EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSLOCG00000006397 (Gene tree)
Gene ID
102691169
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Lepisosteus_oculatus
Status
putative
Strand
Plus strand
Length
31317 bases
Position
chrLG22:9856233-9887549
Accession
102691169
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSLOCP00000007732tRNA_anti-codonPF01336.253.3e-1311
ENSLOCP00000007742tRNA_anti-codonPF01336.253.4e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSLOCT00000007751-3900XM_006640917ENSLOCP00000007742607 (aa)-W5MH83
ENSLOCT00000007741-4664-ENSLOCP00000007732605 (aa)XP_015223269W5MH73
Gene Model
Click here to download ENSLOCG00000006397's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000006397's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSLOCG00000006397rpa19962.551ENSAPOG00000019409RPA19262.551Acanthochromis_polyacanthus
ENSLOCG00000006397rpa19972.231ENSAPOG00000011658rpa19972.277Acanthochromis_polyacanthus
ENSLOCG00000006397rpa19668.074ENSAMEG00000007706RPA19668.074Ailuropoda_melanoleuca
ENSLOCG00000006397rpa19560.884ENSACIG00000012881RPA19960.884Amphilophus_citrinellus
ENSLOCG00000006397rpa19665.352ENSACIG00000007277rpa19965.180Amphilophus_citrinellus
ENSLOCG00000006397rpa19973.388ENSAOCG00000023376rpa19973.223Amphiprion_ocellaris
ENSLOCG00000006397rpa19958.372ENSAOCG00000009003RPA110059.077Amphiprion_ocellaris
ENSLOCG00000006397rpa19972.893ENSAPEG00000008634rpa19972.727Amphiprion_percula
ENSLOCG00000006397rpa19957.057ENSAPEG00000019132RPA110057.057Amphiprion_percula
ENSLOCG00000006397rpa19959.356ENSATEG00000006443RPA110059.356Anabas_testudineus
ENSLOCG00000006397rpa19571.777ENSATEG00000022024rpa110071.603Anabas_testudineus
ENSLOCG00000006397rpa19857.567ENSAPLG00000012442RPA19462.594Anas_platyrhynchos
ENSLOCG00000006397rpa19958.525ENSACAG00000014490RPA19958.361Anolis_carolinensis
ENSLOCG00000006397rpa19668.581ENSANAG00000023456RPA19868.581Aotus_nancymaae
ENSLOCG00000006397rpa19473.601ENSACLG00000006640rpa19973.427Astatotilapia_calliptera
ENSLOCG00000006397rpa19960.156ENSACLG00000005223RPA19960.156Astatotilapia_calliptera
ENSLOCG00000006397rpa110071.570ENSAMXG00000008418rpa110072.158Astyanax_mexicanus
ENSLOCG00000006397rpa19966.667ENSBTAG00000009711RPA19966.667Bos_taurus
ENSLOCG00000006397rpa19966.504ENSCJAG00000001848RPA19966.667Callithrix_jacchus
ENSLOCG00000006397rpa19967.101ENSCAFG00000019249RPA19967.101Canis_familiaris
ENSLOCG00000006397rpa19967.101ENSCAFG00020009847RPA19967.101Canis_lupus_dingo
ENSLOCG00000006397rpa19966.992ENSCHIG00000026308RPA19967.317Capra_hircus
ENSLOCG00000006397rpa19966.992ENSTSYG00000003482-9966.992Carlito_syrichta
ENSLOCG00000006397rpa19966.450ENSCPOG00000000035RPA19966.450Cavia_porcellus
ENSLOCG00000006397rpa19956.311ENSCCAG00000010981RPA19956.472Cebus_capucinus
ENSLOCG00000006397rpa19962.866ENSCLAG00000015045-9962.866Chinchilla_lanigera
ENSLOCG00000006397rpa19966.124ENSCLAG00000005185-9966.124Chinchilla_lanigera
ENSLOCG00000006397rpa19956.634ENSCSAG00000013833RPA19956.796Chlorocebus_sabaeus
ENSLOCG00000006397rpa19566.553ENSCHOG00000013540-9966.553Choloepus_hoffmanni
ENSLOCG00000006397rpa17274.142ENSCHOG00000009454-9974.142Choloepus_hoffmanni
ENSLOCG00000006397rpa19966.340ENSCPBG00000020377RPA19967.958Chrysemys_picta_bellii
ENSLOCG00000006397rpa19944.007ENSCING00000023482-9944.007Ciona_intestinalis
ENSLOCG00000006397rpa19668.151ENSCANG00000030911RPA19868.151Colobus_angolensis_palliatus
ENSLOCG00000006397rpa19966.019ENSCGRG00001008197Rpa19966.181Cricetulus_griseus_chok1gshd
ENSLOCG00000006397rpa18167.850ENSCGRG00000000582Rpa19968.047Cricetulus_griseus_crigri
ENSLOCG00000006397rpa19953.333ENSCSEG00000012726RPA19954.017Cynoglossus_semilaevis
ENSLOCG00000006397rpa19968.361ENSCSEG00000013066rpa19968.361Cynoglossus_semilaevis
ENSLOCG00000006397rpa19663.974ENSCVAG00000013446-9363.974Cyprinodon_variegatus
ENSLOCG00000006397rpa19971.808ENSCVAG00000019431rpa19972.857Cyprinodon_variegatus
ENSLOCG00000006397rpa110069.687ENSDARG00000003938rpa110069.687Danio_rerio
ENSLOCG00000006397rpa19867.987ENSDNOG00000017218RPA19867.987Dasypus_novemcinctus
ENSLOCG00000006397rpa19967.264ENSDORG00000006199Rpa19967.264Dipodomys_ordii
ENSLOCG00000006397rpa19843.261FBgn0010173RpA-709743.594Drosophila_melanogaster
ENSLOCG00000006397rpa18278.351ENSETEG00000017608RPA18278.351Echinops_telfairi
ENSLOCG00000006397rpa19668.074ENSEASG00005009372RPA19968.310Equus_asinus_asinus
ENSLOCG00000006397rpa19967.101ENSECAG00000023886RPA19967.101Equus_caballus
ENSLOCG00000006397rpa16972.792ENSEEUG00000002186-6872.792Erinaceus_europaeus
ENSLOCG00000006397rpa19971.148ENSELUG00000021071rpa19971.148Esox_lucius
ENSLOCG00000006397rpa18859.586ENSELUG00000006136RPA19959.586Esox_lucius
ENSLOCG00000006397rpa19967.317ENSFCAG00000006306RPA19967.317Felis_catus
ENSLOCG00000006397rpa19965.033ENSFALG00000006575RPA19965.033Ficedula_albicollis
ENSLOCG00000006397rpa19966.558ENSFDAG00000007720RPA19966.558Fukomys_damarensis
ENSLOCG00000006397rpa19970.481ENSFHEG00000003580rpa19970.481Fundulus_heteroclitus
ENSLOCG00000006397rpa19967.276ENSGMOG00000010382rpa19967.110Gadus_morhua
ENSLOCG00000006397rpa19964.484ENSGALG00000003072RPA19964.484Gallus_gallus
ENSLOCG00000006397rpa19958.689ENSGAFG00000020953RPA19958.689Gambusia_affinis
ENSLOCG00000006397rpa19971.285ENSGAFG00000012916rpa19971.285Gambusia_affinis
ENSLOCG00000006397rpa19969.320ENSGACG00000010856rpa19969.154Gasterosteus_aculeatus
ENSLOCG00000006397rpa19966.340ENSGAGG00000013611RPA19966.340Gopherus_agassizii
ENSLOCG00000006397rpa19966.941ENSGGOG00000014186RPA19966.941Gorilla_gorilla
ENSLOCG00000006397rpa19973.884ENSHBUG00000017773rpa19973.597Haplochromis_burtoni
ENSLOCG00000006397rpa19554.932ENSHBUG00000009348RPA19854.762Haplochromis_burtoni
ENSLOCG00000006397rpa19966.071ENSHGLG00000008846RPA110066.287Heterocephalus_glaber_female
ENSLOCG00000006397rpa19962.052ENSHGLG00100000799-9962.052Heterocephalus_glaber_male
ENSLOCG00000006397rpa19966.071ENSHGLG00100017755-10066.287Heterocephalus_glaber_male
ENSLOCG00000006397rpa19955.949ENSHGLG00100002005-9956.129Heterocephalus_glaber_male
ENSLOCG00000006397rpa19968.637ENSHCOG00000001401rpa19969.067Hippocampus_comes
ENSLOCG00000006397rpa19944.918ENSHCOG00000000351RPA19944.918Hippocampus_comes
ENSLOCG00000006397rpa110070.588ENSIPUG00000004400rpa110070.588Ictalurus_punctatus
ENSLOCG00000006397rpa19267.018ENSSTOG00000022475RPA19567.018Ictidomys_tridecemlineatus
ENSLOCG00000006397rpa19568.654ENSJJAG00000000876Rpa19868.654Jaculus_jaculus
ENSLOCG00000006397rpa19969.885ENSKMAG00000005605rpa19970.888Kryptolebias_marmoratus
ENSLOCG00000006397rpa19960.591ENSKMAG00000000234RPA19960.427Kryptolebias_marmoratus
ENSLOCG00000006397rpa19767.043ENSLBEG00000002281RPA18367.043Labrus_bergylta
ENSLOCG00000006397rpa19970.033ENSLBEG00000021604rpa19969.917Labrus_bergylta
ENSLOCG00000006397rpa18162.626ENSLACG00000007210RPA19962.626Latimeria_chalumnae
ENSLOCG00000006397rpa19667.833ENSLAFG00000015354RPA110064.541Loxodonta_africana
ENSLOCG00000006397rpa18066.397ENSMFAG00000036138-9866.599Macaca_fascicularis
ENSLOCG00000006397rpa19962.295ENSMMUG00000002442-9962.295Macaca_mulatta
ENSLOCG00000006397rpa19967.381ENSMMUG00000011604-9868.581Macaca_mulatta
ENSLOCG00000006397rpa19667.572ENSMNEG00000031632-9867.742Macaca_nemestrina
ENSLOCG00000006397rpa19956.908ENSMNEG00000029837-9956.908Macaca_nemestrina
ENSLOCG00000006397rpa19664.094ENSMLEG00000038768-9864.262Mandrillus_leucophaeus
ENSLOCG00000006397rpa19972.112ENSMAMG00000017993rpa19971.947Mastacembelus_armatus
ENSLOCG00000006397rpa19961.492ENSMAMG00000020097RPA19961.290Mastacembelus_armatus
ENSLOCG00000006397rpa19973.884ENSMZEG00005007551rpa19973.719Maylandia_zebra
ENSLOCG00000006397rpa19960.156ENSMZEG00005024731RPA19960.156Maylandia_zebra
ENSLOCG00000006397rpa19963.907ENSMGAG00000005315RPA19863.907Meleagris_gallopavo
ENSLOCG00000006397rpa19668.136ENSMAUG00000010474Rpa19868.305Mesocricetus_auratus
ENSLOCG00000006397rpa19967.427ENSMICG00000012867RPA19967.427Microcebus_murinus
ENSLOCG00000006397rpa19967.047ENSMOCG00000013019Rpa19967.047Microtus_ochrogaster
ENSLOCG00000006397rpa19861.448ENSMMOG00000010868RPA19861.111Mola_mola
ENSLOCG00000006397rpa110068.801ENSMMOG00000014292rpa19970.427Mola_mola
ENSLOCG00000006397rpa110066.234ENSMODG00000010549RPA19966.234Monodelphis_domestica
ENSLOCG00000006397rpa19962.551ENSMALG00000001208RPA18862.146Monopterus_albus
ENSLOCG00000006397rpa19971.973ENSMALG00000011453rpa19971.973Monopterus_albus
ENSLOCG00000006397rpa19966.721MGP_CAROLIEiJ_G0016734Rpa19967.208Mus_caroli
ENSLOCG00000006397rpa19965.595ENSMUSG00000000751Rpa19965.595Mus_musculus
ENSLOCG00000006397rpa19966.559MGP_PahariEiJ_G0017871Rpa19966.721Mus_pahari
ENSLOCG00000006397rpa19965.490MGP_SPRETEiJ_G0017577Rpa19965.490Mus_spretus
ENSLOCG00000006397rpa19966.450ENSMPUG00000013119RPA19966.450Mustela_putorius_furo
ENSLOCG00000006397rpa19966.184ENSMLUG00000006113RPA19966.184Myotis_lucifugus
ENSLOCG00000006397rpa19567.802ENSNGAG00000004522Rpa19467.802Nannospalax_galili
ENSLOCG00000006397rpa19858.609ENSNBRG00000009672RPA19758.609Neolamprologus_brichardi
ENSLOCG00000006397rpa19473.217ENSNBRG00000020595rpa19973.043Neolamprologus_brichardi
ENSLOCG00000006397rpa19967.264ENSNLEG00000017149RPA19967.752Nomascus_leucogenys
ENSLOCG00000006397rpa19657.699ENSMEUG00000006714RPA19757.699Notamacropus_eugenii
ENSLOCG00000006397rpa19567.395ENSODEG00000009038RPA19667.395Octodon_degus
ENSLOCG00000006397rpa19973.290ENSONIG00000013135rpa19973.008Oreochromis_niloticus
ENSLOCG00000006397rpa19867.550ENSOANG00000010880RPA19967.715Ornithorhynchus_anatinus
ENSLOCG00000006397rpa19964.651ENSOCUG00000001504RPA19964.651Oryctolagus_cuniculus
ENSLOCG00000006397rpa19972.066ENSORLG00000004856rpa19972.185Oryzias_latipes
ENSLOCG00000006397rpa19956.621ENSORLG00000003368RPA19956.469Oryzias_latipes
ENSLOCG00000006397rpa19955.988ENSORLG00020015284RPA19955.838Oryzias_latipes_hni
ENSLOCG00000006397rpa19972.712ENSORLG00020008980rpa19972.546Oryzias_latipes_hni
ENSLOCG00000006397rpa19957.232ENSORLG00015020383RPA19957.076Oryzias_latipes_hsok
ENSLOCG00000006397rpa16668.170ENSORLG00015005867-9167.920Oryzias_latipes_hsok
ENSLOCG00000006397rpa19972.712ENSORLG00015013982rpa19972.546Oryzias_latipes_hsok
ENSLOCG00000006397rpa19561.285ENSOMEG00000011040RPA19961.285Oryzias_melastigma
ENSLOCG00000006397rpa19969.652ENSOMEG00000004704rpa19969.486Oryzias_melastigma
ENSLOCG00000006397rpa19966.775ENSOGAG00000005581-9966.775Otolemur_garnettii
ENSLOCG00000006397rpa19860.000ENSOGAG00000029379-9960.000Otolemur_garnettii
ENSLOCG00000006397rpa19966.992ENSOARG00000014479RPA19967.317Ovis_aries
ENSLOCG00000006397rpa19967.264ENSPPAG00000039680RPA19967.752Pan_paniscus
ENSLOCG00000006397rpa19966.829ENSPPRG00000011807RPA19966.829Panthera_pardus
ENSLOCG00000006397rpa19966.829ENSPTIG00000007898RPA19966.829Panthera_tigris_altaica
ENSLOCG00000006397rpa19967.590ENSPTRG00000008539RPA19968.078Pan_troglodytes
ENSLOCG00000006397rpa19966.992ENSPANG00000024592RPA19967.154Papio_anubis
ENSLOCG00000006397rpa19969.142ENSPKIG00000008053rpa19969.142Paramormyrops_kingsleyae
ENSLOCG00000006397rpa19667.174ENSPSIG00000015617RPA19867.174Pelodiscus_sinensis
ENSLOCG00000006397rpa19969.435ENSPMGG00000011589rpa19969.435Periophthalmus_magnuspinnatus
ENSLOCG00000006397rpa19958.728ENSPMGG00000000543RPA19962.100Periophthalmus_magnuspinnatus
ENSLOCG00000006397rpa19967.537ENSPEMG00000021061Rpa19967.537Peromyscus_maniculatus_bairdii
ENSLOCG00000006397rpa19965.747ENSPCIG00000019049RPA19965.747Phascolarctos_cinereus
ENSLOCG00000006397rpa19971.786ENSPFOG00000003987rpa19971.786Poecilia_formosa
ENSLOCG00000006397rpa19971.452ENSPLAG00000004984rpa19971.452Poecilia_latipinna
ENSLOCG00000006397rpa19458.039ENSPLAG00000008844-9758.039Poecilia_latipinna
ENSLOCG00000006397rpa19971.953ENSPMEG00000020602rpa19972.093Poecilia_mexicana
ENSLOCG00000006397rpa19457.997ENSPMEG00000003627-9757.997Poecilia_mexicana
ENSLOCG00000006397rpa19956.889ENSPREG00000010119RPA110056.522Poecilia_reticulata
ENSLOCG00000006397rpa19364.362ENSPREG00000010174rpa19663.492Poecilia_reticulata
ENSLOCG00000006397rpa19967.427ENSPCOG00000001799RPA19967.427Propithecus_coquereli
ENSLOCG00000006397rpa19966.450ENSPVAG00000002149RPA19966.450Pteropus_vampyrus
ENSLOCG00000006397rpa19974.050ENSPNYG00000016316rpa19973.884Pundamilia_nyererei
ENSLOCG00000006397rpa19960.000ENSPNYG00000024165RPA19960.000Pundamilia_nyererei
ENSLOCG00000006397rpa19964.274ENSPNAG00000008599rpa110062.945Pygocentrus_nattereri
ENSLOCG00000006397rpa19672.464ENSRNOG00000003123Rpa19967.863Rattus_norvegicus
ENSLOCG00000006397rpa19967.154ENSRBIG00000036587RPA19967.154Rhinopithecus_bieti
ENSLOCG00000006397rpa19962.114ENSRROG00000043278RPA19962.114Rhinopithecus_roxellana
ENSLOCG00000006397rpa19432.470YAR007CRFA19332.021Saccharomyces_cerevisiae
ENSLOCG00000006397rpa19169.107ENSSBOG00000030233RPA19769.286Saimiri_boliviensis_boliviensis
ENSLOCG00000006397rpa19966.285ENSSHAG00000007969RPA19866.939Sarcophilus_harrisii
ENSLOCG00000006397rpa110073.884ENSSFOG00015005362rpa19273.884Scleropages_formosus
ENSLOCG00000006397rpa19957.553ENSSMAG00000019746RPA110057.402Scophthalmus_maximus
ENSLOCG00000006397rpa19269.977ENSSDUG00000016358RPA19663.022Seriola_dumerili
ENSLOCG00000006397rpa19972.893ENSSDUG00000011949rpa19972.607Seriola_dumerili
ENSLOCG00000006397rpa19269.746ENSSLDG00000020784RPA19863.434Seriola_lalandi_dorsalis
ENSLOCG00000006397rpa19972.937ENSSLDG00000011806rpa19972.772Seriola_lalandi_dorsalis
ENSLOCG00000006397rpa18572.727ENSSARG00000007506RPA18772.727Sorex_araneus
ENSLOCG00000006397rpa19665.646ENSSPUG00000007223RPA19865.646Sphenodon_punctatus
ENSLOCG00000006397rpa19972.727ENSSPAG00000009903rpa19972.562Stegastes_partitus
ENSLOCG00000006397rpa19861.564ENSSPAG00000011165RPA110060.396Stegastes_partitus
ENSLOCG00000006397rpa19966.557ENSSSCG00000017822RPA19868.581Sus_scrofa
ENSLOCG00000006397rpa19965.246ENSTGUG00000005775RPA19965.246Taeniopygia_guttata
ENSLOCG00000006397rpa19970.333ENSTRUG00000003616rpa19970.167Takifugu_rubripes
ENSLOCG00000006397rpa19068.852ENSTRUG00000000405RPA18960.588Takifugu_rubripes
ENSLOCG00000006397rpa19971.686ENSTNIG00000016199rpa19971.686Tetraodon_nigroviridis
ENSLOCG00000006397rpa17273.409ENSTBEG00000002709RPA17473.409Tupaia_belangeri
ENSLOCG00000006397rpa19966.179ENSTTRG00000001169RPA19966.341Tursiops_truncatus
ENSLOCG00000006397rpa18680.769ENSUAMG00000015676RPA19580.769Ursus_americanus
ENSLOCG00000006397rpa19966.124ENSUMAG00000009328RPA19966.450Ursus_maritimus
ENSLOCG00000006397rpa19966.063ENSVPAG00000009443RPA19966.063Vicugna_pacos
ENSLOCG00000006397rpa19966.450ENSVVUG00000021715RPA19966.450Vulpes_vulpes
ENSLOCG00000006397rpa110068.464ENSXETG00000013538rpa19969.193Xenopus_tropicalis
ENSLOCG00000006397rpa19560.208ENSXCOG00000009899-9960.208Xiphophorus_couchianus
ENSLOCG00000006397rpa19369.489ENSXCOG00000010068rpa19469.763Xiphophorus_couchianus
ENSLOCG00000006397rpa19467.720ENSXMAG00000010333RPA18467.720Xiphophorus_maculatus
ENSLOCG00000006397rpa19970.216ENSXMAG00000004102rpa19971.071Xiphophorus_maculatus

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