EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000004833 (Gene tree)
Gene ID: 102686891
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 6324 bases
Position: chrLG13:9484117-9490440
Accession: 102686891
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005816	PPR	PF01535.20	1.7e-11	1	1
ENSLOCP00000005803	PPR	PF01535.20	1.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005811	-	2637	XM_006637248	ENSLOCP00000005803	740 (aa)	XP_015215968	W5MBP4
ENSLOCT00000005824	-	2562	-	ENSLOCP00000005816	632 (aa)	-	W5MBQ7

Gene Model

Click here to download ENSLOCG00000004833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004833	ptcd1	93	54.849	ENSG00000106246	PTCD1	86	54.366	Homo_sapiens
ENSLOCG00000004833	ptcd1	93	54.849	ENSG00000248919	ATP5MF-PTCD1	80	54.366	Homo_sapiens
ENSLOCG00000004833	ptcd1	87	50.270	ENSAPOG00000010679	ptcd1	85	50.694	Acanthochromis_polyacanthus
ENSLOCG00000004833	ptcd1	97	53.503	ENSAMEG00000006224	-	88	51.778	Ailuropoda_melanoleuca
ENSLOCG00000004833	ptcd1	97	49.522	ENSACIG00000017861	ptcd1	88	49.615	Amphilophus_citrinellus
ENSLOCG00000004833	ptcd1	87	52.527	ENSAOCG00000022617	ptcd1	81	52.870	Amphiprion_ocellaris
ENSLOCG00000004833	ptcd1	91	53.184	ENSAOCG00000020741	-	80	53.488	Amphiprion_ocellaris
ENSLOCG00000004833	ptcd1	91	52.921	ENSAPEG00000022632	ptcd1	80	53.234	Amphiprion_percula
ENSLOCG00000004833	ptcd1	98	50.318	ENSATEG00000007016	ptcd1	85	50.998	Anabas_testudineus
ENSLOCG00000004833	ptcd1	94	56.291	ENSAPLG00000006862	-	96	56.563	Anas_platyrhynchos
ENSLOCG00000004833	ptcd1	95	55.049	ENSACAG00000012871	-	80	55.678	Anolis_carolinensis
ENSLOCG00000004833	ptcd1	93	55.316	ENSANAG00000035790	-	91	53.763	Aotus_nancymaae
ENSLOCG00000004833	ptcd1	94	51.575	ENSACLG00000002824	ptcd1	83	51.911	Astatotilapia_calliptera
ENSLOCG00000004833	ptcd1	97	52.006	ENSAMXG00000037292	ptcd1	90	52.672	Astyanax_mexicanus
ENSLOCG00000004833	ptcd1	97	53.249	ENSBTAG00000020440	-	81	53.166	Bos_taurus
ENSLOCG00000004833	ptcd1	94	55.537	ENSCJAG00000015815	-	87	55.205	Callithrix_jacchus
ENSLOCG00000004833	ptcd1	97	53.674	ENSCAFG00000015055	-	85	53.195	Canis_familiaris
ENSLOCG00000004833	ptcd1	97	53.674	ENSCAFG00020014480	-	85	53.195	Canis_lupus_dingo
ENSLOCG00000004833	ptcd1	99	53.344	ENSCHIG00000027000	-	95	52.489	Capra_hircus
ENSLOCG00000004833	ptcd1	94	54.337	ENSTSYG00000029495	-	92	53.037	Carlito_syrichta
ENSLOCG00000004833	ptcd1	95	53.226	ENSCAPG00000014660	-	98	51.786	Cavia_aperea
ENSLOCG00000004833	ptcd1	95	53.871	ENSCPOG00000001780	-	93	52.193	Cavia_porcellus
ENSLOCG00000004833	ptcd1	94	55.354	ENSCCAG00000034025	-	93	53.461	Cebus_capucinus
ENSLOCG00000004833	ptcd1	93	55.017	ENSCATG00000040859	-	86	54.705	Cercocebus_atys
ENSLOCG00000004833	ptcd1	93	54.620	ENSCLAG00000006354	-	90	52.417	Chinchilla_lanigera
ENSLOCG00000004833	ptcd1	87	54.204	ENSCSAG00000017794	-	84	53.963	Chlorocebus_sabaeus
ENSLOCG00000004833	ptcd1	94	55.751	ENSCPBG00000020866	-	84	58.544	Chrysemys_picta_bellii
ENSLOCG00000004833	ptcd1	92	30.478	ENSCING00000007717	-	98	31.746	Ciona_intestinalis
ENSLOCG00000004833	ptcd1	96	53.971	ENSCANG00000023441	-	87	54.160	Colobus_angolensis_palliatus
ENSLOCG00000004833	ptcd1	96	52.389	ENSCGRG00001023686	Ptcd1	93	51.912	Cricetulus_griseus_chok1gshd
ENSLOCG00000004833	ptcd1	97	52.050	ENSCGRG00000015031	Ptcd1	98	50.759	Cricetulus_griseus_crigri
ENSLOCG00000004833	ptcd1	92	51.500	ENSCSEG00000002378	ptcd1	81	52.181	Cynoglossus_semilaevis
ENSLOCG00000004833	ptcd1	94	51.248	ENSCVAG00000003621	ptcd1	89	52.327	Cyprinodon_variegatus
ENSLOCG00000004833	ptcd1	95	51.159	ENSCVAG00000015826	ptcd1	84	52.236	Cyprinodon_variegatus
ENSLOCG00000004833	ptcd1	93	53.554	ENSDARG00000076176	ptcd1	95	50.213	Danio_rerio
ENSLOCG00000004833	ptcd1	94	53.213	ENSDNOG00000009957	-	90	52.030	Dasypus_novemcinctus
ENSLOCG00000004833	ptcd1	97	52.389	ENSDORG00000000740	Ptcd1	96	50.994	Dipodomys_ordii
ENSLOCG00000004833	ptcd1	86	38.347	ENSEBUG00000014515	ptcd1	97	41.156	Eptatretus_burgeri
ENSLOCG00000004833	ptcd1	97	54.067	ENSEASG00005002480	-	93	53.228	Equus_asinus_asinus
ENSLOCG00000004833	ptcd1	97	54.386	ENSECAG00000016617	-	93	53.085	Equus_caballus
ENSLOCG00000004833	ptcd1	93	51.118	ENSELUG00000016517	ptcd1	83	53.110	Esox_lucius
ENSLOCG00000004833	ptcd1	97	52.951	ENSFCAG00000015069	-	88	52.951	Felis_catus
ENSLOCG00000004833	ptcd1	96	53.165	ENSFALG00000013803	-	87	55.399	Ficedula_albicollis
ENSLOCG00000004833	ptcd1	95	54.472	ENSFDAG00000006393	-	89	53.470	Fukomys_damarensis
ENSLOCG00000004833	ptcd1	85	48.995	ENSFHEG00000012491	ptcd1	92	50.000	Fundulus_heteroclitus
ENSLOCG00000004833	ptcd1	95	48.355	ENSGMOG00000007639	ptcd1	94	48.428	Gadus_morhua
ENSLOCG00000004833	ptcd1	96	53.448	ENSGALG00000004711	-	90	55.030	Gallus_gallus
ENSLOCG00000004833	ptcd1	93	50.839	ENSGAFG00000013175	ptcd1	92	46.862	Gambusia_affinis
ENSLOCG00000004833	ptcd1	91	51.783	ENSGACG00000016607	ptcd1	89	53.028	Gasterosteus_aculeatus
ENSLOCG00000004833	ptcd1	89	54.720	ENSGAGG00000021832	-	85	57.596	Gopherus_agassizii
ENSLOCG00000004833	ptcd1	93	55.017	ENSGGOG00000015123	-	86	54.705	Gorilla_gorilla
ENSLOCG00000004833	ptcd1	94	51.410	ENSHBUG00000018275	ptcd1	83	51.752	Haplochromis_burtoni
ENSLOCG00000004833	ptcd1	95	54.221	ENSHGLG00000017621	-	93	52.709	Heterocephalus_glaber_female
ENSLOCG00000004833	ptcd1	95	54.221	ENSHGLG00100007218	-	93	52.709	Heterocephalus_glaber_male
ENSLOCG00000004833	ptcd1	93	50.850	ENSHCOG00000010784	ptcd1	83	50.850	Hippocampus_comes
ENSLOCG00000004833	ptcd1	99	53.510	ENSSTOG00000001682	-	91	53.540	Ictidomys_tridecemlineatus
ENSLOCG00000004833	ptcd1	99	52.411	ENSJJAG00000000319	Ptcd1	91	52.722	Jaculus_jaculus
ENSLOCG00000004833	ptcd1	91	50.423	ENSKMAG00000008708	ptcd1	81	51.471	Kryptolebias_marmoratus
ENSLOCG00000004833	ptcd1	93	50.083	ENSLBEG00000008061	ptcd1	88	49.548	Labrus_bergylta
ENSLOCG00000004833	ptcd1	95	58.785	ENSLACG00000011172	ptcd1	98	54.781	Latimeria_chalumnae
ENSLOCG00000004833	ptcd1	97	53.503	ENSLAFG00000002588	-	93	53.170	Loxodonta_africana
ENSLOCG00000004833	ptcd1	93	55.017	ENSMFAG00000041324	-	86	54.705	Macaca_fascicularis
ENSLOCG00000004833	ptcd1	93	55.017	ENSMMUG00000030408	-	86	54.705	Macaca_mulatta
ENSLOCG00000004833	ptcd1	93	55.017	ENSMNEG00000043786	-	86	54.705	Macaca_nemestrina
ENSLOCG00000004833	ptcd1	93	40.809	ENSMLEG00000031179	-	84	42.525	Mandrillus_leucophaeus
ENSLOCG00000004833	ptcd1	97	51.438	ENSMAMG00000007623	ptcd1	85	51.468	Mastacembelus_armatus
ENSLOCG00000004833	ptcd1	94	51.575	ENSMZEG00005012722	ptcd1	83	52.070	Maylandia_zebra
ENSLOCG00000004833	ptcd1	88	56.131	ENSMGAG00000004211	-	81	55.134	Meleagris_gallopavo
ENSLOCG00000004833	ptcd1	99	51.487	ENSMICG00000017428	-	92	52.212	Microcebus_murinus
ENSLOCG00000004833	ptcd1	94	50.577	ENSMMOG00000020243	ptcd1	93	51.246	Mola_mola
ENSLOCG00000004833	ptcd1	96	53.292	ENSMODG00000001350	-	89	54.709	Monodelphis_domestica
ENSLOCG00000004833	ptcd1	92	52.470	ENSMALG00000018442	ptcd1	80	53.038	Monopterus_albus
ENSLOCG00000004833	ptcd1	93	54.333	MGP_CAROLIEiJ_G0028011	Ptcd1	85	54.443	Mus_caroli
ENSLOCG00000004833	ptcd1	93	53.589	ENSMUSG00000029624	Ptcd1	89	52.778	Mus_musculus
ENSLOCG00000004833	ptcd1	94	54.319	MGP_PahariEiJ_G0024580	Ptcd1	86	54.589	Mus_pahari
ENSLOCG00000004833	ptcd1	93	53.255	MGP_SPRETEiJ_G0029012	Ptcd1	89	52.484	Mus_spretus
ENSLOCG00000004833	ptcd1	96	53.301	ENSMPUG00000016518	-	88	52.923	Mustela_putorius_furo
ENSLOCG00000004833	ptcd1	93	55.000	ENSMLUG00000010994	-	85	52.530	Myotis_lucifugus
ENSLOCG00000004833	ptcd1	93	51.827	ENSNBRG00000010079	ptcd1	85	52.488	Neolamprologus_brichardi
ENSLOCG00000004833	ptcd1	83	56.822	ENSNLEG00000011060	-	89	57.297	Nomascus_leucogenys
ENSLOCG00000004833	ptcd1	97	54.560	ENSMEUG00000006930	-	90	54.970	Notamacropus_eugenii
ENSLOCG00000004833	ptcd1	85	53.846	ENSOPRG00000013647	-	82	52.414	Ochotona_princeps
ENSLOCG00000004833	ptcd1	94	49.588	ENSONIG00000003168	ptcd1	98	49.841	Oreochromis_niloticus
ENSLOCG00000004833	ptcd1	87	49.825	ENSOANG00000007728	-	80	48.607	Ornithorhynchus_anatinus
ENSLOCG00000004833	ptcd1	95	53.094	ENSOCUG00000010584	-	87	53.067	Oryctolagus_cuniculus
ENSLOCG00000004833	ptcd1	96	51.387	ENSORLG00000009275	ptcd1	89	50.612	Oryzias_latipes
ENSLOCG00000004833	ptcd1	96	50.485	ENSORLG00020000988	ptcd1	89	50.383	Oryzias_latipes_hni
ENSLOCG00000004833	ptcd1	96	50.000	ENSORLG00015010557	ptcd1	89	50.153	Oryzias_latipes_hsok
ENSLOCG00000004833	ptcd1	93	51.505	ENSOMEG00000020627	ptcd1	87	52.181	Oryzias_melastigma
ENSLOCG00000004833	ptcd1	99	50.621	ENSOGAG00000010877	-	93	50.735	Otolemur_garnettii
ENSLOCG00000004833	ptcd1	99	49.233	ENSOARG00000018676	-	93	49.563	Ovis_aries
ENSLOCG00000004833	ptcd1	93	54.682	ENSPPAG00000036024	-	86	54.386	Pan_paniscus
ENSLOCG00000004833	ptcd1	97	53.418	ENSPPRG00000003478	-	89	52.752	Panthera_pardus
ENSLOCG00000004833	ptcd1	93	54.682	ENSPTRG00000019452	-	86	54.386	Pan_troglodytes
ENSLOCG00000004833	ptcd1	93	54.682	ENSPANG00000016730	-	86	54.226	Papio_anubis
ENSLOCG00000004833	ptcd1	95	58.117	ENSPKIG00000014215	ptcd1	95	56.080	Paramormyrops_kingsleyae
ENSLOCG00000004833	ptcd1	93	53.488	ENSPSIG00000011184	-	99	55.627	Pelodiscus_sinensis
ENSLOCG00000004833	ptcd1	81	39.731	ENSPMAG00000009667	ptcd1	100	39.731	Petromyzon_marinus
ENSLOCG00000004833	ptcd1	96	52.188	ENSPCIG00000024778	-	90	54.106	Phascolarctos_cinereus
ENSLOCG00000004833	ptcd1	93	49.916	ENSPFOG00000004458	ptcd1	85	49.768	Poecilia_formosa
ENSLOCG00000004833	ptcd1	93	50.084	ENSPLAG00000011051	ptcd1	85	50.078	Poecilia_latipinna
ENSLOCG00000004833	ptcd1	93	50.251	ENSPMEG00000020547	ptcd1	85	49.768	Poecilia_mexicana
ENSLOCG00000004833	ptcd1	92	50.000	ENSPREG00000000059	ptcd1	83	50.000	Poecilia_reticulata
ENSLOCG00000004833	ptcd1	94	54.742	ENSPPYG00000017377	-	90	54.911	Pongo_abelii
ENSLOCG00000004833	ptcd1	82	56.667	ENSPCAG00000001852	-	82	56.667	Procavia_capensis
ENSLOCG00000004833	ptcd1	99	51.398	ENSPCOG00000018596	-	93	52.555	Propithecus_coquereli
ENSLOCG00000004833	ptcd1	62	60.000	ENSPVAG00000007529	-	63	60.000	Pteropus_vampyrus
ENSLOCG00000004833	ptcd1	94	51.575	ENSPNYG00000019993	ptcd1	83	51.752	Pundamilia_nyererei
ENSLOCG00000004833	ptcd1	98	52.215	ENSPNAG00000014931	ptcd1	92	53.752	Pygocentrus_nattereri
ENSLOCG00000004833	ptcd1	95	54.664	ENSRNOG00000000987	Ptcd1	97	51.622	Rattus_norvegicus
ENSLOCG00000004833	ptcd1	96	54.295	ENSRBIG00000043393	-	87	54.945	Rhinopithecus_bieti
ENSLOCG00000004833	ptcd1	96	54.295	ENSRROG00000036420	-	87	54.945	Rhinopithecus_roxellana
ENSLOCG00000004833	ptcd1	94	54.950	ENSSBOG00000024114	-	89	53.435	Saimiri_boliviensis_boliviensis
ENSLOCG00000004833	ptcd1	97	53.025	ENSSHAG00000011376	-	96	54.009	Sarcophilus_harrisii
ENSLOCG00000004833	ptcd1	98	59.380	ENSSFOG00015007909	ptcd1	90	61.891	Scleropages_formosus
ENSLOCG00000004833	ptcd1	94	50.166	ENSSMAG00000000218	ptcd1	93	51.192	Scophthalmus_maximus
ENSLOCG00000004833	ptcd1	95	51.220	ENSSDUG00000015671	ptcd1	86	51.572	Seriola_dumerili
ENSLOCG00000004833	ptcd1	97	50.079	ENSSLDG00000014261	ptcd1	89	50.375	Seriola_lalandi_dorsalis
ENSLOCG00000004833	ptcd1	96	53.724	ENSSPUG00000003540	-	91	53.333	Sphenodon_punctatus
ENSLOCG00000004833	ptcd1	94	52.066	ENSSPAG00000011049	ptcd1	81	53.674	Stegastes_partitus
ENSLOCG00000004833	ptcd1	97	53.907	ENSSSCG00000007622	-	96	52.782	Sus_scrofa
ENSLOCG00000004833	ptcd1	93	55.724	ENSTGUG00000007563	-	97	55.987	Taeniopygia_guttata
ENSLOCG00000004833	ptcd1	95	50.984	ENSTRUG00000013471	ptcd1	82	52.139	Takifugu_rubripes
ENSLOCG00000004833	ptcd1	92	53.820	ENSTNIG00000008271	ptcd1	88	52.283	Tetraodon_nigroviridis
ENSLOCG00000004833	ptcd1	99	52.322	ENSTBEG00000011021	-	90	53.092	Tupaia_belangeri
ENSLOCG00000004833	ptcd1	97	52.472	ENSTTRG00000003006	-	89	52.067	Tursiops_truncatus
ENSLOCG00000004833	ptcd1	97	52.632	ENSUAMG00000008049	-	91	52.226	Ursus_americanus
ENSLOCG00000004833	ptcd1	99	52.705	ENSVVUG00000008836	-	94	51.502	Vulpes_vulpes
ENSLOCG00000004833	ptcd1	96	52.202	ENSXETG00000009891	ptcd1	88	52.449	Xenopus_tropicalis
ENSLOCG00000004833	ptcd1	93	50.000	ENSXMAG00000015540	ptcd1	86	49.922	Xiphophorus_maculatus