EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000004931 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 20578 bases
Position: chrLG10:6781594-6802171
Accession: 102688798
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005939	ResIII	PF04851.15	2.2e-10	1	1
ENSLOCP00000005939	DEAD	PF00270.29	8.3e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000005947	-	3805	XM_006634805	ENSLOCP00000005939	1085 (aa)	-	W5MC30

Gene Model

Click here to download ENSLOCG00000004931's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004931's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000004931	hfm1	61	33.692	ENSLOCG00000016550	ascc3	58	33.692
ENSLOCG00000004931	hfm1	80	30.274	ENSLOCG00000015198	snrnp200	75	30.274

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004931	hfm1	96	64.756	ENSG00000162669	HFM1	72	64.661	Homo_sapiens
ENSLOCG00000004931	hfm1	77	71.770	ENSAPOG00000005304	hfm1	94	71.770	Acanthochromis_polyacanthus
ENSLOCG00000004931	hfm1	99	64.279	ENSAMEG00000000432	HFM1	74	64.060	Ailuropoda_melanoleuca
ENSLOCG00000004931	hfm1	94	64.093	ENSACIG00000021553	hfm1	91	64.093	Amphilophus_citrinellus
ENSLOCG00000004931	hfm1	77	73.022	ENSAOCG00000022839	hfm1	96	76.071	Amphiprion_ocellaris
ENSLOCG00000004931	hfm1	77	72.662	ENSAPEG00000014316	hfm1	96	76.136	Amphiprion_percula
ENSLOCG00000004931	hfm1	94	66.206	ENSATEG00000019181	hfm1	91	65.150	Anabas_testudineus
ENSLOCG00000004931	hfm1	96	63.550	ENSAPLG00000013639	HFM1	72	63.454	Anas_platyrhynchos
ENSLOCG00000004931	hfm1	95	63.077	ENSANAG00000029513	HFM1	71	62.981	Aotus_nancymaae
ENSLOCG00000004931	hfm1	86	68.332	ENSACLG00000009033	hfm1	97	71.122	Astatotilapia_calliptera
ENSLOCG00000004931	hfm1	93	69.043	ENSAMXG00000006108	hfm1	69	69.043	Astyanax_mexicanus
ENSLOCG00000004931	hfm1	97	64.745	ENSBTAG00000020856	HFM1	72	64.650	Bos_taurus
ENSLOCG00000004931	hfm1	95	64.615	ENSCJAG00000001843	HFM1	71	64.519	Callithrix_jacchus
ENSLOCG00000004931	hfm1	99	63.318	ENSCAFG00000020187	HFM1	76	61.477	Canis_familiaris
ENSLOCG00000004931	hfm1	97	64.076	ENSTSYG00000014250	HFM1	73	63.981	Carlito_syrichta
ENSLOCG00000004931	hfm1	96	64.218	ENSCPOG00000007421	HFM1	74	63.992	Cavia_porcellus
ENSLOCG00000004931	hfm1	95	64.231	ENSCCAG00000033206	HFM1	71	64.231	Cebus_capucinus
ENSLOCG00000004931	hfm1	99	62.804	ENSCATG00000030987	HFM1	74	62.710	Cercocebus_atys
ENSLOCG00000004931	hfm1	96	61.983	ENSCLAG00000005173	HFM1	73	61.765	Chinchilla_lanigera
ENSLOCG00000004931	hfm1	64	52.917	ENSCSAVG00000005094	-	100	52.917	Ciona_savignyi
ENSLOCG00000004931	hfm1	92	61.361	ENSCGRG00001016995	Hfm1	70	61.461	Cricetulus_griseus_chok1gshd
ENSLOCG00000004931	hfm1	96	63.012	ENSCGRG00000017181	Hfm1	72	63.108	Cricetulus_griseus_crigri
ENSLOCG00000004931	hfm1	94	64.899	ENSCSEG00000017659	hfm1	93	64.899	Cynoglossus_semilaevis
ENSLOCG00000004931	hfm1	66	75.596	ENSCVAG00000005075	hfm1	86	75.596	Cyprinodon_variegatus
ENSLOCG00000004931	hfm1	83	70.857	ENSDARG00000104288	hfm1	81	70.857	Danio_rerio
ENSLOCG00000004931	hfm1	97	60.747	ENSDNOG00000004776	HFM1	73	60.529	Dasypus_novemcinctus
ENSLOCG00000004931	hfm1	99	60.507	ENSDORG00000014661	Hfm1	75	60.507	Dipodomys_ordii
ENSLOCG00000004931	hfm1	93	64.497	ENSEASG00005015424	HFM1	96	64.398	Equus_asinus_asinus
ENSLOCG00000004931	hfm1	96	64.233	ENSECAG00000024039	HFM1	72	64.140	Equus_caballus
ENSLOCG00000004931	hfm1	83	73.333	ENSELUG00000018944	hfm1	97	73.575	Esox_lucius
ENSLOCG00000004931	hfm1	99	63.771	ENSFCAG00000029116	HFM1	74	63.678	Felis_catus
ENSLOCG00000004931	hfm1	95	64.976	ENSFALG00000001781	HFM1	72	64.839	Ficedula_albicollis
ENSLOCG00000004931	hfm1	96	62.695	ENSFDAG00000020816	HFM1	73	62.477	Fukomys_damarensis
ENSLOCG00000004931	hfm1	89	66.598	ENSGMOG00000017436	hfm1	100	66.598	Gadus_morhua
ENSLOCG00000004931	hfm1	94	65.373	ENSGAFG00000018093	hfm1	93	71.342	Gambusia_affinis
ENSLOCG00000004931	hfm1	89	67.252	ENSGACG00000015686	hfm1	100	67.252	Gasterosteus_aculeatus
ENSLOCG00000004931	hfm1	96	64.661	ENSGGOG00000038524	HFM1	72	64.565	Gorilla_gorilla
ENSLOCG00000004931	hfm1	86	69.394	ENSHBUG00000007309	hfm1	94	65.096	Haplochromis_burtoni
ENSLOCG00000004931	hfm1	75	69.523	ENSHCOG00000019632	hfm1	97	69.523	Hippocampus_comes
ENSLOCG00000004931	hfm1	88	72.083	ENSIPUG00000017020	hfm1	92	74.350	Ictalurus_punctatus
ENSLOCG00000004931	hfm1	92	64.414	ENSJJAG00000017198	Hfm1	71	64.314	Jaculus_jaculus
ENSLOCG00000004931	hfm1	83	68.097	ENSKMAG00000002282	hfm1	90	68.097	Kryptolebias_marmoratus
ENSLOCG00000004931	hfm1	94	66.537	ENSLBEG00000006759	hfm1	97	73.072	Labrus_bergylta
ENSLOCG00000004931	hfm1	94	66.635	ENSLACG00000010698	HFM1	99	66.635	Latimeria_chalumnae
ENSLOCG00000004931	hfm1	66	70.932	ENSLAFG00000015903	-	96	70.932	Loxodonta_africana
ENSLOCG00000004931	hfm1	99	59.780	ENSMFAG00000003649	HFM1	75	59.688	Macaca_fascicularis
ENSLOCG00000004931	hfm1	99	62.362	ENSMMUG00000006819	HFM1	75	62.269	Macaca_mulatta
ENSLOCG00000004931	hfm1	72	76.953	ENSMAMG00000004623	hfm1	97	72.256	Mastacembelus_armatus
ENSLOCG00000004931	hfm1	86	68.332	ENSMZEG00005004679	hfm1	97	71.122	Maylandia_zebra
ENSLOCG00000004931	hfm1	71	70.611	ENSMGAG00000008437	HFM1	95	70.611	Meleagris_gallopavo
ENSLOCG00000004931	hfm1	96	63.228	ENSMAUG00000018858	Hfm1	72	63.324	Mesocricetus_auratus
ENSLOCG00000004931	hfm1	96	64.068	ENSMICG00000037935	HFM1	72	63.844	Microcebus_murinus
ENSLOCG00000004931	hfm1	99	61.688	ENSMOCG00000014812	Hfm1	74	61.781	Microtus_ochrogaster
ENSLOCG00000004931	hfm1	83	70.234	ENSMMOG00000006148	hfm1	94	72.674	Mola_mola
ENSLOCG00000004931	hfm1	87	69.777	ENSMALG00000002401	hfm1	94	73.077	Monopterus_albus
ENSLOCG00000004931	hfm1	91	63.636	MGP_CAROLIEiJ_G0027496	Hfm1	73	63.636	Mus_caroli
ENSLOCG00000004931	hfm1	97	62.464	ENSMUSG00000043410	Hfm1	73	62.370	Mus_musculus
ENSLOCG00000004931	hfm1	96	62.252	MGP_PahariEiJ_G0017268	Hfm1	74	60.770	Mus_pahari
ENSLOCG00000004931	hfm1	97	62.749	MGP_SPRETEiJ_G0028495	Hfm1	73	62.654	Mus_spretus
ENSLOCG00000004931	hfm1	99	61.820	ENSMPUG00000004594	HFM1	75	61.731	Mustela_putorius_furo
ENSLOCG00000004931	hfm1	99	63.153	ENSMLUG00000010200	HFM1	74	63.060	Myotis_lucifugus
ENSLOCG00000004931	hfm1	86	65.565	ENSNBRG00000002910	hfm1	97	71.308	Neolamprologus_brichardi
ENSLOCG00000004931	hfm1	96	61.678	ENSNLEG00000010285	HFM1	72	61.678	Nomascus_leucogenys
ENSLOCG00000004931	hfm1	89	62.460	ENSMEUG00000015788	HFM1	67	62.460	Notamacropus_eugenii
ENSLOCG00000004931	hfm1	80	63.731	ENSOPRG00000013916	HFM1	60	63.731	Ochotona_princeps
ENSLOCG00000004931	hfm1	96	68.467	ENSONIG00000010590	hfm1	100	68.316	Oreochromis_niloticus
ENSLOCG00000004931	hfm1	75	71.007	ENSORLG00000026844	hfm1	99	71.007	Oryzias_latipes
ENSLOCG00000004931	hfm1	94	58.523	ENSORLG00020002951	hfm1	82	58.562	Oryzias_latipes_hni
ENSLOCG00000004931	hfm1	98	63.620	ENSOMEG00000016474	hfm1	76	63.620	Oryzias_melastigma
ENSLOCG00000004931	hfm1	95	64.917	ENSOGAG00000032369	HFM1	83	64.689	Otolemur_garnettii
ENSLOCG00000004931	hfm1	99	63.551	ENSOARG00000015812	HFM1	74	63.458	Ovis_aries
ENSLOCG00000004931	hfm1	96	64.852	ENSPPAG00000024582	HFM1	78	64.756	Pan_paniscus
ENSLOCG00000004931	hfm1	99	63.678	ENSPPRG00000003270	HFM1	74	63.586	Panthera_pardus
ENSLOCG00000004931	hfm1	99	63.771	ENSPTIG00000018881	HFM1	74	63.678	Panthera_tigris_altaica
ENSLOCG00000004931	hfm1	96	64.756	ENSPTRG00000000948	HFM1	72	64.661	Pan_troglodytes
ENSLOCG00000004931	hfm1	97	63.567	ENSPANG00000009838	HFM1	73	63.472	Papio_anubis
ENSLOCG00000004931	hfm1	85	73.160	ENSPKIG00000003810	hfm1	95	75.151	Paramormyrops_kingsleyae
ENSLOCG00000004931	hfm1	76	69.928	ENSPMGG00000011059	hfm1	100	69.928	Periophthalmus_magnuspinnatus
ENSLOCG00000004931	hfm1	97	62.822	ENSPEMG00000022852	Hfm1	72	62.917	Peromyscus_maniculatus_bairdii
ENSLOCG00000004931	hfm1	98	61.046	ENSPCIG00000014233	HFM1	74	60.956	Phascolarctos_cinereus
ENSLOCG00000004931	hfm1	94	66.349	ENSPFOG00000017194	hfm1	99	66.349	Poecilia_formosa
ENSLOCG00000004931	hfm1	95	66.893	ENSPLAG00000000571	hfm1	94	65.757	Poecilia_latipinna
ENSLOCG00000004931	hfm1	97	66.006	ENSPMEG00000019475	hfm1	95	66.006	Poecilia_mexicana
ENSLOCG00000004931	hfm1	94	66.278	ENSPREG00000007803	hfm1	93	71.186	Poecilia_reticulata
ENSLOCG00000004931	hfm1	95	65.087	ENSPPYG00000001163	HFM1	71	64.990	Pongo_abelii
ENSLOCG00000004931	hfm1	66	64.242	ENSPCAG00000004289	-	50	64.242	Procavia_capensis
ENSLOCG00000004931	hfm1	93	60.516	ENSPVAG00000009713	HFM1	71	60.417	Pteropus_vampyrus
ENSLOCG00000004931	hfm1	86	68.119	ENSPNYG00000001795	hfm1	97	71.002	Pundamilia_nyererei
ENSLOCG00000004931	hfm1	84	70.318	ENSPNAG00000010865	hfm1	90	70.318	Pygocentrus_nattereri
ENSLOCG00000004931	hfm1	96	63.248	ENSRNOG00000023299	Hfm1	72	63.248	Rattus_norvegicus
ENSLOCG00000004931	hfm1	99	62.991	ENSRROG00000045569	HFM1	74	62.897	Rhinopithecus_roxellana
ENSLOCG00000004931	hfm1	94	65.078	ENSSBOG00000027456	HFM1	72	64.981	Saimiri_boliviensis_boliviensis
ENSLOCG00000004931	hfm1	57	70.900	ENSSHAG00000014616	-	70	70.900	Sarcophilus_harrisii
ENSLOCG00000004931	hfm1	95	72.963	ENSSFOG00015020129	hfm1	68	72.963	Scleropages_formosus
ENSLOCG00000004931	hfm1	83	71.602	ENSSMAG00000006907	hfm1	87	71.602	Scophthalmus_maximus
ENSLOCG00000004931	hfm1	76	73.188	ENSSDUG00000011424	hfm1	93	73.188	Seriola_dumerili
ENSLOCG00000004931	hfm1	76	73.285	ENSSLDG00000016386	hfm1	92	73.285	Seriola_lalandi_dorsalis
ENSLOCG00000004931	hfm1	92	63.719	ENSSPAG00000001023	hfm1	96	71.362	Stegastes_partitus
ENSLOCG00000004931	hfm1	99	61.293	ENSSSCG00000006912	HFM1	81	61.362	Sus_scrofa
ENSLOCG00000004931	hfm1	89	67.112	ENSTGUG00000006172	HFM1	100	67.009	Taeniopygia_guttata
ENSLOCG00000004931	hfm1	96	63.958	ENSTTRG00000013933	HFM1	73	63.862	Tursiops_truncatus
ENSLOCG00000004931	hfm1	97	63.387	ENSVPAG00000011331	HFM1	72	63.292	Vicugna_pacos
ENSLOCG00000004931	hfm1	93	63.725	ENSVVUG00000020760	HFM1	98	63.628	Vulpes_vulpes
ENSLOCG00000004931	hfm1	79	69.778	ENSXMAG00000004178	hfm1	95	69.778	Xiphophorus_maculatus