EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000005210 (Gene tree)
Gene ID: 102695334
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 40439 bases
Position: chrLG6:9817606-9858044
Accession: 102695334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000006277	PUF	PF00806.19	1.3e-70	1	8
ENSLOCP00000006277	PUF	PF00806.19	1.3e-70	2	8
ENSLOCP00000006277	PUF	PF00806.19	1.3e-70	3	8
ENSLOCP00000006277	PUF	PF00806.19	1.3e-70	4	8
ENSLOCP00000006277	PUF	PF00806.19	1.3e-70	5	8
ENSLOCP00000006277	PUF	PF00806.19	1.3e-70	6	8
ENSLOCP00000006277	PUF	PF00806.19	1.3e-70	7	8
ENSLOCP00000006277	PUF	PF00806.19	1.3e-70	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000006285	-	4034	XM_006631298	ENSLOCP00000006277	1190 (aa)	XP_006631361	W5MD18

Gene Model

Click here to download ENSLOCG00000005210's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000005210's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000005210	pum1	96	76.042	ENSLOCG00000017196	pum2	100	72.682

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000005210	pum1	95	96.377	ENSG00000134644	PUM1	99	96.377	Homo_sapiens
ENSLOCG00000005210	pum1	99	80.833	ENSAPOG00000021632	pum1	100	82.083	Acanthochromis_polyacanthus
ENSLOCG00000005210	pum1	100	88.186	ENSAMEG00000017656	PUM1	97	88.020	Ailuropoda_melanoleuca
ENSLOCG00000005210	pum1	99	80.667	ENSACIG00000021013	pum1	100	81.833	Amphilophus_citrinellus
ENSLOCG00000005210	pum1	99	80.833	ENSAOCG00000003944	pum1	100	94.217	Amphiprion_ocellaris
ENSLOCG00000005210	pum1	99	80.833	ENSAPEG00000014550	pum1	100	94.217	Amphiprion_percula
ENSLOCG00000005210	pum1	99	81.083	ENSATEG00000016004	pum1	100	94.217	Anabas_testudineus
ENSLOCG00000005210	pum1	99	88.982	ENSAPLG00000009351	PUM1	100	88.815	Anas_platyrhynchos
ENSLOCG00000005210	pum1	99	88.397	ENSACAG00000000682	PUM1	98	88.314	Anolis_carolinensis
ENSLOCG00000005210	pum1	95	96.135	ENSANAG00000027865	PUM1	100	96.135	Aotus_nancymaae
ENSLOCG00000005210	pum1	89	82.730	ENSACLG00000019354	pum1	100	83.844	Astatotilapia_calliptera
ENSLOCG00000005210	pum1	100	84.925	ENSAMXG00000020607	pum1	97	85.092	Astyanax_mexicanus
ENSLOCG00000005210	pum1	95	96.860	ENSBTAG00000018979	PUM1	100	96.860	Bos_taurus
ENSLOCG00000005210	pum1	95	96.377	ENSCJAG00000006035	PUM1	100	96.377	Callithrix_jacchus
ENSLOCG00000005210	pum1	99	85.786	ENSCAFG00000011205	PUM1	100	86.227	Canis_familiaris
ENSLOCG00000005210	pum1	86	96.377	ENSCAFG00020024616	PUM1	98	96.377	Canis_lupus_dingo
ENSLOCG00000005210	pum1	95	96.377	ENSCHIG00000012952	PUM1	100	96.377	Capra_hircus
ENSLOCG00000005210	pum1	99	88.314	ENSTSYG00000008868	PUM1	100	91.925	Carlito_syrichta
ENSLOCG00000005210	pum1	99	87.980	ENSCPOG00000031613	PUM1	100	91.304	Cavia_porcellus
ENSLOCG00000005210	pum1	95	96.860	ENSCATG00000017991	PUM1	100	96.860	Cercocebus_atys
ENSLOCG00000005210	pum1	95	95.894	ENSCLAG00000007662	PUM1	100	95.894	Chinchilla_lanigera
ENSLOCG00000005210	pum1	99	87.262	ENSCSAG00000001028	PUM1	100	87.262	Chlorocebus_sabaeus
ENSLOCG00000005210	pum1	93	80.339	ENSCHOG00000010245	PUM1	93	79.915	Choloepus_hoffmanni
ENSLOCG00000005210	pum1	95	97.101	ENSCPBG00000009288	PUM1	100	97.101	Chrysemys_picta_bellii
ENSLOCG00000005210	pum1	95	96.377	ENSCANG00000042606	PUM1	100	96.377	Colobus_angolensis_palliatus
ENSLOCG00000005210	pum1	99	87.886	ENSCGRG00001024949	Pum1	100	91.418	Cricetulus_griseus_chok1gshd
ENSLOCG00000005210	pum1	99	87.886	ENSCGRG00000014197	Pum1	100	91.418	Cricetulus_griseus_crigri
ENSLOCG00000005210	pum1	89	82.080	ENSCSEG00000015981	pum1	100	82.730	Cynoglossus_semilaevis
ENSLOCG00000005210	pum1	99	80.667	ENSCVAG00000007043	pum1	100	81.667	Cyprinodon_variegatus
ENSLOCG00000005210	pum1	99	83.459	ENSDARG00000099256	pum1	100	84.131	Danio_rerio
ENSLOCG00000005210	pum1	99	88.230	ENSDNOG00000010939	PUM1	100	88.147	Dasypus_novemcinctus
ENSLOCG00000005210	pum1	85	95.894	ENSDORG00000001875	Pum1	100	95.894	Dipodomys_ordii
ENSLOCG00000005210	pum1	88	84.660	ENSETEG00000004355	PUM1	87	84.563	Echinops_telfairi
ENSLOCG00000005210	pum1	99	88.230	ENSEASG00005010813	PUM1	100	88.063	Equus_asinus_asinus
ENSLOCG00000005210	pum1	99	88.230	ENSECAG00000021369	PUM1	100	88.063	Equus_caballus
ENSLOCG00000005210	pum1	77	96.000	ENSEEUG00000003871	PUM1	74	96.000	Erinaceus_europaeus
ENSLOCG00000005210	pum1	99	79.867	ENSELUG00000002409	pum1	100	88.089	Esox_lucius
ENSLOCG00000005210	pum1	95	96.860	ENSFCAG00000010374	PUM1	100	96.860	Felis_catus
ENSLOCG00000005210	pum1	100	87.562	ENSFALG00000001214	PUM1	97	87.386	Ficedula_albicollis
ENSLOCG00000005210	pum1	99	87.980	ENSFDAG00000011319	PUM1	100	91.304	Fukomys_damarensis
ENSLOCG00000005210	pum1	92	96.559	ENSGALG00000042598	PUM1	99	96.559	Gallus_gallus
ENSLOCG00000005210	pum1	99	80.333	ENSGAFG00000015617	pum1	100	93.735	Gambusia_affinis
ENSLOCG00000005210	pum1	99	81.047	ENSGACG00000005717	pum1	100	82.558	Gasterosteus_aculeatus
ENSLOCG00000005210	pum1	92	96.761	ENSGAGG00000001290	PUM1	99	96.761	Gopherus_agassizii
ENSLOCG00000005210	pum1	95	96.377	ENSGGOG00000011983	PUM1	100	96.377	Gorilla_gorilla
ENSLOCG00000005210	pum1	99	80.833	ENSHBUG00000018718	pum1	100	81.833	Haplochromis_burtoni
ENSLOCG00000005210	pum1	99	87.896	ENSHGLG00000013819	Pum1	100	91.180	Heterocephalus_glaber_female
ENSLOCG00000005210	pum1	99	87.896	ENSHGLG00100008621	Pum1	100	91.180	Heterocephalus_glaber_male
ENSLOCG00000005210	pum1	89	78.273	ENSHCOG00000005149	pum1	100	80.409	Hippocampus_comes
ENSLOCG00000005210	pum1	99	82.707	ENSIPUG00000020421	pum1	100	83.472	Ictalurus_punctatus
ENSLOCG00000005210	pum1	99	88.230	ENSSTOG00000010757	PUM1	100	91.553	Ictidomys_tridecemlineatus
ENSLOCG00000005210	pum1	99	87.813	ENSJJAG00000000530	Pum1	100	90.932	Jaculus_jaculus
ENSLOCG00000005210	pum1	99	80.583	ENSKMAG00000003481	pum1	100	81.500	Kryptolebias_marmoratus
ENSLOCG00000005210	pum1	99	80.234	ENSLBEG00000002527	pum1	100	81.568	Labrus_bergylta
ENSLOCG00000005210	pum1	100	85.571	ENSLACG00000017188	PUM1	99	85.928	Latimeria_chalumnae
ENSLOCG00000005210	pum1	99	87.563	ENSLAFG00000003178	PUM1	100	86.895	Loxodonta_africana
ENSLOCG00000005210	pum1	95	96.860	ENSMFAG00000010291	PUM1	100	96.860	Macaca_fascicularis
ENSLOCG00000005210	pum1	95	96.377	ENSMMUG00000013520	PUM1	100	96.377	Macaca_mulatta
ENSLOCG00000005210	pum1	95	96.377	ENSMNEG00000034639	PUM1	100	96.377	Macaca_nemestrina
ENSLOCG00000005210	pum1	95	96.377	ENSMLEG00000038743	PUM1	100	96.377	Mandrillus_leucophaeus
ENSLOCG00000005210	pum1	99	80.833	ENSMAMG00000011606	pum1	100	81.833	Mastacembelus_armatus
ENSLOCG00000005210	pum1	99	80.833	ENSMZEG00005005834	pum1	100	81.833	Maylandia_zebra
ENSLOCG00000005210	pum1	100	87.937	ENSMGAG00000000724	PUM1	100	89.380	Meleagris_gallopavo
ENSLOCG00000005210	pum1	99	87.886	ENSMAUG00000022090	Pum1	100	90.920	Mesocricetus_auratus
ENSLOCG00000005210	pum1	93	93.253	ENSMICG00000012213	-	100	93.253	Microcebus_murinus
ENSLOCG00000005210	pum1	95	96.618	ENSMICG00000007713	-	100	96.618	Microcebus_murinus
ENSLOCG00000005210	pum1	99	88.230	ENSMOCG00000015463	Pum1	100	91.418	Microtus_ochrogaster
ENSLOCG00000005210	pum1	85	93.494	ENSMMOG00000019817	pum1	100	93.735	Mola_mola
ENSLOCG00000005210	pum1	99	87.990	ENSMODG00000017067	PUM1	100	87.656	Monodelphis_domestica
ENSLOCG00000005210	pum1	99	87.896	MGP_CAROLIEiJ_G0026549	Pum1	100	91.180	Mus_caroli
ENSLOCG00000005210	pum1	99	87.896	ENSMUSG00000028580	Pum1	100	91.056	Mus_musculus
ENSLOCG00000005210	pum1	99	87.813	MGP_PahariEiJ_G0028881	Pum1	100	91.056	Mus_pahari
ENSLOCG00000005210	pum1	99	87.813	MGP_SPRETEiJ_G0027529	Pum1	100	90.932	Mus_spretus
ENSLOCG00000005210	pum1	99	88.230	ENSMPUG00000015454	PUM1	100	88.063	Mustela_putorius_furo
ENSLOCG00000005210	pum1	99	87.980	ENSMLUG00000006490	PUM1	100	87.813	Myotis_lucifugus
ENSLOCG00000005210	pum1	99	88.230	ENSNGAG00000002378	Pum1	100	91.553	Nannospalax_galili
ENSLOCG00000005210	pum1	79	87.113	ENSNBRG00000010689	pum1	100	87.732	Neolamprologus_brichardi
ENSLOCG00000005210	pum1	95	92.754	ENSNLEG00000001151	PUM1	100	92.754	Nomascus_leucogenys
ENSLOCG00000005210	pum1	75	95.455	ENSMEUG00000000976	-	71	86.667	Notamacropus_eugenii
ENSLOCG00000005210	pum1	83	97.196	ENSOPRG00000001776	PUM1	75	97.196	Ochotona_princeps
ENSLOCG00000005210	pum1	99	87.990	ENSODEG00000003465	PUM1	100	91.304	Octodon_degus
ENSLOCG00000005210	pum1	100	81.086	ENSONIG00000002290	pum1	100	82.000	Oreochromis_niloticus
ENSLOCG00000005210	pum1	81	72.301	ENSOANG00000004902	-	100	71.283	Ornithorhynchus_anatinus
ENSLOCG00000005210	pum1	99	88.043	ENSOCUG00000008641	PUM1	99	87.876	Oryctolagus_cuniculus
ENSLOCG00000005210	pum1	99	81.645	ENSORLG00000011482	pum1	100	81.645	Oryzias_latipes
ENSLOCG00000005210	pum1	99	81.645	ENSORLG00020019461	pum1	100	81.645	Oryzias_latipes_hni
ENSLOCG00000005210	pum1	99	81.728	ENSORLG00015011375	pum1	100	81.728	Oryzias_latipes_hsok
ENSLOCG00000005210	pum1	99	85.667	ENSOGAG00000011063	PUM1	100	85.583	Otolemur_garnettii
ENSLOCG00000005210	pum1	95	96.377	ENSOARG00000001899	PUM1	100	96.377	Ovis_aries
ENSLOCG00000005210	pum1	95	96.377	ENSPPAG00000044003	PUM1	100	96.377	Pan_paniscus
ENSLOCG00000005210	pum1	99	88.314	ENSPPRG00000001370	PUM1	100	91.677	Panthera_pardus
ENSLOCG00000005210	pum1	99	88.147	ENSPTIG00000010798	PUM1	100	91.429	Panthera_tigris_altaica
ENSLOCG00000005210	pum1	95	96.377	ENSPTRG00000000453	PUM1	100	96.377	Pan_troglodytes
ENSLOCG00000005210	pum1	95	96.860	ENSPANG00000016338	PUM1	100	96.860	Papio_anubis
ENSLOCG00000005210	pum1	99	84.123	ENSPKIG00000010578	pum1	100	83.541	Paramormyrops_kingsleyae
ENSLOCG00000005210	pum1	99	88.564	ENSPSIG00000014118	PUM1	100	88.481	Pelodiscus_sinensis
ENSLOCG00000005210	pum1	79	85.276	ENSPMGG00000005836	pum1	100	86.135	Periophthalmus_magnuspinnatus
ENSLOCG00000005210	pum1	99	87.886	ENSPEMG00000010009	Pum1	100	90.920	Peromyscus_maniculatus_bairdii
ENSLOCG00000005210	pum1	95	96.860	ENSPCIG00000014151	PUM1	100	96.860	Phascolarctos_cinereus
ENSLOCG00000005210	pum1	94	82.597	ENSPFOG00000007289	pum1	99	87.365	Poecilia_formosa
ENSLOCG00000005210	pum1	95	82.027	ENSPLAG00000007256	pum1	100	83.177	Poecilia_latipinna
ENSLOCG00000005210	pum1	90	81.961	ENSPMEG00000019543	pum1	99	83.010	Poecilia_mexicana
ENSLOCG00000005210	pum1	99	81.250	ENSPREG00000005195	pum1	100	85.749	Poecilia_reticulata
ENSLOCG00000005210	pum1	99	86.661	ENSPPYG00000001621	PUM1	100	86.579	Pongo_abelii
ENSLOCG00000005210	pum1	77	96.605	ENSPCAG00000001979	PUM1	74	96.605	Procavia_capensis
ENSLOCG00000005210	pum1	95	96.618	ENSPCOG00000004398	PUM1	100	96.618	Propithecus_coquereli
ENSLOCG00000005210	pum1	100	85.928	ENSPVAG00000005207	PUM1	97	85.917	Pteropus_vampyrus
ENSLOCG00000005210	pum1	99	80.917	ENSPNYG00000009518	pum1	100	84.337	Pundamilia_nyererei
ENSLOCG00000005210	pum1	99	84.719	ENSPNAG00000026728	pum1	100	86.316	Pygocentrus_nattereri
ENSLOCG00000005210	pum1	99	87.730	ENSRNOG00000011709	Pum1	100	87.563	Rattus_norvegicus
ENSLOCG00000005210	pum1	95	96.860	ENSRBIG00000042521	PUM1	100	96.860	Rhinopithecus_bieti
ENSLOCG00000005210	pum1	95	96.377	ENSRROG00000020156	PUM1	100	96.377	Rhinopithecus_roxellana
ENSLOCG00000005210	pum1	95	96.377	ENSSBOG00000032037	PUM1	100	96.377	Saimiri_boliviensis_boliviensis
ENSLOCG00000005210	pum1	99	88.083	ENSSHAG00000010918	PUM1	100	87.833	Sarcophilus_harrisii
ENSLOCG00000005210	pum1	99	81.250	ENSSMAG00000010918	pum1	100	82.083	Scophthalmus_maximus
ENSLOCG00000005210	pum1	99	81.167	ENSSDUG00000009021	pum1	100	82.250	Seriola_dumerili
ENSLOCG00000005210	pum1	95	82.550	ENSSLDG00000009667	pum1	100	83.804	Seriola_lalandi_dorsalis
ENSLOCG00000005210	pum1	94	90.045	ENSSARG00000003055	PUM1	92	89.821	Sorex_araneus
ENSLOCG00000005210	pum1	99	88.564	ENSSPUG00000006267	PUM1	100	88.481	Sphenodon_punctatus
ENSLOCG00000005210	pum1	99	80.833	ENSSPAG00000016636	pum1	100	94.217	Stegastes_partitus
ENSLOCG00000005210	pum1	99	95.344	ENSSSCG00000003591	PUM1	100	96.860	Sus_scrofa
ENSLOCG00000005210	pum1	99	81.068	ENSTRUG00000013121	pum1	100	88.104	Takifugu_rubripes
ENSLOCG00000005210	pum1	100	80.798	ENSTNIG00000016983	pum1	99	81.962	Tetraodon_nigroviridis
ENSLOCG00000005210	pum1	87	93.902	ENSTBEG00000013810	PUM1	89	93.902	Tupaia_belangeri
ENSLOCG00000005210	pum1	91	89.927	ENSTTRG00000007436	PUM1	89	89.781	Tursiops_truncatus
ENSLOCG00000005210	pum1	98	86.837	ENSUAMG00000018262	-	100	86.654	Ursus_americanus
ENSLOCG00000005210	pum1	95	96.860	ENSUMAG00000009211	PUM1	100	96.860	Ursus_maritimus
ENSLOCG00000005210	pum1	92	92.422	ENSVPAG00000005902	PUM1	92	92.174	Vicugna_pacos
ENSLOCG00000005210	pum1	95	96.860	ENSVVUG00000014631	PUM1	100	96.860	Vulpes_vulpes
ENSLOCG00000005210	pum1	100	83.611	ENSXETG00000012904	pum1	99	83.514	Xenopus_tropicalis
ENSLOCG00000005210	pum1	99	80.250	ENSXMAG00000002945	pum1	100	83.386	Xiphophorus_maculatus