EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000004944 (Gene tree)
Gene ID: 102686386
Gene Symbol: chd5
Alias: -
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 42776 bases
Position: chrLG25:8892136-8934911
Accession: 102686386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000006007	ResIII	PF04851.15	3.4e-08	1	1
ENSLOCP00000005985	ResIII	PF04851.15	3.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000006015	-	6393	XM_006642050	ENSLOCP00000006007	1964 (aa)	XP_006642113	W5MC98
ENSLOCT00000005993	-	6459	-	ENSLOCP00000005985	1954 (aa)	-	W5MC76

Gene Model

Click here to download ENSLOCG00000004944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004944's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000004944	chd5	96	64.894	ENSLOCG00000007438	chd4a	96	66.296
ENSLOCG00000004944	chd5	98	69.052	ENSLOCG00000013965	chd3	92	70.807

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004944	chd5	94	81.025	ENSG00000116254	CHD5	96	83.595	Homo_sapiens
ENSLOCG00000004944	chd5	98	78.455	ENSAMEG00000009880	CHD5	98	80.802	Ailuropoda_melanoleuca
ENSLOCG00000004944	chd5	94	91.667	ENSACIG00000012582	chd5	99	84.494	Amphilophus_citrinellus
ENSLOCG00000004944	chd5	100	82.522	ENSAOCG00000020356	chd5	100	82.920	Amphiprion_ocellaris
ENSLOCG00000004944	chd5	94	75.825	ENSAPLG00000015475	CHD5	98	76.490	Anas_platyrhynchos
ENSLOCG00000004944	chd5	95	77.917	ENSACAG00000002441	CHD5	95	79.272	Anolis_carolinensis
ENSLOCG00000004944	chd5	86	79.408	ENSANAG00000001078	CHD5	91	81.882	Aotus_nancymaae
ENSLOCG00000004944	chd5	93	78.349	ENSACLG00000003012	chd5	96	79.282	Astatotilapia_calliptera
ENSLOCG00000004944	chd5	91	81.579	ENSAMXG00000008921	chd5	97	88.196	Astyanax_mexicanus
ENSLOCG00000004944	chd5	91	81.161	ENSBTAG00000040477	CHD5	99	81.137	Bos_taurus
ENSLOCG00000004944	chd5	94	80.655	ENSCJAG00000000101	CHD5	96	81.352	Callithrix_jacchus
ENSLOCG00000004944	chd5	91	82.047	ENSCAFG00000019545	CHD5	99	81.783	Canis_familiaris
ENSLOCG00000004944	chd5	98	80.869	ENSCAFG00020008689	CHD5	93	82.770	Canis_lupus_dingo
ENSLOCG00000004944	chd5	97	79.908	ENSCHIG00000015027	CHD5	95	80.793	Capra_hircus
ENSLOCG00000004944	chd5	94	78.010	ENSTSYG00000033991	CHD5	97	77.923	Carlito_syrichta
ENSLOCG00000004944	chd5	94	82.849	ENSCAPG00000009294	CHD5	98	82.895	Cavia_aperea
ENSLOCG00000004944	chd5	94	82.849	ENSCPOG00000025080	CHD5	98	82.895	Cavia_porcellus
ENSLOCG00000004944	chd5	94	80.895	ENSCCAG00000024756	CHD5	96	81.775	Cebus_capucinus
ENSLOCG00000004944	chd5	94	80.074	ENSCATG00000043011	CHD5	96	80.771	Cercocebus_atys
ENSLOCG00000004944	chd5	94	82.634	ENSCLAG00000010589	CHD5	98	82.859	Chinchilla_lanigera
ENSLOCG00000004944	chd5	94	81.131	ENSCSAG00000000733	CHD5	96	81.828	Chlorocebus_sabaeus
ENSLOCG00000004944	chd5	93	81.596	ENSCPBG00000019363	CHD5	100	81.489	Chrysemys_picta_bellii
ENSLOCG00000004944	chd5	94	81.491	ENSCANG00000032302	CHD5	97	81.775	Colobus_angolensis_palliatus
ENSLOCG00000004944	chd5	54	85.552	ENSCGRG00001011042	Chd5	99	85.566	Cricetulus_griseus_chok1gshd
ENSLOCG00000004944	chd5	95	81.871	ENSCGRG00000011341	Chd5	98	82.975	Cricetulus_griseus_crigri
ENSLOCG00000004944	chd5	99	83.342	ENSDARG00000105083	chd5	100	85.968	Danio_rerio
ENSLOCG00000004944	chd5	95	66.395	ENSDARG00000025789	chd4b	96	68.273	Danio_rerio
ENSLOCG00000004944	chd5	94	80.395	ENSDNOG00000046342	CHD5	92	83.225	Dasypus_novemcinctus
ENSLOCG00000004944	chd5	95	81.466	ENSDORG00000005923	Chd5	98	82.252	Dipodomys_ordii
ENSLOCG00000004944	chd5	98	79.294	ENSEASG00005021464	CHD5	94	92.754	Equus_asinus_asinus
ENSLOCG00000004944	chd5	84	94.884	ENSECAG00000025043	CHD5	96	94.884	Equus_caballus
ENSLOCG00000004944	chd5	74	89.862	ENSEEUG00000002772	CHD5	74	88.940	Erinaceus_europaeus
ENSLOCG00000004944	chd5	87	87.938	ENSELUG00000010742	chd5	93	95.431	Esox_lucius
ENSLOCG00000004944	chd5	95	81.155	ENSFCAG00000006319	CHD5	96	81.775	Felis_catus
ENSLOCG00000004944	chd5	98	78.913	ENSFALG00000009740	CHD5	99	80.329	Ficedula_albicollis
ENSLOCG00000004944	chd5	94	82.129	ENSFDAG00000012881	CHD5	95	81.166	Fukomys_damarensis
ENSLOCG00000004944	chd5	98	79.071	ENSGALG00000000747	CHD5	99	80.484	Gallus_gallus
ENSLOCG00000004944	chd5	55	87.085	ENSGACG00000004389	chd5	93	86.753	Gasterosteus_aculeatus
ENSLOCG00000004944	chd5	87	94.860	ENSGAGG00000001590	CHD5	99	94.500	Gopherus_agassizii
ENSLOCG00000004944	chd5	94	81.386	ENSGGOG00000000708	CHD5	98	81.881	Gorilla_gorilla
ENSLOCG00000004944	chd5	93	78.517	ENSHBUG00000013453	chd5	96	79.442	Haplochromis_burtoni
ENSLOCG00000004944	chd5	95	81.615	ENSHGLG00000018184	CHD5	99	81.247	Heterocephalus_glaber_female
ENSLOCG00000004944	chd5	98	72.084	ENSHGLG00100013261	CHD5	96	74.806	Heterocephalus_glaber_male
ENSLOCG00000004944	chd5	94	83.324	ENSIPUG00000005446	chd5	99	84.341	Ictalurus_punctatus
ENSLOCG00000004944	chd5	94	82.903	ENSSTOG00000002778	CHD5	98	83.074	Ictidomys_tridecemlineatus
ENSLOCG00000004944	chd5	95	81.629	ENSJJAG00000019072	Chd5	96	82.581	Jaculus_jaculus
ENSLOCG00000004944	chd5	94	81.339	ENSLAFG00000006348	CHD5	100	80.911	Loxodonta_africana
ENSLOCG00000004944	chd5	94	81.078	ENSMFAG00000033993	CHD5	99	82.057	Macaca_fascicularis
ENSLOCG00000004944	chd5	94	82.822	ENSMMUG00000016838	CHD5	96	83.154	Macaca_mulatta
ENSLOCG00000004944	chd5	94	81.131	ENSMNEG00000040044	CHD5	96	81.828	Macaca_nemestrina
ENSLOCG00000004944	chd5	94	78.352	ENSMLEG00000039166	CHD5	98	78.739	Mandrillus_leucophaeus
ENSLOCG00000004944	chd5	87	85.465	ENSMZEG00005000841	chd5	92	85.884	Maylandia_zebra
ENSLOCG00000004944	chd5	93	80.536	ENSMGAG00000001055	CHD5	98	80.390	Meleagris_gallopavo
ENSLOCG00000004944	chd5	95	79.968	ENSMICG00000017862	CHD5	96	80.603	Microcebus_murinus
ENSLOCG00000004944	chd5	95	81.552	ENSMOCG00000011049	Chd5	96	82.805	Microtus_ochrogaster
ENSLOCG00000004944	chd5	97	63.581	ENSMODG00000006294	CHD5	76	84.083	Monodelphis_domestica
ENSLOCG00000004944	chd5	93	84.537	ENSMALG00000002831	chd5	99	83.742	Monopterus_albus
ENSLOCG00000004944	chd5	94	81.078	MGP_CAROLIEiJ_G0026857	Chd5	96	81.204	Mus_caroli
ENSLOCG00000004944	chd5	95	81.326	ENSMUSG00000005045	Chd5	96	82.359	Mus_musculus
ENSLOCG00000004944	chd5	95	81.330	MGP_PahariEiJ_G0029205	Chd5	96	82.277	Mus_pahari
ENSLOCG00000004944	chd5	95	81.562	MGP_SPRETEiJ_G0027850	Chd5	96	82.599	Mus_spretus
ENSLOCG00000004944	chd5	97	82.724	ENSMPUG00000007122	CHD5	97	79.139	Mustela_putorius_furo
ENSLOCG00000004944	chd5	97	79.115	ENSNGAG00000019812	Chd5	95	79.948	Nannospalax_galili
ENSLOCG00000004944	chd5	94	79.028	ENSNLEG00000010320	CHD5	98	79.398	Nomascus_leucogenys
ENSLOCG00000004944	chd5	83	77.266	ENSOPRG00000004304	CHD5	83	82.258	Ochotona_princeps
ENSLOCG00000004944	chd5	94	82.948	ENSODEG00000010262	CHD5	98	82.473	Octodon_degus
ENSLOCG00000004944	chd5	95	82.291	ENSONIG00000000619	chd5	95	83.040	Oreochromis_niloticus
ENSLOCG00000004944	chd5	97	69.199	ENSOANG00000001819	CHD5	99	68.795	Ornithorhynchus_anatinus
ENSLOCG00000004944	chd5	94	80.560	ENSOGAG00000005703	CHD5	94	81.868	Otolemur_garnettii
ENSLOCG00000004944	chd5	96	78.060	ENSOARG00000013425	CHD5	95	80.628	Ovis_aries
ENSLOCG00000004944	chd5	94	80.983	ENSPPAG00000034048	CHD5	98	81.785	Pan_paniscus
ENSLOCG00000004944	chd5	95	81.033	ENSPPRG00000009453	CHD5	96	81.485	Panthera_pardus
ENSLOCG00000004944	chd5	95	75.116	ENSPTIG00000013926	CHD5	97	75.573	Panthera_tigris_altaica
ENSLOCG00000004944	chd5	94	80.983	ENSPTRG00000000075	CHD5	96	81.785	Pan_troglodytes
ENSLOCG00000004944	chd5	94	81.184	ENSPANG00000006765	CHD5	96	81.881	Papio_anubis
ENSLOCG00000004944	chd5	93	83.153	ENSPKIG00000004282	chd5	97	82.155	Paramormyrops_kingsleyae
ENSLOCG00000004944	chd5	93	74.310	ENSPSIG00000006414	CHD5	99	75.947	Pelodiscus_sinensis
ENSLOCG00000004944	chd5	64	86.078	ENSPEMG00000014799	Chd5	97	86.396	Peromyscus_maniculatus_bairdii
ENSLOCG00000004944	chd5	99	81.549	ENSPCIG00000028310	CHD5	95	82.597	Phascolarctos_cinereus
ENSLOCG00000004944	chd5	88	88.312	ENSPLAG00000005343	chd5	92	87.342	Poecilia_latipinna
ENSLOCG00000004944	chd5	88	91.700	ENSPPYG00000001952	CHD5	97	80.085	Pongo_abelii
ENSLOCG00000004944	chd5	95	80.462	ENSPCOG00000022930	CHD5	96	81.933	Propithecus_coquereli
ENSLOCG00000004944	chd5	93	82.350	ENSPNYG00000003183	chd5	99	83.015	Pundamilia_nyererei
ENSLOCG00000004944	chd5	95	80.292	ENSRNOG00000011268	Chd5	97	81.211	Rattus_norvegicus
ENSLOCG00000004944	chd5	87	90.909	ENSRBIG00000032140	CHD5	97	84.547	Rhinopithecus_bieti
ENSLOCG00000004944	chd5	94	80.867	ENSRROG00000041146	CHD5	96	81.564	Rhinopithecus_roxellana
ENSLOCG00000004944	chd5	97	76.489	ENSSBOG00000001955	CHD5	99	81.969	Saimiri_boliviensis_boliviensis
ENSLOCG00000004944	chd5	94	75.588	ENSSHAG00000018641	CHD5	99	75.947	Sarcophilus_harrisii
ENSLOCG00000004944	chd5	100	86.314	ENSSFOG00015006296	chd5	100	85.265	Scleropages_formosus
ENSLOCG00000004944	chd5	93	81.307	ENSSDUG00000017526	chd5	94	87.642	Seriola_dumerili
ENSLOCG00000004944	chd5	95	75.040	ENSSPUG00000010622	CHD5	97	75.428	Sphenodon_punctatus
ENSLOCG00000004944	chd5	94	80.085	ENSSSCG00000003366	CHD5	99	81.947	Sus_scrofa
ENSLOCG00000004944	chd5	90	78.035	ENSTGUG00000002634	-	100	78.896	Taeniopygia_guttata
ENSLOCG00000004944	chd5	52	86.095	ENSTNIG00000004346	chd5	99	85.277	Tetraodon_nigroviridis
ENSLOCG00000004944	chd5	95	81.799	ENSTTRG00000010468	CHD5	96	81.565	Tursiops_truncatus
ENSLOCG00000004944	chd5	95	82.729	ENSUAMG00000024509	CHD5	95	92.718	Ursus_americanus
ENSLOCG00000004944	chd5	95	78.370	ENSUMAG00000024173	CHD5	98	78.441	Ursus_maritimus
ENSLOCG00000004944	chd5	98	79.751	ENSVVUG00000026480	CHD5	94	94.884	Vulpes_vulpes
ENSLOCG00000004944	chd5	96	77.689	ENSXETG00000002904	chd5	100	77.418	Xenopus_tropicalis
ENSLOCG00000004944	chd5	55	87.035	ENSXCOG00000014202	chd5	95	86.023	Xiphophorus_couchianus