EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000006675 (Gene tree)
Gene ID: 102687040
Gene Symbol: rbfox1
Alias: a2bp1|zgc:103635
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 71488 bases
Position: chrLG13:12525046-12596533
Accession: 102687040
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000008065	Fox-1_C	PF12414.8	2.5e-43	1	1
ENSLOCP00000008065	RRM_1	PF00076.22	2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000008075	-	3277	XM_006637163	ENSLOCP00000008065	398 (aa)	XP_006637226	W5MI56

Gene Model

Click here to download ENSLOCG00000006675's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000006675's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000006675	rbfox1	98	68.564	ENSLOCG00000012267	rbfox3a	100	71.823

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000006675	rbfox1	99	87.277	ENSG00000078328	RBFOX1	95	92.179	Homo_sapiens
ENSLOCG00000006675	rbfox1	100	76.683	ENSAPOG00000003197	rbfox1	98	77.129	Acanthochromis_polyacanthus
ENSLOCG00000006675	rbfox1	56	89.593	ENSAMEG00000008605	RBFOX1	88	89.593	Ailuropoda_melanoleuca
ENSLOCG00000006675	rbfox1	73	61.371	ENSACIG00000005478	rbfox1	73	61.371	Amphilophus_citrinellus
ENSLOCG00000006675	rbfox1	73	71.290	ENSAOCG00000008283	rbfox1	96	70.968	Amphiprion_ocellaris
ENSLOCG00000006675	rbfox1	95	70.157	ENSAPEG00000010636	rbfox1	100	69.792	Amphiprion_percula
ENSLOCG00000006675	rbfox1	75	68.868	ENSATEG00000007513	rbfox1	96	69.551	Anabas_testudineus
ENSLOCG00000006675	rbfox1	99	89.594	ENSAPLG00000013263	RBFOX1	98	89.594	Anas_platyrhynchos
ENSLOCG00000006675	rbfox1	98	86.260	ENSACAG00000004013	RBFOX1	98	86.260	Anolis_carolinensis
ENSLOCG00000006675	rbfox1	99	86.041	ENSANAG00000029527	RBFOX1	98	85.496	Aotus_nancymaae
ENSLOCG00000006675	rbfox1	56	90.135	ENSAMXG00000002431	rbfox1	73	80.385	Astyanax_mexicanus
ENSLOCG00000006675	rbfox1	98	84.224	ENSBTAG00000007210	RBFOX1	98	84.224	Bos_taurus
ENSLOCG00000006675	rbfox1	99	86.548	ENSCJAG00000017351	RBFOX1	94	86.548	Callithrix_jacchus
ENSLOCG00000006675	rbfox1	99	85.063	ENSCAFG00000019082	RBFOX1	94	84.673	Canis_familiaris
ENSLOCG00000006675	rbfox1	69	83.883	ENSCAFG00020024881	RBFOX1	76	83.333	Canis_lupus_dingo
ENSLOCG00000006675	rbfox1	98	84.733	ENSCHIG00000023549	RBFOX1	98	84.733	Capra_hircus
ENSLOCG00000006675	rbfox1	98	86.189	ENSTSYG00000005334	RBFOX1	100	86.189	Carlito_syrichta
ENSLOCG00000006675	rbfox1	98	86.189	ENSCAPG00000017669	RBFOX1	100	86.189	Cavia_aperea
ENSLOCG00000006675	rbfox1	99	86.005	ENSCPOG00000011314	RBFOX1	99	85.751	Cavia_porcellus
ENSLOCG00000006675	rbfox1	99	86.041	ENSCCAG00000023031	RBFOX1	97	86.041	Cebus_capucinus
ENSLOCG00000006675	rbfox1	99	86.041	ENSCATG00000033816	RBFOX1	97	86.041	Cercocebus_atys
ENSLOCG00000006675	rbfox1	99	86.260	ENSCLAG00000012761	RBFOX1	98	86.260	Chinchilla_lanigera
ENSLOCG00000006675	rbfox1	84	85.030	ENSCSAG00000008739	RBFOX1	88	85.030	Chlorocebus_sabaeus
ENSLOCG00000006675	rbfox1	67	89.552	ENSCHOG00000012843	RBFOX1	64	89.552	Choloepus_hoffmanni
ENSLOCG00000006675	rbfox1	98	90.026	ENSCPBG00000026626	RBFOX1	98	88.041	Chrysemys_picta_bellii
ENSLOCG00000006675	rbfox1	99	86.041	ENSCANG00000033125	RBFOX1	97	86.041	Colobus_angolensis_palliatus
ENSLOCG00000006675	rbfox1	99	86.260	ENSCGRG00001013729	Rbfox1	98	86.260	Cricetulus_griseus_chok1gshd
ENSLOCG00000006675	rbfox1	99	86.260	ENSCGRG00000003272	Rbfox1	98	86.260	Cricetulus_griseus_crigri
ENSLOCG00000006675	rbfox1	95	72.000	ENSCSEG00000008840	rbfox1	100	72.000	Cynoglossus_semilaevis
ENSLOCG00000006675	rbfox1	99	84.010	ENSDARG00000014746	rbfox1	100	89.756	Danio_rerio
ENSLOCG00000006675	rbfox1	99	86.364	ENSDNOG00000043612	RBFOX1	95	86.364	Dasypus_novemcinctus
ENSLOCG00000006675	rbfox1	98	85.063	ENSDORG00000010024	Rbfox1	98	84.000	Dipodomys_ordii
ENSLOCG00000006675	rbfox1	99	71.392	ENSETEG00000003771	RBFOX1	94	71.106	Echinops_telfairi
ENSLOCG00000006675	rbfox1	100	85.930	ENSEASG00005011599	RBFOX1	98	84.987	Equus_asinus_asinus
ENSLOCG00000006675	rbfox1	100	83.960	ENSECAG00000012667	RBFOX1	92	83.896	Equus_caballus
ENSLOCG00000006675	rbfox1	83	70.115	ENSELUG00000013096	rbfox1	97	70.115	Esox_lucius
ENSLOCG00000006675	rbfox1	100	86.181	ENSFCAG00000025322	RBFOX1	91	86.181	Felis_catus
ENSLOCG00000006675	rbfox1	82	88.720	ENSFALG00000004027	RBFOX1	98	88.720	Ficedula_albicollis
ENSLOCG00000006675	rbfox1	99	86.514	ENSFDAG00000007388	RBFOX1	98	86.514	Fukomys_damarensis
ENSLOCG00000006675	rbfox1	99	86.432	ENSGALG00000034325	RBFOX1	94	86.432	Gallus_gallus
ENSLOCG00000006675	rbfox1	99	87.089	ENSGAGG00000023681	RBFOX1	100	90.000	Gopherus_agassizii
ENSLOCG00000006675	rbfox1	99	86.041	ENSGGOG00000016871	-	97	86.041	Gorilla_gorilla
ENSLOCG00000006675	rbfox1	99	86.260	ENSHGLG00000016944	RBFOX1	98	86.260	Heterocephalus_glaber_female
ENSLOCG00000006675	rbfox1	99	86.260	ENSHGLG00100003272	RBFOX1	98	86.260	Heterocephalus_glaber_male
ENSLOCG00000006675	rbfox1	85	70.571	ENSHCOG00000016419	rbfox1	91	70.571	Hippocampus_comes
ENSLOCG00000006675	rbfox1	95	84.737	ENSIPUG00000015215	rbfox1	100	84.737	Ictalurus_punctatus
ENSLOCG00000006675	rbfox1	99	86.260	ENSSTOG00000000322	RBFOX1	98	86.260	Ictidomys_tridecemlineatus
ENSLOCG00000006675	rbfox1	99	84.733	ENSJJAG00000002575	Rbfox1	98	84.733	Jaculus_jaculus
ENSLOCG00000006675	rbfox1	99	74.065	ENSLBEG00000014659	rbfox1	98	73.815	Labrus_bergylta
ENSLOCG00000006675	rbfox1	78	86.495	ENSLAFG00000011480	RBFOX1	100	86.495	Loxodonta_africana
ENSLOCG00000006675	rbfox1	99	85.787	ENSMFAG00000036447	RBFOX1	97	85.787	Macaca_fascicularis
ENSLOCG00000006675	rbfox1	99	85.787	ENSMMUG00000003458	RBFOX1	97	87.339	Macaca_mulatta
ENSLOCG00000006675	rbfox1	99	84.810	ENSMNEG00000032034	RBFOX1	94	84.810	Macaca_nemestrina
ENSLOCG00000006675	rbfox1	99	86.041	ENSMLEG00000015382	RBFOX1	97	86.041	Mandrillus_leucophaeus
ENSLOCG00000006675	rbfox1	95	74.937	ENSMAMG00000003142	rbfox1	100	75.443	Mastacembelus_armatus
ENSLOCG00000006675	rbfox1	71	87.324	ENSMGAG00000008606	RBFOX1	95	87.097	Meleagris_gallopavo
ENSLOCG00000006675	rbfox1	97	50.130	ENSMAUG00000020570	Rbfox1	96	49.612	Mesocricetus_auratus
ENSLOCG00000006675	rbfox1	99	85.533	ENSMICG00000034286	RBFOX1	98	85.139	Microcebus_murinus
ENSLOCG00000006675	rbfox1	99	86.005	ENSMOCG00000020932	Rbfox1	100	86.305	Microtus_ochrogaster
ENSLOCG00000006675	rbfox1	85	72.515	ENSMMOG00000009716	rbfox1	86	71.930	Mola_mola
ENSLOCG00000006675	rbfox1	81	86.957	ENSMODG00000005826	RBFOX1	90	86.957	Monodelphis_domestica
ENSLOCG00000006675	rbfox1	100	74.634	ENSMALG00000003337	rbfox1	98	75.309	Monopterus_albus
ENSLOCG00000006675	rbfox1	99	86.260	MGP_CAROLIEiJ_G0020427	Rbfox1	98	86.260	Mus_caroli
ENSLOCG00000006675	rbfox1	99	86.005	ENSMUSG00000008658	Rbfox1	99	87.879	Mus_musculus
ENSLOCG00000006675	rbfox1	99	86.260	MGP_PahariEiJ_G0016135	Rbfox1	98	86.260	Mus_pahari
ENSLOCG00000006675	rbfox1	99	85.751	MGP_SPRETEiJ_G0021321	Rbfox1	98	85.751	Mus_spretus
ENSLOCG00000006675	rbfox1	84	84.226	ENSMPUG00000014822	RBFOX1	85	83.776	Mustela_putorius_furo
ENSLOCG00000006675	rbfox1	78	86.774	ENSMLUG00000015896	RBFOX1	100	86.774	Myotis_lucifugus
ENSLOCG00000006675	rbfox1	98	86.957	ENSNGAG00000023276	Rbfox1	100	86.957	Nannospalax_galili
ENSLOCG00000006675	rbfox1	99	60.952	ENSNBRG00000011084	rbfox1	95	60.952	Neolamprologus_brichardi
ENSLOCG00000006675	rbfox1	99	86.294	ENSNLEG00000010017	-	97	86.294	Nomascus_leucogenys
ENSLOCG00000006675	rbfox1	74	92.308	ENSMEUG00000012525	RBFOX1	70	92.308	Notamacropus_eugenii
ENSLOCG00000006675	rbfox1	82	89.333	ENSOPRG00000006199	-	78	89.333	Ochotona_princeps
ENSLOCG00000006675	rbfox1	99	85.751	ENSODEG00000013166	RBFOX1	98	85.751	Octodon_degus
ENSLOCG00000006675	rbfox1	84	86.527	ENSOANG00000002379	RBFOX1	88	86.527	Ornithorhynchus_anatinus
ENSLOCG00000006675	rbfox1	55	89.908	ENSOCUG00000001205	-	97	89.908	Oryctolagus_cuniculus
ENSLOCG00000006675	rbfox1	99	87.023	ENSOGAG00000025535	RBFOX1	98	87.023	Otolemur_garnettii
ENSLOCG00000006675	rbfox1	57	76.754	ENSOARG00000005135	RBFOX1	90	76.754	Ovis_aries
ENSLOCG00000006675	rbfox1	98	87.468	ENSPPAG00000036238	-	100	87.468	Pan_paniscus
ENSLOCG00000006675	rbfox1	99	85.787	ENSPPRG00000006546	RBFOX1	97	85.787	Panthera_pardus
ENSLOCG00000006675	rbfox1	98	76.215	ENSPTIG00000021154	RBFOX1	99	75.510	Panthera_tigris_altaica
ENSLOCG00000006675	rbfox1	99	86.041	ENSPTRG00000007744	RBFOX1	97	86.041	Pan_troglodytes
ENSLOCG00000006675	rbfox1	99	86.041	ENSPANG00000026500	RBFOX1	97	86.041	Papio_anubis
ENSLOCG00000006675	rbfox1	99	85.823	ENSPKIG00000009667	-	95	85.445	Paramormyrops_kingsleyae
ENSLOCG00000006675	rbfox1	74	87.075	ENSPKIG00000019353	rbfox1	88	85.619	Paramormyrops_kingsleyae
ENSLOCG00000006675	rbfox1	98	90.051	ENSPSIG00000006523	RBFOX1	97	90.051	Pelodiscus_sinensis
ENSLOCG00000006675	rbfox1	99	86.260	ENSPEMG00000017607	Rbfox1	98	86.260	Peromyscus_maniculatus_bairdii
ENSLOCG00000006675	rbfox1	74	82.935	ENSPCIG00000026887	RBFOX1	100	82.935	Phascolarctos_cinereus
ENSLOCG00000006675	rbfox1	84	84.524	ENSPPYG00000007079	-	85	84.524	Pongo_abelii
ENSLOCG00000006675	rbfox1	89	75.493	ENSPCAG00000002630	RBFOX1	94	75.140	Procavia_capensis
ENSLOCG00000006675	rbfox1	99	85.533	ENSPCOG00000025687	RBFOX1	98	85.139	Propithecus_coquereli
ENSLOCG00000006675	rbfox1	99	80.506	ENSPVAG00000013467	RBFOX1	94	80.151	Pteropus_vampyrus
ENSLOCG00000006675	rbfox1	95	82.206	ENSPNAG00000023109	rbfox1	100	82.206	Pygocentrus_nattereri
ENSLOCG00000006675	rbfox1	99	85.787	ENSRNOG00000002827	Rbfox1	94	85.787	Rattus_norvegicus
ENSLOCG00000006675	rbfox1	98	87.468	ENSRBIG00000044478	RBFOX1	100	87.468	Rhinopithecus_bieti
ENSLOCG00000006675	rbfox1	99	86.041	ENSRROG00000044411	RBFOX1	97	86.041	Rhinopithecus_roxellana
ENSLOCG00000006675	rbfox1	98	86.990	ENSSBOG00000033726	RBFOX1	97	86.990	Saimiri_boliviensis_boliviensis
ENSLOCG00000006675	rbfox1	99	88.550	ENSSHAG00000009257	RBFOX1	98	88.550	Sarcophilus_harrisii
ENSLOCG00000006675	rbfox1	90	72.727	ENSSFOG00015009955	-	84	72.727	Scleropages_formosus
ENSLOCG00000006675	rbfox1	82	91.954	ENSSFOG00015023675	rbfox1	97	91.954	Scleropages_formosus
ENSLOCG00000006675	rbfox1	100	76.386	ENSSMAG00000015505	rbfox1	94	76.145	Scophthalmus_maximus
ENSLOCG00000006675	rbfox1	99	74.937	ENSSDUG00000016413	rbfox1	99	74.687	Seriola_dumerili
ENSLOCG00000006675	rbfox1	85	72.595	ENSSLDG00000009353	rbfox1	95	71.988	Seriola_lalandi_dorsalis
ENSLOCG00000006675	rbfox1	85	82.799	ENSSPUG00000009732	RBFOX1	87	82.799	Sphenodon_punctatus
ENSLOCG00000006675	rbfox1	98	77.017	ENSSPAG00000009723	rbfox1	100	76.773	Stegastes_partitus
ENSLOCG00000006675	rbfox1	96	85.564	ENSSSCG00000007917	RBFOX1	92	85.156	Sus_scrofa
ENSLOCG00000006675	rbfox1	98	90.051	ENSTGUG00000004562	RBFOX1	100	90.051	Taeniopygia_guttata
ENSLOCG00000006675	rbfox1	98	76.225	ENSTRUG00000020940	rbfox1	99	75.980	Takifugu_rubripes
ENSLOCG00000006675	rbfox1	68	57.729	ENSTNIG00000002567	rbfox1	100	59.306	Tetraodon_nigroviridis
ENSLOCG00000006675	rbfox1	61	92.199	ENSTBEG00000009169	-	58	92.199	Tupaia_belangeri
ENSLOCG00000006675	rbfox1	99	83.797	ENSTTRG00000005700	RBFOX1	94	83.417	Tursiops_truncatus
ENSLOCG00000006675	rbfox1	97	82.078	ENSUAMG00000024633	RBFOX1	97	82.857	Ursus_americanus
ENSLOCG00000006675	rbfox1	97	74.545	ENSUMAG00000003579	RBFOX1	97	73.766	Ursus_maritimus
ENSLOCG00000006675	rbfox1	78	83.923	ENSVPAG00000001284	RBFOX1	74	83.923	Vicugna_pacos
ENSLOCG00000006675	rbfox1	100	86.432	ENSVVUG00000017311	RBFOX1	91	86.432	Vulpes_vulpes