EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000005517 (Gene tree)
Gene ID: 102690347
Gene Symbol: tnrc6a
Alias: wu:fc10d10
Full Name: trinucleotide repeat containing 6A
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 114105 bases
Position: chrLG13:10523953-10638057
Accession: 102690347
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000006682	Ago_hook	PF10427.9	6.9e-12	1	1
ENSLOCP00000006665	Ago_hook	PF10427.9	3.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000006673	-	6414	-	ENSLOCP00000006665	2137 (aa)	XP_015215652	W5ME56
ENSLOCT00000006690	-	6012	XM_006637263	ENSLOCP00000006682	1969 (aa)	-	W5ME73

Gene Model

Click here to download ENSLOCG00000005517's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000005517's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000005517	tnrc6a	79	53.066	ENSLOCG00000013377	tnrc6c1	93	52.643

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000005517	tnrc6a	93	83.223	ENSG00000090905	TNRC6A	100	85.625	Homo_sapiens
ENSLOCG00000005517	tnrc6a	90	83.444	ENSAMEG00000009333	TNRC6A	100	83.444	Ailuropoda_melanoleuca
ENSLOCG00000005517	tnrc6a	90	85.022	ENSAPLG00000009978	TNRC6A	100	85.022	Anas_platyrhynchos
ENSLOCG00000005517	tnrc6a	92	64.449	ENSACAG00000011857	TNRC6A	99	67.511	Anolis_carolinensis
ENSLOCG00000005517	tnrc6a	93	83.223	ENSANAG00000025252	TNRC6A	99	85.461	Aotus_nancymaae
ENSLOCG00000005517	tnrc6a	86	75.200	ENSAMXG00000019919	tnrc6a	99	80.338	Astyanax_mexicanus
ENSLOCG00000005517	tnrc6a	93	83.002	ENSBTAG00000017999	TNRC6A	99	83.002	Bos_taurus
ENSLOCG00000005517	tnrc6a	93	83.223	ENSCJAG00000020677	TNRC6A	99	83.223	Callithrix_jacchus
ENSLOCG00000005517	tnrc6a	93	83.223	ENSCAFG00000017531	TNRC6A	100	83.223	Canis_familiaris
ENSLOCG00000005517	tnrc6a	90	79.249	ENSCAFG00020021160	TNRC6A	99	79.249	Canis_lupus_dingo
ENSLOCG00000005517	tnrc6a	93	82.561	ENSCHIG00000019448	TNRC6A	99	85.816	Capra_hircus
ENSLOCG00000005517	tnrc6a	93	83.002	ENSTSYG00000012711	TNRC6A	99	83.002	Carlito_syrichta
ENSLOCG00000005517	tnrc6a	93	82.781	ENSCPOG00000036684	TNRC6A	100	82.781	Cavia_porcellus
ENSLOCG00000005517	tnrc6a	93	83.223	ENSCCAG00000033664	TNRC6A	99	83.223	Cebus_capucinus
ENSLOCG00000005517	tnrc6a	92	83.223	ENSCATG00000019284	TNRC6A	99	83.223	Cercocebus_atys
ENSLOCG00000005517	tnrc6a	93	81.678	ENSCLAG00000010217	TNRC6A	99	81.678	Chinchilla_lanigera
ENSLOCG00000005517	tnrc6a	93	83.223	ENSCSAG00000006561	TNRC6A	99	83.223	Chlorocebus_sabaeus
ENSLOCG00000005517	tnrc6a	87	84.375	ENSCHOG00000009374	TNRC6A	89	84.615	Choloepus_hoffmanni
ENSLOCG00000005517	tnrc6a	85	85.210	ENSCPBG00000001881	TNRC6A	100	85.210	Chrysemys_picta_bellii
ENSLOCG00000005517	tnrc6a	93	83.223	ENSCANG00000041549	TNRC6A	99	83.223	Colobus_angolensis_palliatus
ENSLOCG00000005517	tnrc6a	93	82.561	ENSCGRG00001015021	Tnrc6a	99	82.561	Cricetulus_griseus_chok1gshd
ENSLOCG00000005517	tnrc6a	93	82.561	ENSCGRG00000013351	Tnrc6a	99	82.561	Cricetulus_griseus_crigri
ENSLOCG00000005517	tnrc6a	85	85.366	ENSDARG00000079688	tnrc6a	100	85.366	Danio_rerio
ENSLOCG00000005517	tnrc6a	90	82.159	ENSDNOG00000013989	TNRC6A	100	82.159	Dasypus_novemcinctus
ENSLOCG00000005517	tnrc6a	88	79.506	ENSETEG00000014658	TNRC6A	98	79.506	Echinops_telfairi
ENSLOCG00000005517	tnrc6a	93	82.781	ENSEASG00005017693	TNRC6A	99	82.781	Equus_asinus_asinus
ENSLOCG00000005517	tnrc6a	93	82.561	ENSECAG00000025056	TNRC6A	100	82.561	Equus_caballus
ENSLOCG00000005517	tnrc6a	90	69.316	ENSEEUG00000004530	TNRC6A	100	69.316	Erinaceus_europaeus
ENSLOCG00000005517	tnrc6a	93	83.223	ENSFCAG00000025236	TNRC6A	100	83.223	Felis_catus
ENSLOCG00000005517	tnrc6a	93	85.242	ENSFALG00000003757	TNRC6A	99	85.242	Ficedula_albicollis
ENSLOCG00000005517	tnrc6a	85	84.141	ENSGALG00000006068	TNRC6A	100	84.141	Gallus_gallus
ENSLOCG00000005517	tnrc6a	85	85.242	ENSGAGG00000023209	TNRC6A	100	85.242	Gopherus_agassizii
ENSLOCG00000005517	tnrc6a	92	83.223	ENSGGOG00000005137	TNRC6A	99	83.223	Gorilla_gorilla
ENSLOCG00000005517	tnrc6a	88	67.920	ENSHGLG00000007368	-	93	67.920	Heterocephalus_glaber_female
ENSLOCG00000005517	tnrc6a	92	79.470	ENSHGLG00000012474	-	99	79.470	Heterocephalus_glaber_female
ENSLOCG00000005517	tnrc6a	92	80.134	ENSHGLG00100012496	-	99	80.134	Heterocephalus_glaber_male
ENSLOCG00000005517	tnrc6a	93	83.444	ENSSTOG00000023394	TNRC6A	99	83.444	Ictidomys_tridecemlineatus
ENSLOCG00000005517	tnrc6a	90	85.714	ENSLACG00000006277	TNRC6A	99	85.714	Latimeria_chalumnae
ENSLOCG00000005517	tnrc6a	90	83.002	ENSLAFG00000004209	TNRC6A	100	83.002	Loxodonta_africana
ENSLOCG00000005517	tnrc6a	90	83.223	ENSMFAG00000003824	TNRC6A	99	83.223	Macaca_fascicularis
ENSLOCG00000005517	tnrc6a	93	83.223	ENSMMUG00000020428	TNRC6A	99	83.223	Macaca_mulatta
ENSLOCG00000005517	tnrc6a	93	83.223	ENSMNEG00000034854	TNRC6A	99	83.223	Macaca_nemestrina
ENSLOCG00000005517	tnrc6a	90	83.223	ENSMLEG00000042737	TNRC6A	97	83.223	Mandrillus_leucophaeus
ENSLOCG00000005517	tnrc6a	93	83.807	ENSMGAG00000006455	TNRC6A	99	83.807	Meleagris_gallopavo
ENSLOCG00000005517	tnrc6a	93	82.781	ENSMAUG00000012750	Tnrc6a	99	82.781	Mesocricetus_auratus
ENSLOCG00000005517	tnrc6a	93	83.223	ENSMICG00000030685	TNRC6A	99	83.223	Microcebus_murinus
ENSLOCG00000005517	tnrc6a	93	82.781	ENSMOCG00000000152	Tnrc6a	99	82.781	Microtus_ochrogaster
ENSLOCG00000005517	tnrc6a	94	79.332	ENSMODG00000016348	TNRC6A	99	80.167	Monodelphis_domestica
ENSLOCG00000005517	tnrc6a	92	83.002	MGP_CAROLIEiJ_G0030425	Tnrc6a	99	83.002	Mus_caroli
ENSLOCG00000005517	tnrc6a	93	83.002	ENSMUSG00000052707	Tnrc6a	99	83.002	Mus_musculus
ENSLOCG00000005517	tnrc6a	92	83.002	MGP_PahariEiJ_G0013635	Tnrc6a	99	83.002	Mus_pahari
ENSLOCG00000005517	tnrc6a	93	82.561	MGP_SPRETEiJ_G0031539	Tnrc6a	99	82.561	Mus_spretus
ENSLOCG00000005517	tnrc6a	88	80.278	ENSMPUG00000012324	TNRC6A	98	80.278	Mustela_putorius_furo
ENSLOCG00000005517	tnrc6a	90	83.223	ENSMLUG00000002701	TNRC6A	100	83.223	Myotis_lucifugus
ENSLOCG00000005517	tnrc6a	93	83.223	ENSNGAG00000020702	Tnrc6a	100	83.223	Nannospalax_galili
ENSLOCG00000005517	tnrc6a	90	79.167	ENSNLEG00000011851	TNRC6A	99	79.167	Nomascus_leucogenys
ENSLOCG00000005517	tnrc6a	71	84.768	ENSMEUG00000015959	-	74	84.768	Notamacropus_eugenii
ENSLOCG00000005517	tnrc6a	93	82.090	ENSOPRG00000005819	TNRC6A	96	82.090	Ochotona_princeps
ENSLOCG00000005517	tnrc6a	92	82.561	ENSODEG00000012802	TNRC6A	99	82.561	Octodon_degus
ENSLOCG00000005517	tnrc6a	82	85.210	ENSOANG00000007672	TNRC6A	100	85.210	Ornithorhynchus_anatinus
ENSLOCG00000005517	tnrc6a	90	82.599	ENSOCUG00000004325	TNRC6A	100	82.599	Oryctolagus_cuniculus
ENSLOCG00000005517	tnrc6a	92	83.002	ENSOGAG00000006666	TNRC6A	100	83.002	Otolemur_garnettii
ENSLOCG00000005517	tnrc6a	92	83.223	ENSOARG00000017950	TNRC6A	100	83.223	Ovis_aries
ENSLOCG00000005517	tnrc6a	93	83.002	ENSPPAG00000028379	TNRC6A	100	83.002	Pan_paniscus
ENSLOCG00000005517	tnrc6a	93	83.223	ENSPPRG00000005861	TNRC6A	99	83.223	Panthera_pardus
ENSLOCG00000005517	tnrc6a	93	83.223	ENSPTIG00000006346	TNRC6A	99	83.223	Panthera_tigris_altaica
ENSLOCG00000005517	tnrc6a	90	83.223	ENSPTRG00000007898	TNRC6A	99	83.223	Pan_troglodytes
ENSLOCG00000005517	tnrc6a	93	73.289	ENSPANG00000018523	TNRC6A	99	74.172	Papio_anubis
ENSLOCG00000005517	tnrc6a	86	85.644	ENSPKIG00000012859	tnrc6a	100	85.644	Paramormyrops_kingsleyae
ENSLOCG00000005517	tnrc6a	73	75.110	ENSPSIG00000003965	TNRC6A	100	75.110	Pelodiscus_sinensis
ENSLOCG00000005517	tnrc6a	93	83.002	ENSPEMG00000016318	Tnrc6a	100	83.002	Peromyscus_maniculatus_bairdii
ENSLOCG00000005517	tnrc6a	90	84.989	ENSPCIG00000012106	TNRC6A	99	84.989	Phascolarctos_cinereus
ENSLOCG00000005517	tnrc6a	93	83.223	ENSPPYG00000007202	TNRC6A	100	83.223	Pongo_abelii
ENSLOCG00000005517	tnrc6a	91	89.172	ENSPCAG00000008260	TNRC6A	92	89.744	Procavia_capensis
ENSLOCG00000005517	tnrc6a	91	84.236	ENSPCOG00000010134	TNRC6A	99	84.236	Propithecus_coquereli
ENSLOCG00000005517	tnrc6a	83	80.658	ENSPVAG00000012066	TNRC6A	99	80.658	Pteropus_vampyrus
ENSLOCG00000005517	tnrc6a	93	82.781	ENSRNOG00000024737	Tnrc6a	99	83.408	Rattus_norvegicus
ENSLOCG00000005517	tnrc6a	90	83.002	ENSRBIG00000014222	TNRC6A	100	83.002	Rhinopithecus_bieti
ENSLOCG00000005517	tnrc6a	93	83.002	ENSRROG00000032360	TNRC6A	99	83.002	Rhinopithecus_roxellana
ENSLOCG00000005517	tnrc6a	90	83.223	ENSSBOG00000036197	TNRC6A	100	83.223	Saimiri_boliviensis_boliviensis
ENSLOCG00000005517	tnrc6a	85	79.332	ENSSHAG00000008811	TNRC6A	100	80.167	Sarcophilus_harrisii
ENSLOCG00000005517	tnrc6a	89	91.383	ENSSFOG00015008920	tnrc6a	100	81.575	Scleropages_formosus
ENSLOCG00000005517	tnrc6a	63	79.245	ENSSARG00000002479	TNRC6A	86	79.245	Sorex_araneus
ENSLOCG00000005517	tnrc6a	84	82.819	ENSSPUG00000010525	TNRC6A	100	82.819	Sphenodon_punctatus
ENSLOCG00000005517	tnrc6a	93	83.002	ENSSSCG00000038870	TNRC6A	99	85.461	Sus_scrofa
ENSLOCG00000005517	tnrc6a	93	84.547	ENSTGUG00000006142	TNRC6A	100	84.547	Taeniopygia_guttata
ENSLOCG00000005517	tnrc6a	88	83.457	ENSTBEG00000014965	TNRC6A	98	83.457	Tupaia_belangeri
ENSLOCG00000005517	tnrc6a	86	83.002	ENSTTRG00000002008	TNRC6A	92	83.002	Tursiops_truncatus
ENSLOCG00000005517	tnrc6a	74	77.228	ENSUAMG00000006656	-	93	77.228	Ursus_americanus
ENSLOCG00000005517	tnrc6a	90	83.223	ENSUMAG00000008274	TNRC6A	100	83.223	Ursus_maritimus
ENSLOCG00000005517	tnrc6a	53	62.270	ENSVPAG00000010764	-	54	69.316	Vicugna_pacos
ENSLOCG00000005517	tnrc6a	92	83.223	ENSVVUG00000005380	TNRC6A	98	85.461	Vulpes_vulpes
ENSLOCG00000005517	tnrc6a	89	80.580	ENSXETG00000030437	TNRC6A	99	80.580	Xenopus_tropicalis