EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000006302 (Gene tree)
Gene ID: 102683860
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 15835 bases
Position: chrLG5:8976722-8992556
Accession: 102683860
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000007610	dsrm	PF00035.26	3.3e-06	1	1
ENSLOCP00000007610	DND1_DSRM	PF14709.7	6e-26	1	1
ENSLOCP00000007610	RRM_1	PF00076.22	4.4e-41	1	3
ENSLOCP00000007610	RRM_1	PF00076.22	4.4e-41	2	3
ENSLOCP00000007610	RRM_1	PF00076.22	4.4e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000007619	-	1906	XM_006630373	ENSLOCP00000007610	593 (aa)	XP_006630436	W5MGV1

Gene Model

Click here to download ENSLOCG00000006302's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000006302's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000006302	a1cf	51	54.045	ENSLOCG00000004400	hnrnpr	50	54.045
ENSLOCG00000006302	a1cf	93	50.785	ENSLOCG00000012966	rbm47	75	53.119
ENSLOCG00000006302	a1cf	52	52.716	ENSLOCG00000016919	syncripl	66	53.247
ENSLOCG00000006302	a1cf	71	64.217	ENSLOCG00000008298	rbm46	89	64.217

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000006302	a1cf	100	82.137	ENSG00000148584	A1CF	100	90.050	Homo_sapiens
ENSLOCG00000006302	a1cf	100	77.815	ENSAPOG00000008259	a1cf	100	77.815	Acanthochromis_polyacanthus
ENSLOCG00000006302	a1cf	100	81.240	ENSAMEG00000000523	A1CF	100	81.407	Ailuropoda_melanoleuca
ENSLOCG00000006302	a1cf	100	78.303	ENSACIG00000008632	a1cf	100	80.587	Amphilophus_citrinellus
ENSLOCG00000006302	a1cf	100	78.654	ENSAOCG00000023744	a1cf	96	88.116	Amphiprion_ocellaris
ENSLOCG00000006302	a1cf	100	79.803	ENSAPEG00000009537	a1cf	100	80.952	Amphiprion_percula
ENSLOCG00000006302	a1cf	100	80.293	ENSATEG00000013720	a1cf	100	81.596	Anabas_testudineus
ENSLOCG00000006302	a1cf	100	84.175	ENSAPLG00000002964	A1CF	100	84.175	Anas_platyrhynchos
ENSLOCG00000006302	a1cf	100	80.976	ENSACAG00000015269	A1CF	100	80.976	Anolis_carolinensis
ENSLOCG00000006302	a1cf	100	80.801	ENSANAG00000019974	A1CF	100	80.968	Aotus_nancymaae
ENSLOCG00000006302	a1cf	100	78.347	ENSACLG00000017428	a1cf	100	80.331	Astatotilapia_calliptera
ENSLOCG00000006302	a1cf	100	81.518	ENSAMXG00000018180	a1cf	100	81.518	Astyanax_mexicanus
ENSLOCG00000006302	a1cf	100	81.000	ENSBTAG00000021195	A1CF	100	81.000	Bos_taurus
ENSLOCG00000006302	a1cf	100	82.304	ENSCJAG00000005045	A1CF	100	82.471	Callithrix_jacchus
ENSLOCG00000006302	a1cf	100	82.047	ENSCAFG00000015581	A1CF	100	82.383	Canis_familiaris
ENSLOCG00000006302	a1cf	100	82.047	ENSCAFG00020026421	A1CF	98	86.195	Canis_lupus_dingo
ENSLOCG00000006302	a1cf	100	82.167	ENSCHIG00000020411	A1CF	100	82.167	Capra_hircus
ENSLOCG00000006302	a1cf	97	80.069	ENSTSYG00000001755	A1CF	100	80.674	Carlito_syrichta
ENSLOCG00000006302	a1cf	100	74.706	ENSCAPG00000017386	A1CF	100	74.706	Cavia_aperea
ENSLOCG00000006302	a1cf	100	80.968	ENSCPOG00000009807	A1CF	100	81.135	Cavia_porcellus
ENSLOCG00000006302	a1cf	100	82.609	ENSCCAG00000018168	A1CF	100	82.609	Cebus_capucinus
ENSLOCG00000006302	a1cf	100	81.240	ENSCATG00000043715	A1CF	100	81.240	Cercocebus_atys
ENSLOCG00000006302	a1cf	100	81.333	ENSCLAG00000010424	A1CF	100	81.333	Chinchilla_lanigera
ENSLOCG00000006302	a1cf	100	83.082	ENSCSAG00000007032	A1CF	100	83.082	Chlorocebus_sabaeus
ENSLOCG00000006302	a1cf	98	76.923	ENSCHOG00000009089	A1CF	99	76.923	Choloepus_hoffmanni
ENSLOCG00000006302	a1cf	100	83.838	ENSCPBG00000026464	A1CF	100	83.670	Chrysemys_picta_bellii
ENSLOCG00000006302	a1cf	100	82.915	ENSCANG00000038032	A1CF	100	82.915	Colobus_angolensis_palliatus
ENSLOCG00000006302	a1cf	100	81.167	ENSCGRG00001017413	A1cf	100	81.167	Cricetulus_griseus_chok1gshd
ENSLOCG00000006302	a1cf	100	80.500	ENSCGRG00000017332	A1cf	100	80.833	Cricetulus_griseus_crigri
ENSLOCG00000006302	a1cf	100	78.254	ENSCSEG00000002361	a1cf	100	79.407	Cynoglossus_semilaevis
ENSLOCG00000006302	a1cf	100	79.479	ENSCVAG00000010520	a1cf	100	81.270	Cyprinodon_variegatus
ENSLOCG00000006302	a1cf	100	83.779	ENSDARG00000002968	a1cf	100	84.615	Danio_rerio
ENSLOCG00000006302	a1cf	100	81.000	ENSDNOG00000002829	A1CF	100	81.000	Dasypus_novemcinctus
ENSLOCG00000006302	a1cf	81	86.957	ENSETEG00000012527	A1CF	81	86.957	Echinops_telfairi
ENSLOCG00000006302	a1cf	100	82.060	ENSEASG00005012924	A1CF	100	82.060	Equus_asinus_asinus
ENSLOCG00000006302	a1cf	100	81.728	ENSECAG00000010424	A1CF	100	81.728	Equus_caballus
ENSLOCG00000006302	a1cf	78	71.550	ENSEEUG00000000013	A1CF	97	72.308	Erinaceus_europaeus
ENSLOCG00000006302	a1cf	100	87.037	ENSELUG00000003159	a1cf	100	87.879	Esox_lucius
ENSLOCG00000006302	a1cf	100	80.235	ENSFCAG00000011179	A1CF	100	80.737	Felis_catus
ENSLOCG00000006302	a1cf	100	82.828	ENSFALG00000013183	A1CF	100	82.828	Ficedula_albicollis
ENSLOCG00000006302	a1cf	100	79.500	ENSFDAG00000019371	A1CF	100	79.667	Fukomys_damarensis
ENSLOCG00000006302	a1cf	100	73.453	ENSFHEG00000019652	a1cf	96	88.281	Fundulus_heteroclitus
ENSLOCG00000006302	a1cf	100	77.190	ENSGMOG00000018943	a1cf	100	76.316	Gadus_morhua
ENSLOCG00000006302	a1cf	95	83.837	ENSGALG00000003765	A1CF	97	83.837	Gallus_gallus
ENSLOCG00000006302	a1cf	100	74.262	ENSGAFG00000014868	a1cf	100	75.246	Gambusia_affinis
ENSLOCG00000006302	a1cf	100	78.783	ENSGACG00000010241	a1cf	100	79.605	Gasterosteus_aculeatus
ENSLOCG00000006302	a1cf	94	83.779	ENSGAGG00000016508	A1CF	97	83.601	Gopherus_agassizii
ENSLOCG00000006302	a1cf	100	82.137	ENSGGOG00000009670	A1CF	100	82.304	Gorilla_gorilla
ENSLOCG00000006302	a1cf	100	78.467	ENSHBUG00000021959	a1cf	100	80.914	Haplochromis_burtoni
ENSLOCG00000006302	a1cf	100	81.000	ENSHGLG00000008955	A1CF	100	81.000	Heterocephalus_glaber_female
ENSLOCG00000006302	a1cf	100	80.333	ENSHGLG00100000518	A1CF	100	80.333	Heterocephalus_glaber_male
ENSLOCG00000006302	a1cf	100	71.382	ENSHCOG00000017669	a1cf	100	75.325	Hippocampus_comes
ENSLOCG00000006302	a1cf	91	87.732	ENSIPUG00000010367	a1cf	95	88.368	Ictalurus_punctatus
ENSLOCG00000006302	a1cf	100	80.488	ENSKMAG00000006568	a1cf	100	81.463	Kryptolebias_marmoratus
ENSLOCG00000006302	a1cf	99	80.851	ENSLBEG00000020994	a1cf	98	82.372	Labrus_bergylta
ENSLOCG00000006302	a1cf	100	84.654	ENSLACG00000008061	A1CF	100	84.317	Latimeria_chalumnae
ENSLOCG00000006302	a1cf	100	82.167	ENSLAFG00000015462	A1CF	100	82.167	Loxodonta_africana
ENSLOCG00000006302	a1cf	100	81.575	ENSMFAG00000035948	A1CF	100	81.575	Macaca_fascicularis
ENSLOCG00000006302	a1cf	100	81.575	ENSMMUG00000007077	A1CF	100	81.575	Macaca_mulatta
ENSLOCG00000006302	a1cf	100	81.240	ENSMNEG00000031454	A1CF	100	81.240	Macaca_nemestrina
ENSLOCG00000006302	a1cf	100	82.580	ENSMLEG00000037223	A1CF	100	82.580	Mandrillus_leucophaeus
ENSLOCG00000006302	a1cf	100	78.069	ENSMAMG00000010402	a1cf	100	79.542	Mastacembelus_armatus
ENSLOCG00000006302	a1cf	100	81.575	ENSMZEG00005013245	a1cf	100	82.580	Maylandia_zebra
ENSLOCG00000006302	a1cf	100	84.034	ENSMGAG00000001507	A1CF	100	84.034	Meleagris_gallopavo
ENSLOCG00000006302	a1cf	100	80.500	ENSMAUG00000007422	A1cf	100	80.667	Mesocricetus_auratus
ENSLOCG00000006302	a1cf	100	79.104	ENSMICG00000003377	A1CF	100	79.270	Microcebus_murinus
ENSLOCG00000006302	a1cf	100	81.167	ENSMOCG00000021536	A1cf	100	81.333	Microtus_ochrogaster
ENSLOCG00000006302	a1cf	100	70.033	ENSMMOG00000009422	a1cf	100	72.517	Mola_mola
ENSLOCG00000006302	a1cf	92	82.149	ENSMODG00000016478	A1CF	97	82.927	Monodelphis_domestica
ENSLOCG00000006302	a1cf	100	77.387	ENSMALG00000012992	a1cf	100	77.219	Monopterus_albus
ENSLOCG00000006302	a1cf	100	80.500	MGP_CAROLIEiJ_G0022873	A1cf	100	80.500	Mus_caroli
ENSLOCG00000006302	a1cf	100	80.500	ENSMUSG00000052595	A1cf	99	85.185	Mus_musculus
ENSLOCG00000006302	a1cf	100	80.167	MGP_PahariEiJ_G0014366	A1cf	100	80.000	Mus_pahari
ENSLOCG00000006302	a1cf	100	80.167	MGP_SPRETEiJ_G0023792	A1cf	100	80.333	Mus_spretus
ENSLOCG00000006302	a1cf	100	75.879	ENSMPUG00000016971	A1CF	100	76.214	Mustela_putorius_furo
ENSLOCG00000006302	a1cf	100	81.167	ENSMLUG00000016071	A1CF	100	81.167	Myotis_lucifugus
ENSLOCG00000006302	a1cf	100	81.500	ENSNGAG00000015136	A1cf	100	81.667	Nannospalax_galili
ENSLOCG00000006302	a1cf	100	78.630	ENSNBRG00000001712	a1cf	100	81.077	Neolamprologus_brichardi
ENSLOCG00000006302	a1cf	100	82.333	ENSNLEG00000012028	A1CF	100	82.333	Nomascus_leucogenys
ENSLOCG00000006302	a1cf	94	82.562	ENSMEUG00000015909	A1CF	100	82.562	Notamacropus_eugenii
ENSLOCG00000006302	a1cf	89	74.480	ENSOPRG00000010667	A1CF	97	74.296	Ochotona_princeps
ENSLOCG00000006302	a1cf	100	79.608	ENSONIG00000019105	a1cf	100	80.914	Oreochromis_niloticus
ENSLOCG00000006302	a1cf	79	81.741	ENSOANG00000007360	A1CF	99	81.741	Ornithorhynchus_anatinus
ENSLOCG00000006302	a1cf	100	79.700	ENSOCUG00000011587	A1CF	100	80.033	Oryctolagus_cuniculus
ENSLOCG00000006302	a1cf	100	79.339	ENSORLG00000013342	a1cf	100	79.174	Oryzias_latipes
ENSLOCG00000006302	a1cf	100	79.869	ENSORLG00020000586	a1cf	100	79.869	Oryzias_latipes_hni
ENSLOCG00000006302	a1cf	100	79.869	ENSORLG00015018569	a1cf	100	79.869	Oryzias_latipes_hsok
ENSLOCG00000006302	a1cf	100	78.560	ENSOMEG00000013531	a1cf	100	78.560	Oryzias_melastigma
ENSLOCG00000006302	a1cf	100	80.737	ENSOGAG00000012884	A1CF	100	80.905	Otolemur_garnettii
ENSLOCG00000006302	a1cf	100	82.333	ENSOARG00000013695	A1CF	100	82.333	Ovis_aries
ENSLOCG00000006302	a1cf	97	81.067	ENSPPAG00000028115	A1CF	99	86.345	Pan_paniscus
ENSLOCG00000006302	a1cf	100	81.910	ENSPPRG00000012180	A1CF	100	82.412	Panthera_pardus
ENSLOCG00000006302	a1cf	100	81.910	ENSPTIG00000021223	A1CF	100	82.412	Panthera_tigris_altaica
ENSLOCG00000006302	a1cf	100	81.970	ENSPTRG00000002508	A1CF	100	82.137	Pan_troglodytes
ENSLOCG00000006302	a1cf	100	81.575	ENSPANG00000021988	A1CF	100	81.575	Papio_anubis
ENSLOCG00000006302	a1cf	100	88.107	ENSPKIG00000025176	a1cf	100	88.107	Paramormyrops_kingsleyae
ENSLOCG00000006302	a1cf	100	82.323	ENSPSIG00000010318	A1CF	100	82.323	Pelodiscus_sinensis
ENSLOCG00000006302	a1cf	89	75.283	ENSPMGG00000013359	a1cf	99	71.282	Periophthalmus_magnuspinnatus
ENSLOCG00000006302	a1cf	100	81.833	ENSPEMG00000015021	A1cf	100	81.667	Peromyscus_maniculatus_bairdii
ENSLOCG00000006302	a1cf	100	82.857	ENSPCIG00000002175	A1CF	100	82.857	Phascolarctos_cinereus
ENSLOCG00000006302	a1cf	100	80.945	ENSPFOG00000007437	-	100	82.736	Poecilia_formosa
ENSLOCG00000006302	a1cf	100	81.107	ENSPFOG00000006683	a1cf	100	82.899	Poecilia_formosa
ENSLOCG00000006302	a1cf	100	79.642	ENSPLAG00000000026	a1cf	100	81.433	Poecilia_latipinna
ENSLOCG00000006302	a1cf	100	79.642	ENSPLAG00000001210	-	100	81.433	Poecilia_latipinna
ENSLOCG00000006302	a1cf	100	72.549	ENSPMEG00000000921	a1cf	100	74.346	Poecilia_mexicana
ENSLOCG00000006302	a1cf	100	73.693	ENSPMEG00000015529	-	100	75.490	Poecilia_mexicana
ENSLOCG00000006302	a1cf	100	80.456	ENSPREG00000016298	a1cf	100	82.573	Poecilia_reticulata
ENSLOCG00000006302	a1cf	100	81.167	ENSPPYG00000002819	A1CF	100	81.167	Pongo_abelii
ENSLOCG00000006302	a1cf	79	64.990	ENSPCAG00000006463	A1CF	68	80.556	Procavia_capensis
ENSLOCG00000006302	a1cf	100	80.699	ENSPCOG00000024172	A1CF	100	80.865	Propithecus_coquereli
ENSLOCG00000006302	a1cf	100	79.935	ENSPNYG00000017944	a1cf	100	82.382	Pundamilia_nyererei
ENSLOCG00000006302	a1cf	100	86.755	ENSPNAG00000007704	a1cf	100	86.755	Pygocentrus_nattereri
ENSLOCG00000006302	a1cf	100	79.333	ENSRNOG00000033195	A1cf	100	79.333	Rattus_norvegicus
ENSLOCG00000006302	a1cf	100	77.295	ENSRBIG00000042892	A1CF	100	79.922	Rhinopithecus_bieti
ENSLOCG00000006302	a1cf	100	82.915	ENSRROG00000041398	A1CF	100	82.915	Rhinopithecus_roxellana
ENSLOCG00000006302	a1cf	100	82.333	ENSSBOG00000021930	A1CF	100	82.500	Saimiri_boliviensis_boliviensis
ENSLOCG00000006302	a1cf	100	83.082	ENSSHAG00000005096	A1CF	100	82.915	Sarcophilus_harrisii
ENSLOCG00000006302	a1cf	100	86.093	ENSSFOG00015011774	a1cf	100	86.755	Scleropages_formosus
ENSLOCG00000006302	a1cf	100	80.945	ENSSMAG00000013271	a1cf	100	81.107	Scophthalmus_maximus
ENSLOCG00000006302	a1cf	100	81.219	ENSSDUG00000013930	a1cf	100	82.043	Seriola_dumerili
ENSLOCG00000006302	a1cf	100	76.066	ENSSLDG00000004290	a1cf	100	76.066	Seriola_lalandi_dorsalis
ENSLOCG00000006302	a1cf	95	71.629	ENSSARG00000005940	A1CF	96	71.454	Sorex_araneus
ENSLOCG00000006302	a1cf	95	82.155	ENSSPUG00000006797	A1CF	95	82.155	Sphenodon_punctatus
ENSLOCG00000006302	a1cf	100	83.000	ENSSSCG00000010431	A1CF	100	83.000	Sus_scrofa
ENSLOCG00000006302	a1cf	100	83.389	ENSTGUG00000005090	A1CF	100	83.389	Taeniopygia_guttata
ENSLOCG00000006302	a1cf	100	79.119	ENSTRUG00000001982	a1cf	100	78.956	Takifugu_rubripes
ENSLOCG00000006302	a1cf	100	78.537	ENSTNIG00000003580	a1cf	100	78.537	Tetraodon_nigroviridis
ENSLOCG00000006302	a1cf	97	75.258	ENSTTRG00000013190	A1CF	95	75.258	Tursiops_truncatus
ENSLOCG00000006302	a1cf	100	80.067	ENSUAMG00000020065	A1CF	100	80.067	Ursus_americanus
ENSLOCG00000006302	a1cf	100	81.513	ENSUMAG00000011162	A1CF	100	81.513	Ursus_maritimus
ENSLOCG00000006302	a1cf	87	77.567	ENSVPAG00000006130	A1CF	86	77.567	Vicugna_pacos
ENSLOCG00000006302	a1cf	100	81.040	ENSVVUG00000002504	A1CF	100	81.208	Vulpes_vulpes
ENSLOCG00000006302	a1cf	100	77.234	ENSXETG00000006611	a1cf	100	77.066	Xenopus_tropicalis
ENSLOCG00000006302	a1cf	100	81.311	ENSXCOG00000003302	a1cf	100	82.295	Xiphophorus_couchianus
ENSLOCG00000006302	a1cf	100	82.459	ENSXMAG00000016703	a1cf	100	83.443	Xiphophorus_maculatus