EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000005994 (Gene tree)
Gene ID: 102690507
Gene Symbol: srsf1a
Alias: sfrs1|sfrs1b|wu:fb80g05|zgc:111894|zgc:65898|zgc:76897
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 3872 bases
Position: chrLG22:9413727-9417598
Accession: 102690507
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000007242	RRM_1	PF00076.22	1.1e-33	1	2
ENSLOCP00000007242	RRM_1	PF00076.22	1.1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000007250	-	744	XM_006641083	ENSLOCP00000007242	247 (aa)	XP_015223142	W5MFT3

Gene Model

Click here to download ENSLOCG00000005994's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000005994's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000005994	srsf1a	78	41.667	ENSLOCG00000001442	-	53	42.029
ENSLOCG00000005994	srsf1a	66	45.506	ENSLOCG00000014075	srsf5a	57	42.697
ENSLOCG00000005994	srsf1a	64	43.678	ENSLOCG00000012438	srsf5b	63	42.442
ENSLOCG00000005994	srsf1a	72	71.186	ENSLOCG00000004044	srsf9	70	70.056

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000005994	srsf1a	100	97.177	ENSG00000136450	SRSF1	100	100.000	Homo_sapiens
ENSLOCG00000005994	srsf1a	79	89.286	ENSAPOG00000008542	-	81	88.177	Acanthochromis_polyacanthus
ENSLOCG00000005994	srsf1a	78	91.667	ENSAPOG00000002748	-	78	89.062	Acanthochromis_polyacanthus
ENSLOCG00000005994	srsf1a	100	95.142	ENSAMEG00000002635	SRSF1	100	95.142	Ailuropoda_melanoleuca
ENSLOCG00000005994	srsf1a	78	91.667	ENSACIG00000008091	srsf1a	83	89.583	Amphilophus_citrinellus
ENSLOCG00000005994	srsf1a	78	92.188	ENSAOCG00000010671	-	83	89.062	Amphiprion_ocellaris
ENSLOCG00000005994	srsf1a	79	89.163	ENSAOCG00000000337	-	82	88.177	Amphiprion_ocellaris
ENSLOCG00000005994	srsf1a	79	89.163	ENSAPEG00000023352	-	81	88.177	Amphiprion_percula
ENSLOCG00000005994	srsf1a	78	92.188	ENSAPEG00000009915	-	83	89.062	Amphiprion_percula
ENSLOCG00000005994	srsf1a	82	87.624	ENSATEG00000021567	-	81	88.265	Anabas_testudineus
ENSLOCG00000005994	srsf1a	78	92.188	ENSATEG00000022403	-	77	89.062	Anabas_testudineus
ENSLOCG00000005994	srsf1a	100	97.984	ENSACAG00000005542	-	100	97.984	Anolis_carolinensis
ENSLOCG00000005994	srsf1a	99	97.154	ENSANAG00000020583	-	99	98.611	Aotus_nancymaae
ENSLOCG00000005994	srsf1a	81	70.352	ENSANAG00000025417	-	75	69.898	Aotus_nancymaae
ENSLOCG00000005994	srsf1a	74	86.408	ENSAMXG00000024373	-	72	83.226	Astyanax_mexicanus
ENSLOCG00000005994	srsf1a	94	90.377	ENSAMXG00000035996	srsf1a	79	93.467	Astyanax_mexicanus
ENSLOCG00000005994	srsf1a	100	97.177	ENSBTAG00000014766	SRSF1	100	97.177	Bos_taurus
ENSLOCG00000005994	srsf1a	99	97.154	ENSCJAG00000041713	-	99	98.611	Callithrix_jacchus
ENSLOCG00000005994	srsf1a	79	87.245	ENSCJAG00000008111	-	88	88.325	Callithrix_jacchus
ENSLOCG00000005994	srsf1a	99	97.154	ENSCAFG00000017430	SRSF1	97	97.154	Canis_familiaris
ENSLOCG00000005994	srsf1a	99	97.154	ENSCAFG00020025632	-	97	97.154	Canis_lupus_dingo
ENSLOCG00000005994	srsf1a	100	97.177	ENSCHIG00000010787	SRSF1	100	97.177	Capra_hircus
ENSLOCG00000005994	srsf1a	99	97.154	ENSTSYG00000013899	-	99	98.611	Carlito_syrichta
ENSLOCG00000005994	srsf1a	100	97.177	ENSCPOG00000032681	-	100	97.177	Cavia_porcellus
ENSLOCG00000005994	srsf1a	100	97.177	ENSCCAG00000029484	-	99	98.611	Cebus_capucinus
ENSLOCG00000005994	srsf1a	99	97.154	ENSCATG00000042294	-	99	98.611	Cercocebus_atys
ENSLOCG00000005994	srsf1a	100	97.177	ENSCLAG00000014707	-	100	97.177	Chinchilla_lanigera
ENSLOCG00000005994	srsf1a	99	96.341	ENSCSAG00000005642	-	97	96.341	Chlorocebus_sabaeus
ENSLOCG00000005994	srsf1a	100	97.177	ENSCHOG00000001899	SRSF1	100	97.177	Choloepus_hoffmanni
ENSLOCG00000005994	srsf1a	100	98.387	ENSCPBG00000009851	-	100	98.387	Chrysemys_picta_bellii
ENSLOCG00000005994	srsf1a	99	97.154	ENSCANG00000029726	-	99	98.611	Colobus_angolensis_palliatus
ENSLOCG00000005994	srsf1a	99	97.154	ENSCGRG00001000670	Srsf1	97	97.154	Cricetulus_griseus_chok1gshd
ENSLOCG00000005994	srsf1a	100	97.177	ENSCGRG00000005590	Srsf1	100	97.177	Cricetulus_griseus_crigri
ENSLOCG00000005994	srsf1a	78	92.347	ENSCSEG00000014272	-	78	92.347	Cynoglossus_semilaevis
ENSLOCG00000005994	srsf1a	79	83.019	ENSCSEG00000009973	-	81	82.075	Cynoglossus_semilaevis
ENSLOCG00000005994	srsf1a	78	88.205	ENSCVAG00000005458	-	91	87.978	Cyprinodon_variegatus
ENSLOCG00000005994	srsf1a	78	92.188	ENSCVAG00000018617	-	78	89.062	Cyprinodon_variegatus
ENSLOCG00000005994	srsf1a	78	89.216	ENSDARG00000057691	srsf1a	99	91.623	Danio_rerio
ENSLOCG00000005994	srsf1a	99	97.551	ENSDARG00000017843	srsf1b	79	96.392	Danio_rerio
ENSLOCG00000005994	srsf1a	99	97.154	ENSDNOG00000011737	-	97	97.154	Dasypus_novemcinctus
ENSLOCG00000005994	srsf1a	100	97.177	ENSDORG00000015082	Srsf1	100	97.177	Dipodomys_ordii
ENSLOCG00000005994	srsf1a	74	96.196	ENSETEG00000005349	-	63	96.196	Echinops_telfairi
ENSLOCG00000005994	srsf1a	99	97.154	ENSEASG00005002922	-	97	97.154	Equus_asinus_asinus
ENSLOCG00000005994	srsf1a	100	97.177	ENSECAG00000016654	SRSF1	100	97.177	Equus_caballus
ENSLOCG00000005994	srsf1a	74	97.283	ENSEEUG00000009255	-	63	97.283	Erinaceus_europaeus
ENSLOCG00000005994	srsf1a	78	95.855	ENSELUG00000021646	srsf1a	77	95.855	Esox_lucius
ENSLOCG00000005994	srsf1a	99	97.154	ENSFCAG00000002250	-	97	97.154	Felis_catus
ENSLOCG00000005994	srsf1a	99	81.707	ENSFALG00000005062	-	97	81.707	Ficedula_albicollis
ENSLOCG00000005994	srsf1a	100	97.177	ENSFDAG00000010646	-	100	97.177	Fukomys_damarensis
ENSLOCG00000005994	srsf1a	78	92.188	ENSFHEG00000003174	srsf1a	83	89.062	Fundulus_heteroclitus
ENSLOCG00000005994	srsf1a	80	90.863	ENSGMOG00000014787	-	80	88.542	Gadus_morhua
ENSLOCG00000005994	srsf1a	100	98.387	ENSGALG00000005525	SRSF1	100	98.387	Gallus_gallus
ENSLOCG00000005994	srsf1a	79	87.245	ENSGACG00000020621	srsf1b	80	85.204	Gasterosteus_aculeatus
ENSLOCG00000005994	srsf1a	99	98.374	ENSGAGG00000022965	-	97	98.374	Gopherus_agassizii
ENSLOCG00000005994	srsf1a	99	97.154	ENSGGOG00000004386	SRSF1	99	98.611	Gorilla_gorilla
ENSLOCG00000005994	srsf1a	78	91.667	ENSHBUG00000016788	srsf1a	80	89.583	Haplochromis_burtoni
ENSLOCG00000005994	srsf1a	87	96.744	ENSHGLG00000000669	-	100	96.744	Heterocephalus_glaber_female
ENSLOCG00000005994	srsf1a	87	96.744	ENSHGLG00000000600	-	100	96.744	Heterocephalus_glaber_female
ENSLOCG00000005994	srsf1a	100	97.177	ENSHGLG00100016906	-	100	97.177	Heterocephalus_glaber_male
ENSLOCG00000005994	srsf1a	78	84.264	ENSHCOG00000018918	srsf1a	77	87.310	Hippocampus_comes
ENSLOCG00000005994	srsf1a	94	89.958	ENSIPUG00000017039	srsf1a	79	93.970	Ictalurus_punctatus
ENSLOCG00000005994	srsf1a	100	97.571	ENSIPUG00000008750	srsf1b	100	97.571	Ictalurus_punctatus
ENSLOCG00000005994	srsf1a	100	97.177	ENSSTOG00000000243	-	100	97.177	Ictidomys_tridecemlineatus
ENSLOCG00000005994	srsf1a	100	97.177	ENSJJAG00000000102	-	100	97.177	Jaculus_jaculus
ENSLOCG00000005994	srsf1a	51	92.857	ENSJJAG00000014464	-	95	92.857	Jaculus_jaculus
ENSLOCG00000005994	srsf1a	78	92.188	ENSKMAG00000019232	srsf1a	78	92.188	Kryptolebias_marmoratus
ENSLOCG00000005994	srsf1a	78	93.229	ENSLBEG00000020864	-	83	90.104	Labrus_bergylta
ENSLOCG00000005994	srsf1a	79	85.000	ENSLBEG00000015294	-	80	85.500	Labrus_bergylta
ENSLOCG00000005994	srsf1a	99	96.311	ENSLACG00000014160	srsf1a	73	96.373	Latimeria_chalumnae
ENSLOCG00000005994	srsf1a	100	97.177	ENSLAFG00000025743	SRSF1	100	97.177	Loxodonta_africana
ENSLOCG00000005994	srsf1a	100	97.177	ENSMFAG00000040003	-	99	98.611	Macaca_fascicularis
ENSLOCG00000005994	srsf1a	99	97.154	ENSMMUG00000004725	SRSF1	99	98.611	Macaca_mulatta
ENSLOCG00000005994	srsf1a	100	90.726	ENSMMUG00000003260	-	95	90.816	Macaca_mulatta
ENSLOCG00000005994	srsf1a	99	97.154	ENSMNEG00000027680	-	99	98.611	Macaca_nemestrina
ENSLOCG00000005994	srsf1a	100	90.323	ENSMNEG00000015983	-	78	92.893	Macaca_nemestrina
ENSLOCG00000005994	srsf1a	100	91.093	ENSMLEG00000015243	-	77	91.837	Mandrillus_leucophaeus
ENSLOCG00000005994	srsf1a	100	97.177	ENSMLEG00000040509	SRSF1	100	97.177	Mandrillus_leucophaeus
ENSLOCG00000005994	srsf1a	79	89.286	ENSMAMG00000019687	-	80	87.245	Mastacembelus_armatus
ENSLOCG00000005994	srsf1a	78	92.188	ENSMAMG00000018454	-	78	89.062	Mastacembelus_armatus
ENSLOCG00000005994	srsf1a	79	94.898	ENSMAMG00000019691	-	81	94.898	Mastacembelus_armatus
ENSLOCG00000005994	srsf1a	100	97.177	ENSMAUG00000021845	Srsf1	100	97.177	Mesocricetus_auratus
ENSLOCG00000005994	srsf1a	99	97.154	ENSMICG00000013639	-	99	98.611	Microcebus_murinus
ENSLOCG00000005994	srsf1a	100	97.177	ENSMOCG00000001996	Srsf1	100	97.177	Microtus_ochrogaster
ENSLOCG00000005994	srsf1a	78	92.708	ENSMMOG00000014354	srsf1a	83	89.583	Mola_mola
ENSLOCG00000005994	srsf1a	74	97.297	ENSMODG00000014781	-	63	97.297	Monodelphis_domestica
ENSLOCG00000005994	srsf1a	78	91.667	ENSMALG00000017129	-	75	88.542	Monopterus_albus
ENSLOCG00000005994	srsf1a	82	81.773	ENSMALG00000007763	-	79	81.633	Monopterus_albus
ENSLOCG00000005994	srsf1a	100	97.177	MGP_CAROLIEiJ_G0016943	Srsf1	100	97.177	Mus_caroli
ENSLOCG00000005994	srsf1a	100	97.177	ENSMUSG00000018379	Srsf1	100	97.177	Mus_musculus
ENSLOCG00000005994	srsf1a	100	97.177	MGP_PahariEiJ_G0018074	Srsf1	100	97.177	Mus_pahari
ENSLOCG00000005994	srsf1a	100	97.177	MGP_SPRETEiJ_G0017790	Srsf1	100	97.177	Mus_spretus
ENSLOCG00000005994	srsf1a	100	97.177	ENSMPUG00000015369	SRSF1	100	97.177	Mustela_putorius_furo
ENSLOCG00000005994	srsf1a	100	97.177	ENSMLUG00000011040	SRSF1	100	97.177	Myotis_lucifugus
ENSLOCG00000005994	srsf1a	82	87.129	ENSMLUG00000023995	-	79	87.755	Myotis_lucifugus
ENSLOCG00000005994	srsf1a	100	97.177	ENSNGAG00000011395	Srsf1	100	97.177	Nannospalax_galili
ENSLOCG00000005994	srsf1a	100	81.377	ENSNBRG00000008041	srsf1b	80	81.122	Neolamprologus_brichardi
ENSLOCG00000005994	srsf1a	99	97.154	ENSNLEG00000008088	-	99	98.611	Nomascus_leucogenys
ENSLOCG00000005994	srsf1a	51	96.850	ENSMEUG00000002783	-	100	96.850	Notamacropus_eugenii
ENSLOCG00000005994	srsf1a	74	96.175	ENSOPRG00000001234	-	100	96.175	Ochotona_princeps
ENSLOCG00000005994	srsf1a	100	96.774	ENSODEG00000011481	-	100	96.774	Octodon_degus
ENSLOCG00000005994	srsf1a	78	91.667	ENSONIG00000013160	-	77	89.583	Oreochromis_niloticus
ENSLOCG00000005994	srsf1a	96	90.678	ENSONIG00000004860	-	81	94.898	Oreochromis_niloticus
ENSLOCG00000005994	srsf1a	100	69.323	ENSOCUG00000010894	-	77	72.165	Oryctolagus_cuniculus
ENSLOCG00000005994	srsf1a	78	92.188	ENSORLG00000004580	srsf1a	78	89.062	Oryzias_latipes
ENSLOCG00000005994	srsf1a	78	92.188	ENSORLG00020009456	srsf1a	83	89.062	Oryzias_latipes_hni
ENSLOCG00000005994	srsf1a	78	92.188	ENSORLG00015014384	srsf1a	83	89.062	Oryzias_latipes_hsok
ENSLOCG00000005994	srsf1a	71	90.286	ENSOMEG00000004106	srsf1a	71	86.857	Oryzias_melastigma
ENSLOCG00000005994	srsf1a	100	97.177	ENSOGAG00000025950	-	100	97.177	Otolemur_garnettii
ENSLOCG00000005994	srsf1a	100	93.522	ENSOARG00000008323	SRSF1	100	93.522	Ovis_aries
ENSLOCG00000005994	srsf1a	100	97.177	ENSPPAG00000043403	-	99	98.611	Pan_paniscus
ENSLOCG00000005994	srsf1a	100	97.177	ENSPPRG00000004238	-	100	97.177	Panthera_pardus
ENSLOCG00000005994	srsf1a	99	97.154	ENSPTRG00000049077	SRSF1	99	98.611	Pan_troglodytes
ENSLOCG00000005994	srsf1a	99	97.154	ENSPANG00000022305	-	99	98.611	Papio_anubis
ENSLOCG00000005994	srsf1a	99	74.694	ENSPANG00000030275	-	75	69.744	Papio_anubis
ENSLOCG00000005994	srsf1a	78	95.337	ENSPKIG00000007204	srsf1a	83	94.271	Paramormyrops_kingsleyae
ENSLOCG00000005994	srsf1a	100	97.571	ENSPKIG00000012857	srsf1b	100	97.571	Paramormyrops_kingsleyae
ENSLOCG00000005994	srsf1a	79	87.940	ENSPSIG00000009000	-	78	98.611	Pelodiscus_sinensis
ENSLOCG00000005994	srsf1a	96	84.874	ENSPMGG00000005467	-	78	84.375	Periophthalmus_magnuspinnatus
ENSLOCG00000005994	srsf1a	78	89.062	ENSPMGG00000013112	-	82	87.500	Periophthalmus_magnuspinnatus
ENSLOCG00000005994	srsf1a	100	97.177	ENSPEMG00000021416	Srsf1	100	97.177	Peromyscus_maniculatus_bairdii
ENSLOCG00000005994	srsf1a	100	97.189	ENSPCIG00000006076	-	100	97.189	Phascolarctos_cinereus
ENSLOCG00000005994	srsf1a	79	88.384	ENSPFOG00000018325	-	70	88.660	Poecilia_formosa
ENSLOCG00000005994	srsf1a	79	88.384	ENSPLAG00000008416	srsf1b	79	88.660	Poecilia_latipinna
ENSLOCG00000005994	srsf1a	79	88.384	ENSPMEG00000002388	-	79	88.660	Poecilia_mexicana
ENSLOCG00000005994	srsf1a	78	92.188	ENSPREG00000009667	srsf1a	78	89.062	Poecilia_reticulata
ENSLOCG00000005994	srsf1a	100	97.177	ENSPPYG00000008240	SRSF1	100	97.177	Pongo_abelii
ENSLOCG00000005994	srsf1a	100	97.177	ENSPCAG00000005199	SRSF1	100	97.177	Procavia_capensis
ENSLOCG00000005994	srsf1a	100	97.177	ENSPCOG00000023654	-	99	98.611	Propithecus_coquereli
ENSLOCG00000005994	srsf1a	80	76.733	ENSPCOG00000025736	-	95	76.382	Propithecus_coquereli
ENSLOCG00000005994	srsf1a	75	100.000	ENSPVAG00000000519	-	75	100.000	Pteropus_vampyrus
ENSLOCG00000005994	srsf1a	94	93.991	ENSPNAG00000022241	srsf1a	78	93.264	Pygocentrus_nattereri
ENSLOCG00000005994	srsf1a	100	95.951	ENSPNAG00000014601	srsf1b	80	92.857	Pygocentrus_nattereri
ENSLOCG00000005994	srsf1a	100	97.177	ENSRNOG00000050323	Srsf1	100	97.177	Rattus_norvegicus
ENSLOCG00000005994	srsf1a	99	97.154	ENSRBIG00000034445	-	99	98.611	Rhinopithecus_bieti
ENSLOCG00000005994	srsf1a	100	97.177	ENSRROG00000041506	-	99	98.611	Rhinopithecus_roxellana
ENSLOCG00000005994	srsf1a	100	97.177	ENSSBOG00000025377	-	99	98.611	Saimiri_boliviensis_boliviensis
ENSLOCG00000005994	srsf1a	100	97.189	ENSSHAG00000002552	-	100	97.189	Sarcophilus_harrisii
ENSLOCG00000005994	srsf1a	99	97.154	ENSSFOG00015004800	srsf1a	99	97.154	Scleropages_formosus
ENSLOCG00000005994	srsf1a	94	86.667	ENSSMAG00000009719	-	80	85.784	Scophthalmus_maximus
ENSLOCG00000005994	srsf1a	78	92.708	ENSSMAG00000007018	-	78	89.583	Scophthalmus_maximus
ENSLOCG00000005994	srsf1a	78	93.229	ENSSDUG00000011303	-	83	90.104	Seriola_dumerili
ENSLOCG00000005994	srsf1a	100	76.494	ENSSDUG00000003929	-	84	84.000	Seriola_dumerili
ENSLOCG00000005994	srsf1a	79	78.680	ENSSLDG00000016868	-	78	82.234	Seriola_lalandi_dorsalis
ENSLOCG00000005994	srsf1a	78	93.229	ENSSLDG00000010543	-	78	90.104	Seriola_lalandi_dorsalis
ENSLOCG00000005994	srsf1a	95	77.021	ENSSLDG00000016895	-	78	86.559	Seriola_lalandi_dorsalis
ENSLOCG00000005994	srsf1a	74	97.283	ENSSARG00000010949	-	63	97.283	Sorex_araneus
ENSLOCG00000005994	srsf1a	99	98.374	ENSSPUG00000000804	-	97	98.374	Sphenodon_punctatus
ENSLOCG00000005994	srsf1a	79	86.124	ENSSPAG00000014152	-	81	85.167	Stegastes_partitus
ENSLOCG00000005994	srsf1a	78	92.188	ENSSPAG00000022562	-	78	92.188	Stegastes_partitus
ENSLOCG00000005994	srsf1a	100	97.177	ENSSSCG00000017626	-	100	97.177	Sus_scrofa
ENSLOCG00000005994	srsf1a	74	97.826	ENSTGUG00000008416	-	100	97.826	Taeniopygia_guttata
ENSLOCG00000005994	srsf1a	78	91.667	ENSTRUG00000003691	srsf1a	78	88.542	Takifugu_rubripes
ENSLOCG00000005994	srsf1a	78	91.667	ENSTNIG00000016223	srsf1a	77	88.542	Tetraodon_nigroviridis
ENSLOCG00000005994	srsf1a	74	95.652	ENSTBEG00000015378	-	63	95.652	Tupaia_belangeri
ENSLOCG00000005994	srsf1a	74	96.175	ENSTTRG00000007310	SRSF1	100	96.175	Tursiops_truncatus
ENSLOCG00000005994	srsf1a	100	97.177	ENSUAMG00000009858	SRSF1	100	97.177	Ursus_americanus
ENSLOCG00000005994	srsf1a	99	97.154	ENSUMAG00000000455	-	97	97.154	Ursus_maritimus
ENSLOCG00000005994	srsf1a	100	96.774	ENSVPAG00000010094	SRSF1	100	96.774	Vicugna_pacos
ENSLOCG00000005994	srsf1a	99	97.154	ENSVVUG00000011882	-	97	97.154	Vulpes_vulpes
ENSLOCG00000005994	srsf1a	100	95.547	ENSXETG00000008954	srsf1	100	90.262	Xenopus_tropicalis
ENSLOCG00000005994	srsf1a	78	92.188	ENSXMAG00000011766	srsf1a	78	89.062	Xiphophorus_maculatus