EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000005429 (Gene tree)
Gene ID: 102684684
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 7214 bases
Position: chrLG21:13658561-13665774
Accession: 102684684
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000006556	zf-C2H2	PF00096.26	2.5e-12	1	2
ENSLOCP00000006556	zf-C2H2	PF00096.26	2.5e-12	2	2
ENSLOCP00000006545	zf-C2H2	PF00096.26	2.9e-12	1	2
ENSLOCP00000006545	zf-C2H2	PF00096.26	2.9e-12	2	2
ENSLOCP00000006556	zf-met	PF12874.7	4.5e-07	1	1
ENSLOCP00000006545	zf-met	PF12874.7	5.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000006564	-	1657	-	ENSLOCP00000006556	364 (aa)	-	W5MDU7
ENSLOCT00000006553	-	2948	XM_006640707	ENSLOCP00000006545	380 (aa)	XP_006640770	W5MDT6

Gene Model

Click here to download ENSLOCG00000005429's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000005429's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000005429	prdm12b	73	40.789	ENSLOCG00000009778	prdm5	93	40.789

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000005429	prdm12b	93	87.021	ENSG00000130711	PRDM12	99	80.914	Homo_sapiens
ENSLOCG00000005429	prdm12b	100	84.115	ENSAPOG00000016051	prdm12b	100	83.594	Acanthochromis_polyacanthus
ENSLOCG00000005429	prdm12b	100	69.211	ENSAPOG00000018234	-	100	68.158	Acanthochromis_polyacanthus
ENSLOCG00000005429	prdm12b	89	85.106	ENSAMEG00000016234	PRDM12	99	85.231	Ailuropoda_melanoleuca
ENSLOCG00000005429	prdm12b	100	78.788	ENSACIG00000005193	-	100	80.157	Amphilophus_citrinellus
ENSLOCG00000005429	prdm12b	100	85.302	ENSACIG00000019578	prdm12b	100	85.039	Amphilophus_citrinellus
ENSLOCG00000005429	prdm12b	100	83.594	ENSAOCG00000015040	prdm12b	100	83.073	Amphiprion_ocellaris
ENSLOCG00000005429	prdm12b	99	74.219	ENSAPEG00000022849	-	99	76.302	Amphiprion_percula
ENSLOCG00000005429	prdm12b	100	82.552	ENSAPEG00000015092	prdm12b	100	82.292	Amphiprion_percula
ENSLOCG00000005429	prdm12b	100	82.687	ENSATEG00000014595	-	100	82.429	Anabas_testudineus
ENSLOCG00000005429	prdm12b	94	86.297	ENSANAG00000020616	PRDM12	98	86.431	Aotus_nancymaae
ENSLOCG00000005429	prdm12b	99	84.384	ENSACLG00000011876	prdm12b	100	84.384	Astatotilapia_calliptera
ENSLOCG00000005429	prdm12b	99	78.173	ENSACLG00000007631	-	100	78.934	Astatotilapia_calliptera
ENSLOCG00000005429	prdm12b	99	87.027	ENSAMXG00000033665	prdm12b	100	87.027	Astyanax_mexicanus
ENSLOCG00000005429	prdm12b	99	83.880	ENSAMXG00000008540	PRDM12	100	82.645	Astyanax_mexicanus
ENSLOCG00000005429	prdm12b	93	86.726	ENSBTAG00000023797	PRDM12	99	82.787	Bos_taurus
ENSLOCG00000005429	prdm12b	93	86.726	ENSCJAG00000020540	PRDM12	99	82.466	Callithrix_jacchus
ENSLOCG00000005429	prdm12b	82	86.532	ENSCAFG00000023076	PRDM12	99	80.734	Canis_familiaris
ENSLOCG00000005429	prdm12b	93	86.726	ENSCAFG00020024046	PRDM12	99	81.572	Canis_lupus_dingo
ENSLOCG00000005429	prdm12b	93	86.726	ENSCHIG00000025005	PRDM12	99	82.561	Capra_hircus
ENSLOCG00000005429	prdm12b	86	87.898	ENSCPOG00000005901	PRDM12	95	87.580	Cavia_porcellus
ENSLOCG00000005429	prdm12b	93	86.726	ENSCCAG00000037485	PRDM12	99	81.522	Cebus_capucinus
ENSLOCG00000005429	prdm12b	93	86.726	ENSCATG00000020327	PRDM12	99	81.522	Cercocebus_atys
ENSLOCG00000005429	prdm12b	93	86.431	ENSCLAG00000005499	PRDM12	91	86.136	Chinchilla_lanigera
ENSLOCG00000005429	prdm12b	93	86.726	ENSCSAG00000014756	PRDM12	99	81.301	Chlorocebus_sabaeus
ENSLOCG00000005429	prdm12b	99	87.328	ENSCPBG00000022628	PRDM12	99	86.777	Chrysemys_picta_bellii
ENSLOCG00000005429	prdm12b	93	86.431	ENSCGRG00001015005	Prdm12	99	80.863	Cricetulus_griseus_chok1gshd
ENSLOCG00000005429	prdm12b	100	81.579	ENSCVAG00000017166	prdm12b	100	82.210	Cyprinodon_variegatus
ENSLOCG00000005429	prdm12b	100	79.847	ENSCVAG00000000944	-	100	79.592	Cyprinodon_variegatus
ENSLOCG00000005429	prdm12b	99	91.257	ENSDARG00000007430	prdm12b	100	91.257	Danio_rerio
ENSLOCG00000005429	prdm12b	93	86.176	ENSDNOG00000042302	PRDM12	99	82.016	Dasypus_novemcinctus
ENSLOCG00000005429	prdm12b	91	64.225	ENSEBUG00000016780	prdm12b	79	64.507	Eptatretus_burgeri
ENSLOCG00000005429	prdm12b	94	86.006	ENSEASG00005008472	PRDM12	99	82.289	Equus_asinus_asinus
ENSLOCG00000005429	prdm12b	94	86.297	ENSECAG00000005933	PRDM12	99	82.561	Equus_caballus
ENSLOCG00000005429	prdm12b	100	82.677	ENSELUG00000013674	PRDM12	100	82.895	Esox_lucius
ENSLOCG00000005429	prdm12b	99	89.757	ENSELUG00000009905	prdm12b	100	89.218	Esox_lucius
ENSLOCG00000005429	prdm12b	93	86.726	ENSFCAG00000043086	PRDM12	99	81.793	Felis_catus
ENSLOCG00000005429	prdm12b	99	87.879	ENSFALG00000001445	PRDM12	89	87.603	Ficedula_albicollis
ENSLOCG00000005429	prdm12b	99	79.124	ENSFHEG00000007746	-	100	78.866	Fundulus_heteroclitus
ENSLOCG00000005429	prdm12b	100	81.201	ENSFHEG00000003944	prdm12b	100	81.818	Fundulus_heteroclitus
ENSLOCG00000005429	prdm12b	99	82.796	ENSGMOG00000011797	prdm12b	100	81.989	Gadus_morhua
ENSLOCG00000005429	prdm12b	99	87.879	ENSGALG00000003895	PRDM12	99	87.603	Gallus_gallus
ENSLOCG00000005429	prdm12b	99	80.902	ENSGAFG00000010827	prdm12b	99	80.371	Gambusia_affinis
ENSLOCG00000005429	prdm12b	99	82.796	ENSGACG00000016713	prdm12b	99	81.132	Gasterosteus_aculeatus
ENSLOCG00000005429	prdm12b	99	87.328	ENSGAGG00000014083	PRDM12	99	86.777	Gopherus_agassizii
ENSLOCG00000005429	prdm12b	93	86.726	ENSGGOG00000010568	PRDM12	99	80.863	Gorilla_gorilla
ENSLOCG00000005429	prdm12b	100	78.228	ENSHBUG00000022537	-	93	79.747	Haplochromis_burtoni
ENSLOCG00000005429	prdm12b	100	83.770	ENSHBUG00000022878	prdm12b	100	84.043	Haplochromis_burtoni
ENSLOCG00000005429	prdm12b	90	88.037	ENSHGLG00000013939	PRDM12	99	80.601	Heterocephalus_glaber_female
ENSLOCG00000005429	prdm12b	99	74.462	ENSHCOG00000021167	-	100	73.190	Hippocampus_comes
ENSLOCG00000005429	prdm12b	90	82.370	ENSHCOG00000003663	prdm12b	100	75.063	Hippocampus_comes
ENSLOCG00000005429	prdm12b	99	89.130	ENSIPUG00000017053	prdm12b	100	87.500	Ictalurus_punctatus
ENSLOCG00000005429	prdm12b	99	80.874	ENSIPUG00000019544	PRDM12	100	80.000	Ictalurus_punctatus
ENSLOCG00000005429	prdm12b	98	84.225	ENSSTOG00000005986	PRDM12	87	86.136	Ictidomys_tridecemlineatus
ENSLOCG00000005429	prdm12b	90	88.344	ENSJJAG00000005424	Prdm12	98	88.037	Jaculus_jaculus
ENSLOCG00000005429	prdm12b	99	79.404	ENSKMAG00000021205	-	99	78.689	Kryptolebias_marmoratus
ENSLOCG00000005429	prdm12b	100	78.713	ENSKMAG00000016921	prdm12b	100	78.960	Kryptolebias_marmoratus
ENSLOCG00000005429	prdm12b	100	82.216	ENSLBEG00000007776	-	100	82.000	Labrus_bergylta
ENSLOCG00000005429	prdm12b	100	80.362	ENSLBEG00000017769	prdm12b	100	80.159	Labrus_bergylta
ENSLOCG00000005429	prdm12b	100	88.736	ENSLACG00000017560	PRDM12	100	87.912	Latimeria_chalumnae
ENSLOCG00000005429	prdm12b	93	84.593	ENSLAFG00000006979	PRDM12	91	84.302	Loxodonta_africana
ENSLOCG00000005429	prdm12b	99	80.914	ENSMFAG00000040322	PRDM12	99	80.914	Macaca_fascicularis
ENSLOCG00000005429	prdm12b	93	86.726	ENSMNEG00000037234	PRDM12	99	81.522	Macaca_nemestrina
ENSLOCG00000005429	prdm12b	99	77.436	ENSMAMG00000018988	-	100	78.974	Mastacembelus_armatus
ENSLOCG00000005429	prdm12b	100	82.677	ENSMAMG00000013212	prdm12b	100	82.940	Mastacembelus_armatus
ENSLOCG00000005429	prdm12b	99	77.778	ENSMZEG00005000415	PRDM12	100	78.535	Maylandia_zebra
ENSLOCG00000005429	prdm12b	98	87.675	ENSMGAG00000005438	PRDM12	98	87.395	Meleagris_gallopavo
ENSLOCG00000005429	prdm12b	99	81.283	ENSMAUG00000013040	Prdm12	99	81.351	Mesocricetus_auratus
ENSLOCG00000005429	prdm12b	94	86.297	ENSMICG00000015480	PRDM12	99	82.289	Microcebus_murinus
ENSLOCG00000005429	prdm12b	96	85.345	ENSMOCG00000021026	Prdm12	91	86.431	Microtus_ochrogaster
ENSLOCG00000005429	prdm12b	99	87.912	ENSMODG00000012108	PRDM12	99	86.501	Monodelphis_domestica
ENSLOCG00000005429	prdm12b	99	70.430	ENSMALG00000021901	prdm12b	99	69.272	Monopterus_albus
ENSLOCG00000005429	prdm12b	93	86.726	MGP_CAROLIEiJ_G0023414	Prdm12	99	81.622	Mus_caroli
ENSLOCG00000005429	prdm12b	93	86.726	ENSMUSG00000079466	Prdm12	99	81.622	Mus_musculus
ENSLOCG00000005429	prdm12b	93	86.726	MGP_PahariEiJ_G0024871	Prdm12	99	81.622	Mus_pahari
ENSLOCG00000005429	prdm12b	93	86.726	MGP_SPRETEiJ_G0024331	Prdm12	99	81.622	Mus_spretus
ENSLOCG00000005429	prdm12b	90	88.037	ENSNGAG00000018480	Prdm12	99	80.992	Nannospalax_galili
ENSLOCG00000005429	prdm12b	100	84.293	ENSNBRG00000006727	prdm12b	100	84.293	Neolamprologus_brichardi
ENSLOCG00000005429	prdm12b	99	75.603	ENSNBRG00000024312	-	100	76.408	Neolamprologus_brichardi
ENSLOCG00000005429	prdm12b	99	79.121	ENSMEUG00000003828	PRDM12	99	77.686	Notamacropus_eugenii
ENSLOCG00000005429	prdm12b	90	88.037	ENSOPRG00000008680	PRDM12	98	87.730	Ochotona_princeps
ENSLOCG00000005429	prdm12b	97	84.463	ENSODEG00000016282	PRDM12	62	86.136	Octodon_degus
ENSLOCG00000005429	prdm12b	62	85.903	ENSOANG00000001043	PRDM12	100	85.463	Ornithorhynchus_anatinus
ENSLOCG00000005429	prdm12b	87	83.333	ENSOCUG00000008241	PRDM12	96	86.379	Oryctolagus_cuniculus
ENSLOCG00000005429	prdm12b	100	82.152	ENSORLG00000007114	prdm12b	99	81.627	Oryzias_latipes
ENSLOCG00000005429	prdm12b	100	77.834	ENSORLG00000017558	-	100	79.345	Oryzias_latipes
ENSLOCG00000005429	prdm12b	100	81.723	ENSORLG00020019565	prdm12b	99	81.201	Oryzias_latipes_hni
ENSLOCG00000005429	prdm12b	100	77.834	ENSORLG00020013167	-	100	79.597	Oryzias_latipes_hni
ENSLOCG00000005429	prdm12b	100	77.834	ENSORLG00015003435	-	100	79.345	Oryzias_latipes_hsok
ENSLOCG00000005429	prdm12b	100	81.152	ENSORLG00015007621	prdm12b	99	81.152	Oryzias_latipes_hsok
ENSLOCG00000005429	prdm12b	100	81.723	ENSOMEG00000004134	prdm12b	99	81.723	Oryzias_melastigma
ENSLOCG00000005429	prdm12b	100	79.487	ENSOMEG00000007762	-	100	79.744	Oryzias_melastigma
ENSLOCG00000005429	prdm12b	93	86.686	ENSOGAG00000007557	PRDM12	99	86.391	Otolemur_garnettii
ENSLOCG00000005429	prdm12b	79	86.806	ENSPPAG00000031506	-	99	85.034	Pan_paniscus
ENSLOCG00000005429	prdm12b	99	76.923	ENSPPRG00000023024	PRDM12	92	76.648	Panthera_pardus
ENSLOCG00000005429	prdm12b	93	87.021	ENSPTRG00000043324	-	99	81.132	Pan_troglodytes
ENSLOCG00000005429	prdm12b	93	87.021	ENSPTRG00000021475	PRDM12	99	81.132	Pan_troglodytes
ENSLOCG00000005429	prdm12b	93	86.726	ENSPANG00000025967	PRDM12	99	81.522	Papio_anubis
ENSLOCG00000005429	prdm12b	100	91.579	ENSPKIG00000007228	prdm12b	100	91.667	Paramormyrops_kingsleyae
ENSLOCG00000005429	prdm12b	96	80.165	ENSPKIG00000004305	PRDM12	97	83.383	Paramormyrops_kingsleyae
ENSLOCG00000005429	prdm12b	99	86.501	ENSPSIG00000006739	PRDM12	99	85.950	Pelodiscus_sinensis
ENSLOCG00000005429	prdm12b	99	81.132	ENSPMGG00000008867	prdm12b	99	81.671	Periophthalmus_magnuspinnatus
ENSLOCG00000005429	prdm12b	99	77.403	ENSPMGG00000002356	-	100	76.425	Periophthalmus_magnuspinnatus
ENSLOCG00000005429	prdm12b	95	84.046	ENSPEMG00000009969	Prdm12	89	88.037	Peromyscus_maniculatus_bairdii
ENSLOCG00000005429	prdm12b	99	87.912	ENSPCIG00000024119	PRDM12	99	86.501	Phascolarctos_cinereus
ENSLOCG00000005429	prdm12b	99	81.600	ENSPFOG00000019841	prdm12b	100	80.965	Poecilia_formosa
ENSLOCG00000005429	prdm12b	99	80.000	ENSPLAG00000016626	prdm12b	99	79.737	Poecilia_latipinna
ENSLOCG00000005429	prdm12b	97	79.515	ENSPMEG00000016698	prdm12b	100	79.245	Poecilia_mexicana
ENSLOCG00000005429	prdm12b	95	77.684	ENSPREG00000003211	-	94	76.620	Poecilia_reticulata
ENSLOCG00000005429	prdm12b	99	80.315	ENSPREG00000015073	prdm12b	99	79.790	Poecilia_reticulata
ENSLOCG00000005429	prdm12b	96	84.483	ENSPPYG00000019694	PRDM12	92	88.344	Pongo_abelii
ENSLOCG00000005429	prdm12b	93	86.726	ENSPCOG00000022255	PRDM12	99	81.132	Propithecus_coquereli
ENSLOCG00000005429	prdm12b	93	86.726	ENSPVAG00000001511	PRDM12	99	81.132	Pteropus_vampyrus
ENSLOCG00000005429	prdm12b	100	84.293	ENSPNYG00000009607	prdm12b	100	84.293	Pundamilia_nyererei
ENSLOCG00000005429	prdm12b	99	77.778	ENSPNYG00000013589	-	100	78.030	Pundamilia_nyererei
ENSLOCG00000005429	prdm12b	99	87.500	ENSPNAG00000024532	prdm12b	100	86.685	Pygocentrus_nattereri
ENSLOCG00000005429	prdm12b	99	79.893	ENSPNAG00000013396	PRDM12	100	78.552	Pygocentrus_nattereri
ENSLOCG00000005429	prdm12b	93	86.726	ENSRNOG00000009218	Prdm12	99	81.622	Rattus_norvegicus
ENSLOCG00000005429	prdm12b	87	88.365	ENSRBIG00000042712	PRDM12	88	87.267	Rhinopithecus_bieti
ENSLOCG00000005429	prdm12b	88	88.509	ENSRROG00000043554	PRDM12	99	88.199	Rhinopithecus_roxellana
ENSLOCG00000005429	prdm12b	99	87.397	ENSSHAG00000015972	PRDM12	99	85.989	Sarcophilus_harrisii
ENSLOCG00000005429	prdm12b	100	80.977	ENSSMAG00000003754	prdm12b	100	81.748	Scophthalmus_maximus
ENSLOCG00000005429	prdm12b	100	83.679	ENSSDUG00000019071	-	100	83.161	Seriola_dumerili
ENSLOCG00000005429	prdm12b	100	84.156	ENSSDUG00000023498	prdm12b	100	83.073	Seriola_dumerili
ENSLOCG00000005429	prdm12b	100	83.636	ENSSLDG00000009557	prdm12b	100	82.552	Seriola_lalandi_dorsalis
ENSLOCG00000005429	prdm12b	99	81.044	ENSSLDG00000013562	-	100	80.220	Seriola_lalandi_dorsalis
ENSLOCG00000005429	prdm12b	99	87.603	ENSSPUG00000013424	PRDM12	99	87.052	Sphenodon_punctatus
ENSLOCG00000005429	prdm12b	100	82.292	ENSSPAG00000018824	prdm12b	100	81.771	Stegastes_partitus
ENSLOCG00000005429	prdm12b	100	73.402	ENSSPAG00000022420	-	100	75.448	Stegastes_partitus
ENSLOCG00000005429	prdm12b	93	86.726	ENSSSCG00000005703	PRDM12	99	81.572	Sus_scrofa
ENSLOCG00000005429	prdm12b	99	79.459	ENSTRUG00000013239	-	100	79.784	Takifugu_rubripes
ENSLOCG00000005429	prdm12b	99	82.796	ENSTRUG00000018659	prdm12b	100	82.210	Takifugu_rubripes
ENSLOCG00000005429	prdm12b	100	76.423	ENSTNIG00000005859	-	100	75.405	Tetraodon_nigroviridis
ENSLOCG00000005429	prdm12b	99	81.989	ENSTNIG00000009020	prdm12b	99	81.671	Tetraodon_nigroviridis
ENSLOCG00000005429	prdm12b	93	86.726	ENSUAMG00000009653	PRDM12	92	86.431	Ursus_americanus
ENSLOCG00000005429	prdm12b	90	88.650	ENSVVUG00000027662	PRDM12	77	88.344	Vulpes_vulpes
ENSLOCG00000005429	prdm12b	99	82.133	ENSXCOG00000002836	prdm12b	99	82.133	Xiphophorus_couchianus
ENSLOCG00000005429	prdm12b	100	78.358	ENSXMAG00000028012	-	100	79.353	Xiphophorus_maculatus
ENSLOCG00000005429	prdm12b	99	82.133	ENSXMAG00000005537	prdm12b	100	82.133	Xiphophorus_maculatus