00000004828	ncl	56	64.634	ENSFHEG00000018000	ncl	72	64.354	Fundulus_heteroclitus
ENSLOCG00000004828	ncl	52	59.067	ENSGMOG00000001341	ncl	54	61.224	Gadus_morhua
ENSLOCG00000004828	ncl	51	57.772	ENSGALG00000032930	NCL	53	57.838	Gallus_gallus
ENSLOCG00000004828	ncl	74	58.814	ENSGACG00000008970	ncl	58	66.482	Gasterosteus_aculeatus
ENSLOCG00000004828	ncl	75	52.773	ENSGAGG00000013330	-	54	63.187	Gopherus_agassizii
ENSLOCG00000004828	ncl	70	64.879	ENSHBUG00000006869	ncl	66	60.554	Haplochromis_burtoni
ENSLOCG00000004828	ncl	63	64.226	ENSHCOG00000010234	ncl	66	62.368	Hippocampus_comes
ENSLOCG00000004828	ncl	57	68.160	ENSKMAG00000008111	ncl	61	66.121	Kryptolebias_marmoratus
ENSLOCG00000004828	ncl	52	40.898	ENSLBEG00000007915	-	63	41.287	Labrus_bergylta
ENSLOCG00000004828	ncl	57	67.689	ENSLBEG00000019073	ncl	53	70.112	Labrus_bergylta
ENSLOCG00000004828	ncl	79	59.353	ENSLACG00000009328	ncl	72	61.096	Latimeria_chalumnae
ENSLOCG00000004828	ncl	53	51.010	ENSLACG00000022167	-	76	52.514	Latimeria_chalumnae
ENSLOCG00000004828	ncl	53	39.756	ENSMAMG00000003479	-	67	38.830	Mastacembelus_armatus
ENSLOCG00000004828	ncl	63	65.021	ENSMAMG00000002086	ncl	56	62.687	Mastacembelus_armatus
ENSLOCG00000004828	ncl	51	64.879	ENSMZEG00005017438	ncl	66	62.208	Maylandia_zebra
ENSLOCG00000004828	ncl	50	56.736	ENSMODG00000002470	-	52	56.989	Monodelphis_domestica
ENSLOCG00000004828	ncl	74	49.912	ENSMEUG00000012335	-	51	57.183	Notamacropus_eugenii
ENSLOCG00000004828	ncl	70	64.390	ENSONIG00000012508	ncl	50	66.480	Oreochromis_niloticus
ENSLOCG00000004828	ncl	68	59.021	ENSOANG00000008732	-	63	57.816	Ornithorhynchus_anatinus
ENSLOCG00000004828	ncl	55	34.571	ENSORLG00000004645	-	80	36.170	Oryzias_latipes
ENSLOCG00000004828	ncl	59	34.437	ENSORLG00020003497	-	72	36.170	Oryzias_latipes_hni
ENSLOCG00000004828	ncl	52	36.203	ENSORLG00015006613	-	75	35.904	Oryzias_latipes_hsok
ENSLOCG00000004828	ncl	70	35.176	ENSOMEG00000015864	-	79	35.676	Oryzias_melastigma
ENSLOCG00000004828	ncl	51	69.437	ENSOMEG00000020786	ncl	63	63.753	Oryzias_melastigma
ENSLOCG00000004828	ncl	57	71.462	ENSPKIG00000002604	ncl	66	68.344	Paramormyrops_kingsleyae
ENSLOCG00000004828	ncl	58	58.705	ENSPSIG00000002361	-	50	62.155	Pelodiscus_sinensis
ENSLOCG00000004828	ncl	57	63.981	ENSPMGG00000004709	ncl	99	63.377	Periophthalmus_magnuspinnatus
ENSLOCG00000004828	ncl	63	64.362	ENSPNYG00000020494	ncl	66	60.554	Pundamilia_nyererei
ENSLOCG00000004828	ncl	57	67.294	ENSPNAG00000006192	ncl	50	69.252	Pygocentrus_nattereri
ENSLOCG00000004828	ncl	50	52.480	ENSSHAG00000002702	-	54	53.409	Sarcophilus_harrisii
ENSLOCG00000004828	ncl	51	70.899	ENSSFOG00015008583	ncl	56	71.508	Scleropages_formosus
ENSLOCG00000004828	ncl	57	67.757	ENSSMAG00000021241	ncl	51	68.144	Scophthalmus_maximus
ENSLOCG00000004828	ncl	68	36.398	ENSSMAG00000007582	-	59	41.144	Scophthalmus_maximus
ENSLOCG00000004828	ncl	73	67.024	ENSSDUG00000006128	ncl	94	67.606	Seriola_dumerili
ENSLOCG00000004828	ncl	68	39.238	ENSSDUG00000010922	-	68	42.513	Seriola_dumerili
ENSLOCG00000004828	ncl	63	68.443	ENSSLDG00000002012	ncl	66	64.831	Seriola_lalandi_dorsalis
ENSLOCG00000004828	ncl	73	37.566	ENSSLDG00000015784	-	63	42.204	Seriola_lalandi_dorsalis
ENSLOCG00000004828	ncl	51	58.987	ENSSPUG00000008244	-	57	59.626	Sphenodon_punctatus
ENSLOCG00000004828	ncl	52	40.988	ENSSPAG00000001859	-	59	40.000	Stegastes_partitus
ENSLOCG00000004828	ncl	75	56.091	ENSTGUG00000009782	-	56	58.146	Taeniopygia_guttata
ENSLOCG00000004828	ncl	57	66.981	ENSTRUG00000008185	ncl	53	67.039	Takifugu_rubripes
ENSLOCG00000004828	ncl	52	67.877	ENSTNIG00000012186	ncl	59	67.409	Tetraodon_nigroviridis
ENSLOCG00000004828	ncl	74	52.995	ENSXETG00000009517	ncl	52	62.088	Xenopus_tropicalis
ENSLOCG00000004828	ncl	53	47.910	ENSXCOG00000003524	ncl	99	51.989	Xiphophorus_couchianus
ENSLOCG00000004828	ncl	50	38.381	ENSXCOG00000007369	-	86	39.130	Xiphophorus_couchianus
ENSLOCG00000004828	ncl	68	64.158	ENSXMAG00000005914	ncl	59	65.287	Xiphophorus_maculatus