EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000005336 (Gene tree)
Gene ID: 102685573
Gene Symbol: si:ch211-263k4.2
Alias: -
Full Name: PR/SET domain 16
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 222379 bases
Position: chrLG25:9374577-9596955
Accession: 102685573
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000006466	zf-C2H2	PF00096.26	5.1e-50	1	9
ENSLOCP00000006466	zf-C2H2	PF00096.26	5.1e-50	2	9
ENSLOCP00000006466	zf-C2H2	PF00096.26	5.1e-50	3	9
ENSLOCP00000006466	zf-C2H2	PF00096.26	5.1e-50	4	9
ENSLOCP00000006466	zf-C2H2	PF00096.26	5.1e-50	5	9
ENSLOCP00000006466	zf-C2H2	PF00096.26	5.1e-50	6	9
ENSLOCP00000006466	zf-C2H2	PF00096.26	5.1e-50	7	9
ENSLOCP00000006466	zf-C2H2	PF00096.26	5.1e-50	8	9
ENSLOCP00000006466	zf-C2H2	PF00096.26	5.1e-50	9	9
ENSLOCP00000006441	zf-C2H2	PF00096.26	2.6e-49	1	9
ENSLOCP00000006441	zf-C2H2	PF00096.26	2.6e-49	2	9
ENSLOCP00000006441	zf-C2H2	PF00096.26	2.6e-49	3	9
ENSLOCP00000006441	zf-C2H2	PF00096.26	2.6e-49	4	9
ENSLOCP00000006441	zf-C2H2	PF00096.26	2.6e-49	5	9
ENSLOCP00000006441	zf-C2H2	PF00096.26	2.6e-49	6	9
ENSLOCP00000006441	zf-C2H2	PF00096.26	2.6e-49	7	9
ENSLOCP00000006441	zf-C2H2	PF00096.26	2.6e-49	8	9
ENSLOCP00000006441	zf-C2H2	PF00096.26	2.6e-49	9	9
ENSLOCP00000006466	zf-met	PF12874.7	9.2e-06	1	1
ENSLOCP00000006441	zf-met	PF12874.7	3.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000006474	-	8322	-	ENSLOCP00000006466	1146 (aa)	-	W5MDK7
ENSLOCT00000006449	-	8859	XM_006641959	ENSLOCP00000006441	1325 (aa)	XP_015192701	W5MDI2

Gene Model

Click here to download ENSLOCG00000005336's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000005336's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000005336	si:ch211-263k4.2	56	46.429	ENSLOCG00000003926	znf236	68	46.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000005336	si:ch211-263k4.2	100	79.897	ENSAMXG00000014024	si:ch211-263k4.2	100	78.951	Astyanax_mexicanus
ENSLOCG00000005336	si:ch211-263k4.2	90	77.656	ENSDARG00000078324	si:ch211-263k4.2	100	80.790	Danio_rerio
ENSLOCG00000005336	si:ch211-263k4.2	100	78.197	ENSIPUG00000020607	prdm16	100	76.493	Ictalurus_punctatus
ENSLOCG00000005336	si:ch211-263k4.2	91	81.002	ENSPKIG00000013811	si:ch211-263k4.2	99	77.750	Paramormyrops_kingsleyae
ENSLOCG00000005336	si:ch211-263k4.2	91	80.431	ENSPNAG00000027070	si:ch211-263k4.2	99	79.676	Pygocentrus_nattereri
ENSLOCG00000005336	si:ch211-263k4.2	91	75.547	ENSSFOG00015010518	si:ch211-263k4.2	100	73.036	Scleropages_formosus