EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000006476 (Gene tree)
Gene ID: 102696832
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein A1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 7401 bases
Position: chrLG4:16109496-16116896
Accession: 102696832
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000007823	RRM_1	PF00076.22	7e-36	1	2
ENSLOCP00000007823	RRM_1	PF00076.22	7e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000007833	-	2751	XM_006629274	ENSLOCP00000007823	367 (aa)	XP_006629337	W5MHG4

Gene Model

Click here to download ENSLOCG00000006476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000006476's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000006476	-	92	39.412	ENSLOCG00000010736	hnrnpdl	55	39.412
ENSLOCG00000006476	-	53	39.303	ENSLOCG00000010743	hnrnpd	56	40.331
ENSLOCG00000006476	-	51	81.481	ENSLOCG00000006986	hnrnpa3	54	81.915
ENSLOCG00000006476	-	53	40.984	ENSLOCG00000004675	msi2b	64	48.718

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000006476	-	50	81.421	ENSAPOG00000003641	hnrnpa3	73	81.421	Acanthochromis_polyacanthus
ENSLOCG00000006476	-	62	55.505	ENSAPOG00000003387	HNRNPA0	62	60.335	Acanthochromis_polyacanthus
ENSLOCG00000006476	-	50	81.081	ENSAPOG00000014678	-	54	81.081	Acanthochromis_polyacanthus
ENSLOCG00000006476	-	50	81.081	ENSAPOG00000003688	hnrnpa3	52	81.081	Acanthochromis_polyacanthus
ENSLOCG00000006476	-	50	57.065	ENSAMEG00000016316	HNRNPA0	59	58.791	Ailuropoda_melanoleuca
ENSLOCG00000006476	-	51	59.218	ENSACIG00000021834	HNRNPA0	79	59.218	Amphilophus_citrinellus
ENSLOCG00000006476	-	55	78.325	ENSATEG00000015304	hnrnpa3	57	79.058	Anabas_testudineus
ENSLOCG00000006476	-	50	54.945	ENSATEG00000003526	-	96	54.945	Anabas_testudineus
ENSLOCG00000006476	-	51	81.967	ENSANAG00000037918	-	54	82.065	Aotus_nancymaae
ENSLOCG00000006476	-	56	48.293	ENSACLG00000008973	HNRNPA0	56	50.279	Astatotilapia_calliptera
ENSLOCG00000006476	-	55	79.803	ENSACLG00000008532	hnrnpa3	56	80.749	Astatotilapia_calliptera
ENSLOCG00000006476	-	50	81.421	ENSAMXG00000007065	hnrnpa3	53	79.787	Astyanax_mexicanus
ENSLOCG00000006476	-	54	78.788	ENSCJAG00000013830	-	51	80.435	Callithrix_jacchus
ENSLOCG00000006476	-	51	73.224	ENSCATG00000038569	-	51	73.370	Cercocebus_atys
ENSLOCG00000006476	-	67	50.407	ENSCPBG00000008738	HNRNPA0	59	59.341	Chrysemys_picta_bellii
ENSLOCG00000006476	-	50	81.967	ENSCANG00000017881	-	51	80.423	Colobus_angolensis_palliatus
ENSLOCG00000006476	-	50	76.630	ENSCGRG00000003686	-	74	63.025	Cricetulus_griseus_crigri
ENSLOCG00000006476	-	54	80.203	ENSCVAG00000018995	hnrnpa3	52	83.240	Cyprinodon_variegatus
ENSLOCG00000006476	-	50	81.967	ENSDARG00000059351	hnrnpa3	78	80.319	Danio_rerio
ENSLOCG00000006476	-	50	69.945	ENSETEG00000007747	-	64	70.109	Echinops_telfairi
ENSLOCG00000006476	-	50	73.656	ENSEBUG00000016570	HNRNPA0	53	74.444	Eptatretus_burgeri
ENSLOCG00000006476	-	90	59.091	ENSELUG00000023080	hnrnpa3	63	80.435	Esox_lucius
ENSLOCG00000006476	-	50	67.582	ENSFDAG00000014067	-	54	67.760	Fukomys_damarensis
ENSLOCG00000006476	-	54	56.061	ENSFDAG00000009547	-	57	49.784	Fukomys_damarensis
ENSLOCG00000006476	-	50	65.027	ENSFDAG00000018739	-	65	65.217	Fukomys_damarensis
ENSLOCG00000006476	-	51	56.983	ENSGMOG00000016232	HNRNPA0	64	56.667	Gadus_morhua
ENSLOCG00000006476	-	75	65.343	ENSGACG00000004477	hnrnpa3	62	78.075	Gasterosteus_aculeatus
ENSLOCG00000006476	-	55	79.310	ENSHBUG00000019734	hnrnpa3	56	80.214	Haplochromis_burtoni
ENSLOCG00000006476	-	51	59.444	ENSHBUG00000023868	HNRNPA0	70	59.777	Haplochromis_burtoni
ENSLOCG00000006476	-	63	64.807	ENSHGLG00000014577	-	74	60.870	Heterocephalus_glaber_female
ENSLOCG00000006476	-	54	77.157	ENSHGLG00100001336	-	53	76.720	Heterocephalus_glaber_male
ENSLOCG00000006476	-	54	80.303	ENSHGLG00100006677	-	57	82.065	Heterocephalus_glaber_male
ENSLOCG00000006476	-	50	58.084	ENSHCOG00000007174	HNRNPA0	95	58.084	Hippocampus_comes
ENSLOCG00000006476	-	50	81.421	ENSIPUG00000019815	RO32	54	82.320	Ictalurus_punctatus
ENSLOCG00000006476	-	78	47.766	ENSJJAG00000006954	Hnrnpa0	62	58.242	Jaculus_jaculus
ENSLOCG00000006476	-	55	78.325	ENSKMAG00000015973	hnrnpa3	55	81.081	Kryptolebias_marmoratus
ENSLOCG00000006476	-	55	77.833	ENSLBEG00000016767	hnrnpa3	56	80.214	Labrus_bergylta
ENSLOCG00000006476	-	50	59.429	ENSLACG00000014480	HNRNPA0	59	59.429	Latimeria_chalumnae
ENSLOCG00000006476	-	55	77.674	ENSLACG00000008189	hnrnpa3	53	83.158	Latimeria_chalumnae
ENSLOCG00000006476	-	51	85.350	ENSLAFG00000027712	-	58	85.350	Loxodonta_africana
ENSLOCG00000006476	-	51	72.432	ENSMMUG00000031232	-	51	72.581	Macaca_mulatta
ENSLOCG00000006476	-	57	65.116	ENSMNEG00000038943	-	74	70.109	Macaca_nemestrina
ENSLOCG00000006476	-	51	71.585	ENSMLEG00000033415	-	53	70.370	Mandrillus_leucophaeus
ENSLOCG00000006476	-	65	53.017	ENSMAMG00000017754	HNRNPA0	71	59.890	Mastacembelus_armatus
ENSLOCG00000006476	-	54	81.726	ENSMZEG00005004663	hnrnpa3	55	81.967	Maylandia_zebra
ENSLOCG00000006476	-	56	48.293	ENSMZEG00005001055	HNRNPA0	56	50.279	Maylandia_zebra
ENSLOCG00000006476	-	54	73.232	ENSMODG00000024570	-	51	74.457	Monodelphis_domestica
ENSLOCG00000006476	-	50	56.044	ENSMODG00000002463	-	97	56.044	Monodelphis_domestica
ENSLOCG00000006476	-	50	57.609	ENSMODG00000014720	HNRNPA0	72	56.915	Monodelphis_domestica
ENSLOCG00000006476	-	93	56.851	ENSMALG00000009691	hnrnpa3	75	82.682	Monopterus_albus
ENSLOCG00000006476	-	50	79.781	ENSNLEG00000027151	-	54	78.307	Nomascus_leucogenys
ENSLOCG00000006476	-	51	50.538	ENSORLG00000027074	-	83	50.538	Oryzias_latipes
ENSLOCG00000006476	-	54	79.695	ENSORLG00000017561	hnrnpa3	54	80.541	Oryzias_latipes
ENSLOCG00000006476	-	93	40.988	ENSORLG00020007109	-	58	50.549	Oryzias_latipes_hni
ENSLOCG00000006476	-	54	79.695	ENSORLG00020020788	hnrnpa3	54	80.541	Oryzias_latipes_hni
ENSLOCG00000006476	-	94	37.941	ENSORLG00020022487	-	62	52.542	Oryzias_latipes_hni
ENSLOCG00000006476	-	81	43.581	ENSORLG00020007505	-	58	51.724	Oryzias_latipes_hni
ENSLOCG00000006476	-	81	43.051	ENSORLG00020008203	-	58	51.445	Oryzias_latipes_hni
ENSLOCG00000006476	-	77	44.097	ENSORLG00015017144	-	59	52.247	Oryzias_latipes_hsok
ENSLOCG00000006476	-	74	44.776	ENSORLG00015016169	HNRNPA0	59	51.149	Oryzias_latipes_hsok
ENSLOCG00000006476	-	51	50.000	ENSORLG00015016157	-	62	51.429	Oryzias_latipes_hsok
ENSLOCG00000006476	-	62	44.783	ENSORLG00015015182	-	77	52.809	Oryzias_latipes_hsok
ENSLOCG00000006476	-	74	44.238	ENSORLG00015015185	-	59	52.874	Oryzias_latipes_hsok
ENSLOCG00000006476	-	55	77.833	ENSORLG00015014774	hnrnpa3	54	80.541	Oryzias_latipes_hsok
ENSLOCG00000006476	-	73	37.175	ENSORLG00015016236	HNRNPA0	60	45.161	Oryzias_latipes_hsok
ENSLOCG00000006476	-	92	42.478	ENSORLG00015016507	-	55	52.542	Oryzias_latipes_hsok
ENSLOCG00000006476	-	55	78.325	ENSPKIG00000022916	hnrnpa3	67	80.851	Paramormyrops_kingsleyae
ENSLOCG00000006476	-	53	74.490	ENSPMGG00000000747	hnrnpa3	76	75.309	Periophthalmus_magnuspinnatus
ENSLOCG00000006476	-	63	64.224	ENSPMAG00000004449	-	78	76.503	Petromyzon_marinus
ENSLOCG00000006476	-	55	77.833	ENSPFOG00000014049	hnrnpa3	56	80.541	Poecilia_formosa
ENSLOCG00000006476	-	65	47.768	ENSPLAG00000015223	-	57	54.857	Poecilia_latipinna
ENSLOCG00000006476	-	55	77.833	ENSPMEG00000006390	hnrnpa3	56	80.541	Poecilia_mexicana
ENSLOCG00000006476	-	69	69.020	ENSPREG00000005411	hnrnpa3	63	79.058	Poecilia_reticulata
ENSLOCG00000006476	-	51	85.000	ENSPPYG00000012967	-	83	77.174	Pongo_abelii
ENSLOCG00000006476	-	50	81.967	ENSPPYG00000001012	-	59	82.065	Pongo_abelii
ENSLOCG00000006476	-	50	81.868	ENSPNYG00000008424	hnrnpa3	75	83.708	Pundamilia_nyererei
ENSLOCG00000006476	-	50	61.798	ENSPNAG00000023333	HNRNPA0	61	62.011	Pygocentrus_nattereri
ENSLOCG00000006476	-	88	57.231	ENSRROG00000034643	-	54	67.935	Rhinopithecus_roxellana
ENSLOCG00000006476	-	55	92.611	ENSSFOG00015016280	hnrnpa1	56	95.312	Scleropages_formosus
ENSLOCG00000006476	-	54	82.234	ENSSFOG00015001814	hnrnpa3	52	82.447	Scleropages_formosus
ENSLOCG00000006476	-	91	63.988	ENSSMAG00000015218	hnrnpa3	50	77.487	Scophthalmus_maximus
ENSLOCG00000006476	-	55	77.340	ENSSDUG00000000381	hnrnpa3	61	78.010	Seriola_dumerili
ENSLOCG00000006476	-	69	64.683	ENSSPAG00000008969	hnrnpa3	57	79.058	Stegastes_partitus
ENSLOCG00000006476	-	53	64.948	ENSSSCG00000033635	-	51	66.667	Sus_scrofa
ENSLOCG00000006476	-	90	49.857	ENSSSCG00000040926	-	51	66.667	Sus_scrofa
ENSLOCG00000006476	-	68	67.600	ENSTRUG00000017504	hnrnpa3	53	82.123	Takifugu_rubripes
ENSLOCG00000006476	-	54	79.188	ENSTNIG00000016958	hnrnpa3	52	82.682	Tetraodon_nigroviridis
ENSLOCG00000006476	-	51	61.364	ENSXETG00000003833	hnrnpa0	57	61.364	Xenopus_tropicalis
ENSLOCG00000006476	-	63	47.639	ENSXMAG00000029150	HNRNPA0	60	53.804	Xiphophorus_maculatus
ENSLOCG00000006476	-	55	77.833	ENSXMAG00000000439	hnrnpa3	56	80.541	Xiphophorus_maculatus