EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000006272 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 1572 bases
Position: chrLG9:12071322-12072893
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000007587	RVT_1	PF00078.27	2.8e-12	1	1
ENSLOCP00000007572	RVT_1	PF00078.27	1.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000007580	-	1545	-	ENSLOCP00000007572	515 (aa)	-	W5MGR3
ENSLOCT00000007596	-	1119	-	ENSLOCP00000007587	373 (aa)	-	W5MGS8

Gene Model

Click here to download ENSLOCG00000006272's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000006272's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000006272	-	61	45.175	ENSLOCG00000015915	-	71	45.175
ENSLOCG00000006272	-	100	48.705	ENSLOCG00000017249	-	52	50.455
ENSLOCG00000006272	-	89	47.103	ENSLOCG00000004365	-	96	47.103
ENSLOCG00000006272	-	62	37.662	ENSLOCG00000011039	-	75	38.095
ENSLOCG00000006272	-	59	46.288	ENSLOCG00000017839	-	75	46.288
ENSLOCG00000006272	-	87	83.007	ENSLOCG00000016955	-	90	58.707
ENSLOCG00000006272	-	98	77.181	ENSLOCG00000008864	-	82	77.181
ENSLOCG00000006272	-	73	54.545	ENSLOCG00000016625	-	88	54.545
ENSLOCG00000006272	-	67	52.410	ENSLOCG00000017287	-	66	52.410

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000006272	-	56	33.333	ENSEBUG00000002995	-	84	34.457	Eptatretus_burgeri
ENSLOCG00000006272	-	83	32.624	ENSLACG00000011039	-	69	32.283	Latimeria_chalumnae
ENSLOCG00000006272	-	80	37.168	ENSMODG00000029011	-	75	37.168	Monodelphis_domestica