EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000004860 (Gene tree)
Gene ID: 102682823
Gene Symbol: -
Alias: -
Full Name: NOP56 ribonucleoprotein
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 10871 bases
Position: chrLG2:12728596-12739466
Accession: 102682823
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005841	Nop	PF01798.18	1.2e-87	1	1
ENSLOCP00000005859	Nop	PF01798.18	1.3e-87	1	1
ENSLOCP00000005859	NOP5NT	PF08156.13	6.3e-22	1	1
ENSLOCP00000005841	NOP5NT	PF08156.13	6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005849	-	2026	-	ENSLOCP00000005841	563 (aa)	-	W5MBT2
ENSLOCT00000005867	-	1933	XM_006626694	ENSLOCP00000005859	588 (aa)	-	W5MBV0

Gene Model

Click here to download ENSLOCG00000004860's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004860's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000004860	-	72	45.388	ENSLOCG00000010225	nop58	75	44.499

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004860	-	87	64.139	FBgn0038964	Nop56	88	69.425	Drosophila_melanogaster