EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000006448 (Gene tree)
Gene ID: 102694323
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 72327 bases
Position: chrLG22:10172716-10245042
Accession: 102694323
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000007801	EST1	PF10374.9	8.3e-16	1	1
ENSLOCP00000007801	EST1_DNA_bind	PF10373.9	1e-58	1	1
ENSLOCP00000007801	PIN_4	PF13638.6	1.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000007811	-	4122	XM_006641102	ENSLOCP00000007801	1367 (aa)	-	W5MHE2

Gene Model

Click here to download ENSLOCG00000006448's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000006448's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000006448	smg6	100	55.261	ENSG00000070366	SMG6	100	67.823	Homo_sapiens
ENSLOCG00000006448	smg6	99	56.386	ENSAPOG00000019448	smg6	67	66.370	Acanthochromis_polyacanthus
ENSLOCG00000006448	smg6	99	55.096	ENSAMEG00000007632	SMG6	73	65.388	Ailuropoda_melanoleuca
ENSLOCG00000006448	smg6	76	66.636	ENSACIG00000012997	smg6	72	65.489	Amphilophus_citrinellus
ENSLOCG00000006448	smg6	99	56.737	ENSAOCG00000002630	smg6	67	66.904	Amphiprion_ocellaris
ENSLOCG00000006448	smg6	99	56.568	ENSAPEG00000019101	smg6	67	66.726	Amphiprion_percula
ENSLOCG00000006448	smg6	99	55.166	ENSATEG00000006483	smg6	66	64.349	Anabas_testudineus
ENSLOCG00000006448	smg6	99	54.959	ENSANAG00000035760	SMG6	73	65.414	Aotus_nancymaae
ENSLOCG00000006448	smg6	85	66.983	ENSAMXG00000017326	smg6	80	66.765	Astyanax_mexicanus
ENSLOCG00000006448	smg6	99	55.517	ENSBTAG00000000267	SMG6	72	66.255	Bos_taurus
ENSLOCG00000006448	smg6	99	54.832	ENSCJAG00000001820	SMG6	72	66.476	Callithrix_jacchus
ENSLOCG00000006448	smg6	99	54.539	ENSCAFG00000019260	SMG6	73	65.388	Canis_familiaris
ENSLOCG00000006448	smg6	99	54.539	ENSCAFG00020009770	SMG6	73	65.388	Canis_lupus_dingo
ENSLOCG00000006448	smg6	99	55.640	ENSCHIG00000021998	SMG6	73	65.575	Capra_hircus
ENSLOCG00000006448	smg6	99	54.198	ENSTSYG00000003406	SMG6	100	68.015	Carlito_syrichta
ENSLOCG00000006448	smg6	99	44.706	ENSCAPG00000016197	SMG6	69	60.628	Cavia_aperea
ENSLOCG00000006448	smg6	99	53.687	ENSCPOG00000014878	SMG6	98	64.286	Cavia_porcellus
ENSLOCG00000006448	smg6	99	54.928	ENSCCAG00000035801	SMG6	73	65.320	Cebus_capucinus
ENSLOCG00000006448	smg6	100	54.955	ENSCATG00000031956	SMG6	73	65.108	Cercocebus_atys
ENSLOCG00000006448	smg6	99	54.814	ENSCLAG00000006748	SMG6	93	67.111	Chinchilla_lanigera
ENSLOCG00000006448	smg6	100	55.301	ENSCSAG00000013800	SMG6	73	65.575	Chlorocebus_sabaeus
ENSLOCG00000006448	smg6	99	54.810	ENSCPBG00000020369	SMG6	72	65.201	Chrysemys_picta_bellii
ENSLOCG00000006448	smg6	100	55.024	ENSCANG00000031764	SMG6	100	68.208	Colobus_angolensis_palliatus
ENSLOCG00000006448	smg6	99	55.369	ENSCSEG00000012757	smg6	70	65.461	Cynoglossus_semilaevis
ENSLOCG00000006448	smg6	86	60.032	ENSDNOG00000048283	SMG6	73	65.079	Dasypus_novemcinctus
ENSLOCG00000006448	smg6	99	51.915	ENSDORG00000016614	Smg6	97	65.401	Dipodomys_ordii
ENSLOCG00000006448	smg6	93	87.805	ENSETEG00000016790	SMG6	67	87.805	Echinops_telfairi
ENSLOCG00000006448	smg6	69	50.249	ENSEBUG00000005059	smg6	63	50.200	Eptatretus_burgeri
ENSLOCG00000006448	smg6	86	60.338	ENSEASG00005009318	SMG6	73	65.323	Equus_asinus_asinus
ENSLOCG00000006448	smg6	86	60.467	ENSECAG00000006519	SMG6	71	66.095	Equus_caballus
ENSLOCG00000006448	smg6	99	47.642	ENSEEUG00000003493	SMG6	72	56.042	Erinaceus_europaeus
ENSLOCG00000006448	smg6	100	67.112	ENSELUG00000005934	smg6	69	67.289	Esox_lucius
ENSLOCG00000006448	smg6	99	55.325	ENSFCAG00000028817	SMG6	73	65.575	Felis_catus
ENSLOCG00000006448	smg6	99	55.817	ENSFALG00000006538	SMG6	74	66.103	Ficedula_albicollis
ENSLOCG00000006448	smg6	99	54.501	ENSFDAG00000015106	SMG6	95	64.348	Fukomys_damarensis
ENSLOCG00000006448	smg6	100	54.534	ENSFHEG00000013282	smg6	67	63.419	Fundulus_heteroclitus
ENSLOCG00000006448	smg6	55	72.897	ENSGMOG00000019077	smg6	58	72.897	Gadus_morhua
ENSLOCG00000006448	smg6	90	61.778	ENSGACG00000020521	smg6	83	66.299	Gasterosteus_aculeatus
ENSLOCG00000006448	smg6	99	55.563	ENSGAGG00000025617	SMG6	74	64.640	Gopherus_agassizii
ENSLOCG00000006448	smg6	100	54.955	ENSGGOG00000017156	SMG6	73	65.201	Gorilla_gorilla
ENSLOCG00000006448	smg6	99	55.166	ENSHBUG00000021311	smg6	67	65.085	Haplochromis_burtoni
ENSLOCG00000006448	smg6	86	59.710	ENSHGLG00000012882	SMG6	94	66.372	Heterocephalus_glaber_female
ENSLOCG00000006448	smg6	86	59.742	ENSHGLG00100017815	SMG6	94	66.372	Heterocephalus_glaber_male
ENSLOCG00000006448	smg6	75	64.272	ENSHCOG00000008761	smg6	79	64.741	Hippocampus_comes
ENSLOCG00000006448	smg6	99	56.267	ENSIPUG00000012493	smg6	67	63.960	Ictalurus_punctatus
ENSLOCG00000006448	smg6	99	54.627	ENSSTOG00000028127	SMG6	100	63.333	Ictidomys_tridecemlineatus
ENSLOCG00000006448	smg6	78	49.782	ENSJJAG00000015367	Smg6	65	59.556	Jaculus_jaculus
ENSLOCG00000006448	smg6	100	54.581	ENSKMAG00000000279	smg6	67	65.085	Kryptolebias_marmoratus
ENSLOCG00000006448	smg6	87	61.593	ENSLBEG00000002184	smg6	66	65.217	Labrus_bergylta
ENSLOCG00000006448	smg6	55	47.468	ENSLACG00000000806	-	58	62.551	Latimeria_chalumnae
ENSLOCG00000006448	smg6	99	54.244	ENSLAFG00000001261	SMG6	74	64.591	Loxodonta_africana
ENSLOCG00000006448	smg6	100	55.301	ENSMFAG00000003394	SMG6	73	65.575	Macaca_fascicularis
ENSLOCG00000006448	smg6	100	55.232	ENSMMUG00000023161	SMG6	73	65.482	Macaca_mulatta
ENSLOCG00000006448	smg6	100	53.755	ENSMNEG00000044592	SMG6	73	63.346	Macaca_nemestrina
ENSLOCG00000006448	smg6	95	69.074	ENSMLEG00000029353	SMG6	73	69.074	Mandrillus_leucophaeus
ENSLOCG00000006448	smg6	99	55.134	ENSMAMG00000020119	smg6	71	65.862	Mastacembelus_armatus
ENSLOCG00000006448	smg6	89	59.563	ENSMICG00000012913	SMG6	72	66.380	Microcebus_murinus
ENSLOCG00000006448	smg6	99	56.747	ENSMMOG00000010883	smg6	70	64.551	Mola_mola
ENSLOCG00000006448	smg6	99	56.588	ENSMODG00000010622	SMG6	72	66.255	Monodelphis_domestica
ENSLOCG00000006448	smg6	99	55.098	ENSMALG00000001106	smg6	66	64.978	Monopterus_albus
ENSLOCG00000006448	smg6	99	54.026	MGP_CAROLIEiJ_G0016729	Smg6	97	67.614	Mus_caroli
ENSLOCG00000006448	smg6	99	53.905	MGP_PahariEiJ_G0017866	Smg6	97	67.816	Mus_pahari
ENSLOCG00000006448	smg6	86	59.968	MGP_SPRETEiJ_G0017572	Smg6	97	68.300	Mus_spretus
ENSLOCG00000006448	smg6	99	55.725	ENSMPUG00000013046	SMG6	73	65.295	Mustela_putorius_furo
ENSLOCG00000006448	smg6	99	53.702	ENSNGAG00000007287	Smg6	100	62.083	Nannospalax_galili
ENSLOCG00000006448	smg6	99	54.564	ENSNBRG00000009511	smg6	70	65.014	Neolamprologus_brichardi
ENSLOCG00000006448	smg6	99	54.907	ENSNLEG00000017171	SMG6	100	67.823	Nomascus_leucogenys
ENSLOCG00000006448	smg6	86	60.081	ENSMEUG00000015804	SMG6	73	65.425	Notamacropus_eugenii
ENSLOCG00000006448	smg6	58	71.751	ENSOPRG00000000579	SMG6	80	72.131	Ochotona_princeps
ENSLOCG00000006448	smg6	99	48.939	ENSODEG00000008038	SMG6	84	59.763	Octodon_degus
ENSLOCG00000006448	smg6	99	57.454	ENSONIG00000005594	smg6	76	66.395	Oreochromis_niloticus
ENSLOCG00000006448	smg6	99	55.192	ENSOCUG00000013018	SMG6	74	65.181	Oryctolagus_cuniculus
ENSLOCG00000006448	smg6	99	54.467	ENSOMEG00000010838	smg6	66	64.749	Oryzias_melastigma
ENSLOCG00000006448	smg6	99	55.319	ENSOGAG00000004483	SMG6	74	65.342	Otolemur_garnettii
ENSLOCG00000006448	smg6	99	55.571	ENSOARG00000015076	SMG6	75	65.482	Ovis_aries
ENSLOCG00000006448	smg6	100	55.024	ENSPPAG00000043296	SMG6	73	65.201	Pan_paniscus
ENSLOCG00000006448	smg6	99	55.325	ENSPPRG00000014581	SMG6	73	65.575	Panthera_pardus
ENSLOCG00000006448	smg6	99	55.325	ENSPTIG00000008925	SMG6	100	68.401	Panthera_tigris_altaica
ENSLOCG00000006448	smg6	100	54.955	ENSPTRG00000008544	SMG6	100	67.823	Pan_troglodytes
ENSLOCG00000006448	smg6	99	55.182	ENSPANG00000024588	SMG6	73	65.482	Papio_anubis
ENSLOCG00000006448	smg6	90	51.827	ENSPSIG00000006660	SMG6	68	62.753	Pelodiscus_sinensis
ENSLOCG00000006448	smg6	93	68.493	ENSPMGG00000000844	smg6	74	65.498	Periophthalmus_magnuspinnatus
ENSLOCG00000006448	smg6	86	59.903	ENSPEMG00000020707	Smg6	98	64.224	Peromyscus_maniculatus_bairdii
ENSLOCG00000006448	smg6	100	56.620	ENSPFOG00000012035	smg6	75	65.938	Poecilia_formosa
ENSLOCG00000006448	smg6	100	55.056	ENSPLAG00000017660	smg6	67	64.343	Poecilia_latipinna
ENSLOCG00000006448	smg6	100	55.364	ENSPMEG00000000258	smg6	67	64.611	Poecilia_mexicana
ENSLOCG00000006448	smg6	86	56.090	ENSPPYG00000007790	SMG6	73	59.497	Pongo_abelii
ENSLOCG00000006448	smg6	87	57.029	ENSPCAG00000000552	SMG6	73	61.776	Procavia_capensis
ENSLOCG00000006448	smg6	89	59.098	ENSPCOG00000020925	SMG6	73	65.108	Propithecus_coquereli
ENSLOCG00000006448	smg6	81	68.924	ENSPVAG00000002159	SMG6	73	61.179	Pteropus_vampyrus
ENSLOCG00000006448	smg6	87	59.483	ENSPNAG00000015480	smg6	88	71.223	Pygocentrus_nattereri
ENSLOCG00000006448	smg6	99	54.351	ENSRNOG00000003041	Smg6	97	68.391	Rattus_norvegicus
ENSLOCG00000006448	smg6	100	55.232	ENSRBIG00000024746	SMG6	73	65.482	Rhinopithecus_bieti
ENSLOCG00000006448	smg6	100	55.232	ENSRROG00000030423	SMG6	100	68.015	Rhinopithecus_roxellana
ENSLOCG00000006448	smg6	86	60.420	ENSSBOG00000022518	SMG6	73	63.440	Saimiri_boliviensis_boliviensis
ENSLOCG00000006448	smg6	99	55.671	ENSSHAG00000010045	SMG6	74	64.875	Sarcophilus_harrisii
ENSLOCG00000006448	smg6	99	55.253	ENSSMAG00000019777	smg6	66	65.062	Scophthalmus_maximus
ENSLOCG00000006448	smg6	99	56.771	ENSSDUG00000016412	smg6	66	66.191	Seriola_dumerili
ENSLOCG00000006448	smg6	97	55.861	ENSSLDG00000020747	smg6	69	65.306	Seriola_lalandi_dorsalis
ENSLOCG00000006448	smg6	89	59.533	ENSSSCG00000017826	SMG6	73	65.295	Sus_scrofa
ENSLOCG00000006448	smg6	99	55.318	ENSTGUG00000005836	SMG6	97	54.376	Taeniopygia_guttata
ENSLOCG00000006448	smg6	100	56.543	ENSTRUG00000000358	smg6	73	64.706	Takifugu_rubripes
ENSLOCG00000006448	smg6	79	64.192	ENSTNIG00000016164	smg6	75	64.870	Tetraodon_nigroviridis
ENSLOCG00000006448	smg6	82	69.895	ENSTBEG00000011424	SMG6	69	71.274	Tupaia_belangeri
ENSLOCG00000006448	smg6	90	63.056	ENSTTRG00000001175	SMG6	63	63.056	Tursiops_truncatus
ENSLOCG00000006448	smg6	99	55.301	ENSUAMG00000025152	SMG6	75	65.295	Ursus_americanus
ENSLOCG00000006448	smg6	99	55.301	ENSUMAG00000009306	SMG6	75	65.295	Ursus_maritimus
ENSLOCG00000006448	smg6	84	96.296	ENSVPAG00000000225	SMG6	60	96.296	Vicugna_pacos
ENSLOCG00000006448	smg6	99	55.657	ENSVVUG00000021727	SMG6	77	65.028	Vulpes_vulpes
ENSLOCG00000006448	smg6	86	57.533	ENSXETG00000023799	SMG6	75	60.189	Xenopus_tropicalis
ENSLOCG00000006448	smg6	77	64.461	ENSXCOG00000009867	smg6	67	63.826	Xiphophorus_couchianus