EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000005409 (Gene tree)
Gene ID: 102686855
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 23158 bases
Position: chrLG22:8454865-8478022
Accession: 102686855
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000006539	RRM_4	PF10598.9	2.6e-48	1	1
ENSLOCP00000006539	U5_2-snRNA_bdg	PF10597.9	2.5e-72	1	1
ENSLOCP00000006539	PRO8NT	PF08082.11	1.8e-87	1	1
ENSLOCP00000006539	U6-snRNA_bdg	PF10596.9	1.2e-89	1	1
ENSLOCP00000006539	PROCN	PF08083.11	3.3e-236	1	1
ENSLOCP00000006539	PRP8_domainIV	PF12134.8	2.9e-130	1	1
ENSLOCP00000006539	PROCT	PF08084.11	1.9e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000006547	-	7299	XM_006641065	ENSLOCP00000006539	2338 (aa)	XP_015223244	W5MDT0

Gene Model

Click here to download ENSLOCG00000005409's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000005409's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000005409	prpf8	99	97.731	ENSG00000174231	PRPF8	99	97.731	Homo_sapiens
ENSLOCG00000005409	prpf8	99	98.632	ENSAPOG00000010079	prpf8	99	98.632	Acanthochromis_polyacanthus
ENSLOCG00000005409	prpf8	99	97.731	ENSAMEG00000007940	PRPF8	99	97.731	Ailuropoda_melanoleuca
ENSLOCG00000005409	prpf8	99	96.520	ENSACIG00000018280	prpf8	99	96.520	Amphilophus_citrinellus
ENSLOCG00000005409	prpf8	99	98.589	ENSAOCG00000010725	prpf8	99	98.589	Amphiprion_ocellaris
ENSLOCG00000005409	prpf8	99	98.589	ENSAPEG00000014397	prpf8	99	98.589	Amphiprion_percula
ENSLOCG00000005409	prpf8	99	97.820	ENSATEG00000010062	prpf8	99	97.820	Anabas_testudineus
ENSLOCG00000005409	prpf8	96	98.355	ENSAPLG00000010357	PRPF8	100	98.355	Anas_platyrhynchos
ENSLOCG00000005409	prpf8	83	95.940	ENSACAG00000014784	PRPF8	100	95.940	Anolis_carolinensis
ENSLOCG00000005409	prpf8	99	97.731	ENSANAG00000032629	PRPF8	99	97.731	Aotus_nancymaae
ENSLOCG00000005409	prpf8	99	99.045	ENSACLG00000020858	prpf8	99	99.045	Astatotilapia_calliptera
ENSLOCG00000005409	prpf8	99	98.672	ENSAMXG00000020291	prpf8	99	98.672	Astyanax_mexicanus
ENSLOCG00000005409	prpf8	99	97.731	ENSBTAG00000011488	PRPF8	99	97.731	Bos_taurus
ENSLOCG00000005409	prpf8	99	86.586	WBGene00004187	prp-8	99	86.500	Caenorhabditis_elegans
ENSLOCG00000005409	prpf8	99	97.731	ENSCJAG00000001911	PRPF8	99	97.731	Callithrix_jacchus
ENSLOCG00000005409	prpf8	99	97.731	ENSCAFG00000019221	PRPF8	99	97.731	Canis_familiaris
ENSLOCG00000005409	prpf8	96	98.260	ENSCAFG00020009943	PRPF8	100	98.260	Canis_lupus_dingo
ENSLOCG00000005409	prpf8	99	97.731	ENSCHIG00000017499	PRPF8	99	97.731	Capra_hircus
ENSLOCG00000005409	prpf8	99	97.731	ENSTSYG00000014120	PRPF8	99	97.731	Carlito_syrichta
ENSLOCG00000005409	prpf8	96	96.037	ENSCAPG00000009459	PRPF8	99	96.037	Cavia_aperea
ENSLOCG00000005409	prpf8	99	97.731	ENSCPOG00000010379	PRPF8	99	97.731	Cavia_porcellus
ENSLOCG00000005409	prpf8	99	97.731	ENSCCAG00000031983	-	99	97.731	Cebus_capucinus
ENSLOCG00000005409	prpf8	99	97.731	ENSCATG00000038595	PRPF8	99	97.731	Cercocebus_atys
ENSLOCG00000005409	prpf8	99	97.731	ENSCLAG00000004388	PRPF8	99	97.731	Chinchilla_lanigera
ENSLOCG00000005409	prpf8	99	97.731	ENSCSAG00000013929	PRPF8	99	97.731	Chlorocebus_sabaeus
ENSLOCG00000005409	prpf8	81	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSLOCG00000005409	prpf8	99	97.902	ENSCPBG00000020409	PRPF8	99	97.902	Chrysemys_picta_bellii
ENSLOCG00000005409	prpf8	98	91.413	ENSCSAVG00000007825	-	100	91.284	Ciona_savignyi
ENSLOCG00000005409	prpf8	99	97.731	ENSCANG00000043088	PRPF8	99	97.731	Colobus_angolensis_palliatus
ENSLOCG00000005409	prpf8	74	97.303	ENSCGRG00000005129	Prpf8	100	99.016	Cricetulus_griseus_crigri
ENSLOCG00000005409	prpf8	99	98.547	ENSCSEG00000007905	prpf8	99	98.547	Cynoglossus_semilaevis
ENSLOCG00000005409	prpf8	99	98.294	ENSDARG00000026180	prpf8	99	98.294	Danio_rerio
ENSLOCG00000005409	prpf8	93	97.883	ENSDNOG00000018471	PRPF8	99	97.883	Dasypus_novemcinctus
ENSLOCG00000005409	prpf8	83	96.525	ENSDORG00000006185	Prpf8	96	96.525	Dipodomys_ordii
ENSLOCG00000005409	prpf8	99	91.577	FBgn0033688	Prp8	97	91.362	Drosophila_melanogaster
ENSLOCG00000005409	prpf8	99	92.423	ENSETEG00000017592	PRPF8	99	92.423	Echinops_telfairi
ENSLOCG00000005409	prpf8	99	93.059	ENSEBUG00000006548	prpf8	99	93.059	Eptatretus_burgeri
ENSLOCG00000005409	prpf8	99	97.731	ENSEASG00005009514	PRPF8	99	98.720	Equus_asinus_asinus
ENSLOCG00000005409	prpf8	97	98.286	ENSECAG00000021318	PRPF8	100	98.286	Equus_caballus
ENSLOCG00000005409	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSLOCG00000005409	prpf8	98	97.466	ENSELUG00000007120	prpf8	99	97.466	Esox_lucius
ENSLOCG00000005409	prpf8	99	97.731	ENSFCAG00000006297	PRPF8	99	97.731	Felis_catus
ENSLOCG00000005409	prpf8	99	97.988	ENSFALG00000006628	PRPF8	99	97.988	Ficedula_albicollis
ENSLOCG00000005409	prpf8	99	97.731	ENSFDAG00000004711	PRPF8	99	97.731	Fukomys_damarensis
ENSLOCG00000005409	prpf8	99	97.994	ENSFHEG00000021084	prpf8	99	97.994	Fundulus_heteroclitus
ENSLOCG00000005409	prpf8	99	96.364	ENSGMOG00000002028	prpf8	99	96.364	Gadus_morhua
ENSLOCG00000005409	prpf8	99	98.031	ENSGALG00000002943	PRPF8	99	98.031	Gallus_gallus
ENSLOCG00000005409	prpf8	99	98.200	ENSGAFG00000010337	prpf8	99	98.200	Gambusia_affinis
ENSLOCG00000005409	prpf8	100	98.082	ENSGACG00000008504	prpf8	100	98.082	Gasterosteus_aculeatus
ENSLOCG00000005409	prpf8	99	97.902	ENSGAGG00000008350	PRPF8	99	97.902	Gopherus_agassizii
ENSLOCG00000005409	prpf8	99	97.731	ENSGGOG00000005516	PRPF8	99	97.731	Gorilla_gorilla
ENSLOCG00000005409	prpf8	99	98.544	ENSHBUG00000016192	prpf8	99	98.544	Haplochromis_burtoni
ENSLOCG00000005409	prpf8	99	97.731	ENSHGLG00000012029	PRPF8	99	97.731	Heterocephalus_glaber_female
ENSLOCG00000005409	prpf8	99	97.731	ENSHGLG00100016494	PRPF8	99	97.731	Heterocephalus_glaber_male
ENSLOCG00000005409	prpf8	99	98.462	ENSHCOG00000016414	prpf8	99	98.462	Hippocampus_comes
ENSLOCG00000005409	prpf8	99	98.418	ENSIPUG00000023230	prpf8	99	98.418	Ictalurus_punctatus
ENSLOCG00000005409	prpf8	99	97.731	ENSSTOG00000005128	PRPF8	99	97.731	Ictidomys_tridecemlineatus
ENSLOCG00000005409	prpf8	99	95.591	ENSJJAG00000021159	Prpf8	99	95.591	Jaculus_jaculus
ENSLOCG00000005409	prpf8	99	98.882	ENSKMAG00000016118	prpf8	99	98.882	Kryptolebias_marmoratus
ENSLOCG00000005409	prpf8	99	98.418	ENSLBEG00000026903	prpf8	99	98.418	Labrus_bergylta
ENSLOCG00000005409	prpf8	95	95.532	ENSLACG00000010479	PRPF8	99	98.213	Latimeria_chalumnae
ENSLOCG00000005409	prpf8	99	97.731	ENSLAFG00000015445	PRPF8	99	97.731	Loxodonta_africana
ENSLOCG00000005409	prpf8	99	97.731	ENSMFAG00000039995	PRPF8	99	97.731	Macaca_fascicularis
ENSLOCG00000005409	prpf8	99	97.731	ENSMMUG00000004820	PRPF8	99	97.731	Macaca_mulatta
ENSLOCG00000005409	prpf8	99	97.731	ENSMNEG00000035713	PRPF8	99	97.731	Macaca_nemestrina
ENSLOCG00000005409	prpf8	99	97.731	ENSMLEG00000037937	PRPF8	99	97.731	Mandrillus_leucophaeus
ENSLOCG00000005409	prpf8	99	98.418	ENSMAMG00000008919	prpf8	99	98.418	Mastacembelus_armatus
ENSLOCG00000005409	prpf8	99	98.043	ENSMZEG00005015073	prpf8	99	98.043	Maylandia_zebra
ENSLOCG00000005409	prpf8	99	98.031	ENSMGAG00000004769	PRPF8	99	98.031	Meleagris_gallopavo
ENSLOCG00000005409	prpf8	99	97.731	ENSMICG00000010320	PRPF8	99	97.731	Microcebus_murinus
ENSLOCG00000005409	prpf8	99	97.731	ENSMOCG00000016838	Prpf8	99	97.731	Microtus_ochrogaster
ENSLOCG00000005409	prpf8	99	98.076	ENSMMOG00000011887	prpf8	99	98.076	Mola_mola
ENSLOCG00000005409	prpf8	99	97.819	ENSMODG00000010480	PRPF8	99	97.819	Monodelphis_domestica
ENSLOCG00000005409	prpf8	97	98.172	ENSMALG00000003558	prpf8	99	98.172	Monopterus_albus
ENSLOCG00000005409	prpf8	99	97.688	MGP_CAROLIEiJ_G0016740	Prpf8	99	97.688	Mus_caroli
ENSLOCG00000005409	prpf8	99	97.688	ENSMUSG00000020850	Prpf8	99	97.688	Mus_musculus
ENSLOCG00000005409	prpf8	99	97.646	MGP_PahariEiJ_G0017877	Prpf8	99	97.646	Mus_pahari
ENSLOCG00000005409	prpf8	99	97.688	MGP_SPRETEiJ_G0017583	Prpf8	99	97.688	Mus_spretus
ENSLOCG00000005409	prpf8	99	97.731	ENSMPUG00000013227	PRPF8	99	97.731	Mustela_putorius_furo
ENSLOCG00000005409	prpf8	99	97.606	ENSMLUG00000002666	PRPF8	99	97.606	Myotis_lucifugus
ENSLOCG00000005409	prpf8	99	95.976	ENSNGAG00000005305	Prpf8	99	95.976	Nannospalax_galili
ENSLOCG00000005409	prpf8	99	98.086	ENSNBRG00000013127	prpf8	99	98.086	Neolamprologus_brichardi
ENSLOCG00000005409	prpf8	97	96.700	ENSNLEG00000000897	PRPF8	98	96.700	Nomascus_leucogenys
ENSLOCG00000005409	prpf8	98	96.481	ENSMEUG00000015999	PRPF8	100	96.481	Notamacropus_eugenii
ENSLOCG00000005409	prpf8	99	96.233	ENSOPRG00000003102	PRPF8	99	96.222	Ochotona_princeps
ENSLOCG00000005409	prpf8	99	97.731	ENSODEG00000008468	PRPF8	99	97.731	Octodon_degus
ENSLOCG00000005409	prpf8	99	98.043	ENSONIG00000008153	prpf8	99	98.043	Oreochromis_niloticus
ENSLOCG00000005409	prpf8	82	99.066	ENSOANG00000004250	PRPF8	97	99.066	Ornithorhynchus_anatinus
ENSLOCG00000005409	prpf8	99	97.731	ENSOCUG00000000081	PRPF8	99	97.731	Oryctolagus_cuniculus
ENSLOCG00000005409	prpf8	99	98.540	ENSORLG00000008036	prpf8	99	98.540	Oryzias_latipes
ENSLOCG00000005409	prpf8	99	98.497	ENSORLG00020021070	prpf8	99	98.497	Oryzias_latipes_hni
ENSLOCG00000005409	prpf8	99	98.540	ENSORLG00015002340	prpf8	99	98.540	Oryzias_latipes_hsok
ENSLOCG00000005409	prpf8	99	96.907	ENSOMEG00000016866	prpf8	99	96.907	Oryzias_melastigma
ENSLOCG00000005409	prpf8	99	97.606	ENSOARG00000013312	PRPF8	99	97.606	Ovis_aries
ENSLOCG00000005409	prpf8	99	97.731	ENSPPAG00000042753	PRPF8	99	97.731	Pan_paniscus
ENSLOCG00000005409	prpf8	99	97.731	ENSPPRG00000008746	PRPF8	99	97.731	Panthera_pardus
ENSLOCG00000005409	prpf8	99	97.646	ENSPTIG00000019200	PRPF8	99	97.646	Panthera_tigris_altaica
ENSLOCG00000005409	prpf8	99	97.731	ENSPTRG00000039576	PRPF8	99	97.731	Pan_troglodytes
ENSLOCG00000005409	prpf8	99	98.264	ENSPANG00000024607	PRPF8	98	98.264	Papio_anubis
ENSLOCG00000005409	prpf8	99	98.466	ENSPKIG00000011201	prpf8	99	98.466	Paramormyrops_kingsleyae
ENSLOCG00000005409	prpf8	99	97.860	ENSPSIG00000013393	PRPF8	99	97.860	Pelodiscus_sinensis
ENSLOCG00000005409	prpf8	99	97.731	ENSPEMG00000021699	Prpf8	99	97.731	Peromyscus_maniculatus_bairdii
ENSLOCG00000005409	prpf8	96	93.767	ENSPMAG00000005438	prpf8	100	93.678	Petromyzon_marinus
ENSLOCG00000005409	prpf8	99	97.819	ENSPCIG00000022603	PRPF8	100	98.260	Phascolarctos_cinereus
ENSLOCG00000005409	prpf8	99	97.541	ENSPFOG00000007005	prpf8	99	97.541	Poecilia_formosa
ENSLOCG00000005409	prpf8	99	97.088	ENSPLAG00000020777	prpf8	99	97.088	Poecilia_latipinna
ENSLOCG00000005409	prpf8	99	97.541	ENSPMEG00000004051	prpf8	99	97.541	Poecilia_mexicana
ENSLOCG00000005409	prpf8	99	98.544	ENSPREG00000021902	prpf8	99	98.544	Poecilia_reticulata
ENSLOCG00000005409	prpf8	99	97.731	ENSPPYG00000007777	PRPF8	99	97.731	Pongo_abelii
ENSLOCG00000005409	prpf8	90	97.030	ENSPCAG00000008938	PRPF8	90	97.030	Procavia_capensis
ENSLOCG00000005409	prpf8	99	97.731	ENSPCOG00000015182	PRPF8	99	97.731	Propithecus_coquereli
ENSLOCG00000005409	prpf8	93	98.504	ENSPVAG00000002134	PRPF8	93	98.504	Pteropus_vampyrus
ENSLOCG00000005409	prpf8	99	98.544	ENSPNYG00000016356	prpf8	99	98.544	Pundamilia_nyererei
ENSLOCG00000005409	prpf8	99	98.546	ENSPNAG00000009247	prpf8	99	98.546	Pygocentrus_nattereri
ENSLOCG00000005409	prpf8	99	97.688	ENSRNOG00000003495	Prpf8	99	97.688	Rattus_norvegicus
ENSLOCG00000005409	prpf8	99	97.731	ENSRBIG00000031219	PRPF8	100	97.814	Rhinopithecus_bieti
ENSLOCG00000005409	prpf8	99	97.731	ENSRROG00000038014	PRPF8	100	97.814	Rhinopithecus_roxellana
ENSLOCG00000005409	prpf8	98	62.532	YHR165C	PRP8	95	62.532	Saccharomyces_cerevisiae
ENSLOCG00000005409	prpf8	99	97.731	ENSSBOG00000029717	PRPF8	99	97.731	Saimiri_boliviensis_boliviensis
ENSLOCG00000005409	prpf8	99	97.776	ENSSHAG00000006167	PRPF8	99	97.776	Sarcophilus_harrisii
ENSLOCG00000005409	prpf8	99	98.464	ENSSFOG00015013905	prpf8	99	98.464	Scleropages_formosus
ENSLOCG00000005409	prpf8	99	98.504	ENSSMAG00000017736	prpf8	99	98.504	Scophthalmus_maximus
ENSLOCG00000005409	prpf8	99	98.589	ENSSDUG00000003029	prpf8	99	98.589	Seriola_dumerili
ENSLOCG00000005409	prpf8	68	99.562	ENSSLDG00000017096	prpf8	100	99.562	Seriola_lalandi_dorsalis
ENSLOCG00000005409	prpf8	87	94.412	ENSSARG00000002892	PRPF8	87	94.412	Sorex_araneus
ENSLOCG00000005409	prpf8	99	97.731	ENSSPUG00000007463	PRPF8	99	97.731	Sphenodon_punctatus
ENSLOCG00000005409	prpf8	99	98.033	ENSSPAG00000015639	prpf8	99	98.033	Stegastes_partitus
ENSLOCG00000005409	prpf8	99	97.731	ENSSSCG00000017817	PRPF8	99	97.731	Sus_scrofa
ENSLOCG00000005409	prpf8	99	97.988	ENSTGUG00000005648	-	99	97.988	Taeniopygia_guttata
ENSLOCG00000005409	prpf8	52	98.780	ENSTGUG00000015597	-	95	98.780	Taeniopygia_guttata
ENSLOCG00000005409	prpf8	99	98.290	ENSTRUG00000015906	prpf8	99	98.290	Takifugu_rubripes
ENSLOCG00000005409	prpf8	94	99.343	ENSTNIG00000003460	prpf8	99	99.343	Tetraodon_nigroviridis
ENSLOCG00000005409	prpf8	89	98.776	ENSTBEG00000006431	PRPF8	89	98.776	Tupaia_belangeri
ENSLOCG00000005409	prpf8	99	97.217	ENSTTRG00000006869	PRPF8	99	97.217	Tursiops_truncatus
ENSLOCG00000005409	prpf8	54	96.743	ENSUAMG00000015644	-	95	96.743	Ursus_americanus
ENSLOCG00000005409	prpf8	99	97.474	ENSUMAG00000009385	PRPF8	99	97.474	Ursus_maritimus
ENSLOCG00000005409	prpf8	71	98.621	ENSVPAG00000006063	-	71	98.621	Vicugna_pacos
ENSLOCG00000005409	prpf8	99	97.731	ENSVVUG00000021695	PRPF8	99	97.731	Vulpes_vulpes
ENSLOCG00000005409	prpf8	99	97.818	ENSXETG00000022259	prpf8	99	97.818	Xenopus_tropicalis
ENSLOCG00000005409	prpf8	99	98.164	ENSXCOG00000012775	prpf8	99	98.164	Xiphophorus_couchianus
ENSLOCG00000005409	prpf8	99	98.207	ENSXMAG00000008505	prpf8	99	98.207	Xiphophorus_maculatus