EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000004978 (Gene tree)
Gene ID: 102689055
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 31703 bases
Position: chrLG6:9265317-9297019
Accession: 102689055
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000005995	zf-C2H2	PF00096.26	1.6e-18	1	3
ENSLOCP00000005995	zf-C2H2	PF00096.26	1.6e-18	2	3
ENSLOCP00000005995	zf-C2H2	PF00096.26	1.6e-18	3	3
ENSLOCP00000006019	zf-C2H2	PF00096.26	1.9e-18	1	3
ENSLOCP00000006019	zf-C2H2	PF00096.26	1.9e-18	2	3
ENSLOCP00000006019	zf-C2H2	PF00096.26	1.9e-18	3	3
ENSLOCP00000005995	zf-met	PF12874.7	3e-06	1	1
ENSLOCP00000006019	zf-met	PF12874.7	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000006003	-	5810	-	ENSLOCP00000005995	760 (aa)	-	W5MC86
ENSLOCT00000006027	-	5753	XM_006631437	ENSLOCP00000006019	774 (aa)	XP_006631500	W5MCB0

Gene Model

Click here to download ENSLOCG00000004978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000004978's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000004978	prdm1b	50	59.102	ENSAPOG00000022084	prdm1b	80	60.988	Acanthochromis_polyacanthus
ENSLOCG00000004978	prdm1b	63	56.977	ENSAPOG00000014135	-	63	56.977	Acanthochromis_polyacanthus
ENSLOCG00000004978	prdm1b	67	51.803	ENSACIG00000009747	-	68	51.803	Amphilophus_citrinellus
ENSLOCG00000004978	prdm1b	62	75.362	ENSACIG00000014426	prdm1b	75	75.362	Amphilophus_citrinellus
ENSLOCG00000004978	prdm1b	78	53.846	ENSAOCG00000002230	prdm1b	97	53.459	Amphiprion_ocellaris
ENSLOCG00000004978	prdm1b	77	72.619	ENSAPEG00000019826	prdm1b	83	72.619	Amphiprion_percula
ENSLOCG00000004978	prdm1b	61	54.135	ENSATEG00000014034	-	62	54.135	Anabas_testudineus
ENSLOCG00000004978	prdm1b	76	59.091	ENSATEG00000021017	prdm1a	99	44.051	Anabas_testudineus
ENSLOCG00000004978	prdm1b	64	74.648	ENSATEG00000006924	prdm1b	80	74.648	Anabas_testudineus
ENSLOCG00000004978	prdm1b	63	72.000	ENSACLG00000005487	prdm1b	72	72.000	Astatotilapia_calliptera
ENSLOCG00000004978	prdm1b	93	41.860	ENSCSEG00000009707	prdm1a	75	57.143	Cynoglossus_semilaevis
ENSLOCG00000004978	prdm1b	78	74.269	ENSCVAG00000016746	prdm1b	93	65.196	Cyprinodon_variegatus
ENSLOCG00000004978	prdm1b	89	43.443	ENSCVAG00000019081	prdm1a	92	43.324	Cyprinodon_variegatus
ENSLOCG00000004978	prdm1b	66	76.056	ENSFHEG00000019848	prdm1b	80	76.056	Fundulus_heteroclitus
ENSLOCG00000004978	prdm1b	65	53.623	ENSGAFG00000013012	-	64	53.623	Gambusia_affinis
ENSLOCG00000004978	prdm1b	99	52.045	ENSGAFG00000016191	prdm1b	72	79.412	Gambusia_affinis
ENSLOCG00000004978	prdm1b	95	51.609	ENSGACG00000002716	prdm1b	99	53.306	Gasterosteus_aculeatus
ENSLOCG00000004978	prdm1b	62	76.056	ENSHBUG00000001475	prdm1b	76	76.056	Haplochromis_burtoni
ENSLOCG00000004978	prdm1b	85	49.120	ENSHCOG00000003617	prdm1b	98	51.786	Hippocampus_comes
ENSLOCG00000004978	prdm1b	97	47.526	ENSIPUG00000013740	prdm1b	82	67.857	Ictalurus_punctatus
ENSLOCG00000004978	prdm1b	78	52.885	ENSKMAG00000011218	prdm1b	90	53.045	Kryptolebias_marmoratus
ENSLOCG00000004978	prdm1b	71	56.684	ENSKMAG00000017597	prdm1a	77	56.684	Kryptolebias_marmoratus
ENSLOCG00000004978	prdm1b	96	38.232	ENSKMAG00000016247	-	95	38.279	Kryptolebias_marmoratus
ENSLOCG00000004978	prdm1b	78	73.810	ENSLBEG00000020955	prdm1b	83	73.810	Labrus_bergylta
ENSLOCG00000004978	prdm1b	64	72.000	ENSMZEG00005026361	prdm1b	76	72.000	Maylandia_zebra
ENSLOCG00000004978	prdm1b	80	53.943	ENSMMOG00000013458	prdm1b	95	54.416	Mola_mola
ENSLOCG00000004978	prdm1b	60	56.228	ENSMALG00000000462	-	63	56.228	Monopterus_albus
ENSLOCG00000004978	prdm1b	87	47.731	ENSMALG00000011410	prdm1b	98	52.560	Monopterus_albus
ENSLOCG00000004978	prdm1b	82	73.810	ENSONIG00000013583	prdm1b	83	73.810	Oreochromis_niloticus
ENSLOCG00000004978	prdm1b	70	49.524	ENSONIG00000014709	-	68	49.524	Oreochromis_niloticus
ENSLOCG00000004978	prdm1b	64	72.059	ENSORLG00000010025	prdm1b	78	72.059	Oryzias_latipes
ENSLOCG00000004978	prdm1b	65	69.863	ENSORLG00015009022	prdm1b	95	51.468	Oryzias_latipes_hsok
ENSLOCG00000004978	prdm1b	72	68.421	ENSPKIG00000022335	prdm1b	79	69.375	Paramormyrops_kingsleyae
ENSLOCG00000004978	prdm1b	87	54.376	ENSPFOG00000003103	prdm1b	100	54.559	Poecilia_formosa
ENSLOCG00000004978	prdm1b	65	76.389	ENSPLAG00000018491	prdm1b	80	76.389	Poecilia_latipinna
ENSLOCG00000004978	prdm1b	65	76.389	ENSPMEG00000007869	prdm1b	80	76.389	Poecilia_mexicana
ENSLOCG00000004978	prdm1b	99	51.368	ENSPREG00000011327	prdm1b	79	79.167	Poecilia_reticulata
ENSLOCG00000004978	prdm1b	95	47.098	ENSPVAG00000011732	PRDM1	94	47.237	Pteropus_vampyrus
ENSLOCG00000004978	prdm1b	97	43.230	ENSPNAG00000028442	prdm1a	95	43.544	Pygocentrus_nattereri
ENSLOCG00000004978	prdm1b	90	53.041	ENSSFOG00015021896	prdm1b	78	67.442	Scleropages_formosus
ENSLOCG00000004978	prdm1b	78	72.619	ENSSMAG00000020467	prdm1b	83	72.619	Scophthalmus_maximus
ENSLOCG00000004978	prdm1b	65	55.319	ENSSMAG00000017518	-	63	55.319	Scophthalmus_maximus
ENSLOCG00000004978	prdm1b	66	53.115	ENSSDUG00000000524	-	65	53.115	Seriola_dumerili
ENSLOCG00000004978	prdm1b	66	76.056	ENSSDUG00000020610	prdm1b	81	76.056	Seriola_dumerili
ENSLOCG00000004978	prdm1b	62	57.303	ENSSLDG00000001957	-	61	57.303	Seriola_lalandi_dorsalis
ENSLOCG00000004978	prdm1b	79	75.000	ENSSLDG00000021973	prdm1b	84	75.000	Seriola_lalandi_dorsalis
ENSLOCG00000004978	prdm1b	61	55.634	ENSSPAG00000009830	-	63	55.634	Stegastes_partitus
ENSLOCG00000004978	prdm1b	63	76.056	ENSSPAG00000000803	prdm1b	80	76.056	Stegastes_partitus
ENSLOCG00000004978	prdm1b	78	75.904	ENSXCOG00000018920	prdm1b	81	76.190	Xiphophorus_couchianus
ENSLOCG00000004978	prdm1b	78	74.405	ENSXMAG00000016765	prdm1b	79	74.405	Xiphophorus_maculatus