EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000007225 (Gene tree)
Gene ID: 102685893
Gene Symbol: chd9
Alias: fb08b06|fb34c12|wu:fb08b06|wu:fb34c12
Full Name: chromodomain helicase DNA binding protein 9
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 58746 bases
Position: chrLG23:14547154-14605899
Accession: 102685893
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000008767	ResIII	PF04851.15	1.6e-06	1	1
ENSLOCP00000008754	ResIII	PF04851.15	1.8e-06	1	1
ENSLOCP00000008767	BRK	PF07533.16	2e-32	1	2
ENSLOCP00000008767	BRK	PF07533.16	2e-32	2	2
ENSLOCP00000008754	BRK	PF07533.16	2.9e-32	1	2
ENSLOCP00000008754	BRK	PF07533.16	2.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000008764	-	13508	-	ENSLOCP00000008754	2979 (aa)	-	W5MK45
ENSLOCT00000008777	-	11967	XM_006641478	ENSLOCP00000008767	2443 (aa)	-	W5MK58

Gene Model

Click here to download ENSLOCG00000007225's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000007225's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000007225	chd9	75	64.599	ENSLOCG00000007386	chd6	72	62.197
ENSLOCG00000007225	chd9	85	72.147	ENSLOCG00000005062	chd7	74	66.771

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000007225	chd9	99	74.013	ENSG00000177200	CHD9	98	75.357	Homo_sapiens
ENSLOCG00000007225	chd9	99	76.134	ENSAPOG00000023034	chd9	100	76.792	Acanthochromis_polyacanthus
ENSLOCG00000007225	chd9	99	73.826	ENSAMEG00000016232	CHD9	87	72.978	Ailuropoda_melanoleuca
ENSLOCG00000007225	chd9	95	74.375	ENSACIG00000004097	chd9	90	70.442	Amphilophus_citrinellus
ENSLOCG00000007225	chd9	99	76.372	ENSAOCG00000005487	chd9	99	77.192	Amphiprion_ocellaris
ENSLOCG00000007225	chd9	99	76.134	ENSAPEG00000009859	chd9	99	76.699	Amphiprion_percula
ENSLOCG00000007225	chd9	98	76.688	ENSATEG00000002748	chd9	99	66.951	Anabas_testudineus
ENSLOCG00000007225	chd9	68	80.801	ENSAPLG00000002826	CHD9	87	73.941	Anas_platyrhynchos
ENSLOCG00000007225	chd9	68	80.203	ENSACAG00000016150	CHD9	86	71.880	Anolis_carolinensis
ENSLOCG00000007225	chd9	99	73.284	ENSANAG00000015630	CHD9	98	75.357	Aotus_nancymaae
ENSLOCG00000007225	chd9	96	76.284	ENSACLG00000016899	chd9	98	67.952	Astatotilapia_calliptera
ENSLOCG00000007225	chd9	99	75.232	ENSAMXG00000005652	chd9	99	75.050	Astyanax_mexicanus
ENSLOCG00000007225	chd9	99	73.529	ENSBTAG00000002287	CHD9	87	72.775	Bos_taurus
ENSLOCG00000007225	chd9	68	79.892	ENSCJAG00000001573	CHD9	98	75.714	Callithrix_jacchus
ENSLOCG00000007225	chd9	68	80.371	ENSCAFG00000009699	CHD9	87	73.060	Canis_familiaris
ENSLOCG00000007225	chd9	68	80.371	ENSCAFG00020002879	CHD9	98	75.714	Canis_lupus_dingo
ENSLOCG00000007225	chd9	95	78.919	ENSCHIG00000021000	CHD9	87	71.948	Capra_hircus
ENSLOCG00000007225	chd9	68	80.012	ENSTSYG00000007693	CHD9	98	76.071	Carlito_syrichta
ENSLOCG00000007225	chd9	88	66.897	ENSCAPG00000011604	CHD9	80	60.320	Cavia_aperea
ENSLOCG00000007225	chd9	99	69.303	ENSCPOG00000036544	CHD9	87	68.996	Cavia_porcellus
ENSLOCG00000007225	chd9	99	73.522	ENSCCAG00000036178	CHD9	98	75.986	Cebus_capucinus
ENSLOCG00000007225	chd9	99	73.840	ENSCATG00000036753	CHD9	98	75.714	Cercocebus_atys
ENSLOCG00000007225	chd9	99	73.227	ENSCLAG00000007137	CHD9	100	81.594	Chinchilla_lanigera
ENSLOCG00000007225	chd9	68	79.832	ENSCSAG00000005311	CHD9	87	72.738	Chlorocebus_sabaeus
ENSLOCG00000007225	chd9	66	86.538	ENSCHOG00000003935	CHD9	59	93.229	Choloepus_hoffmanni
ENSLOCG00000007225	chd9	89	83.896	ENSCPBG00000012459	CHD9	88	82.814	Chrysemys_picta_bellii
ENSLOCG00000007225	chd9	99	73.347	ENSCANG00000030349	CHD9	98	75.714	Colobus_angolensis_palliatus
ENSLOCG00000007225	chd9	68	78.969	ENSCGRG00001016150	Chd9	87	72.739	Cricetulus_griseus_chok1gshd
ENSLOCG00000007225	chd9	68	78.969	ENSCGRG00000012850	Chd9	100	80.808	Cricetulus_griseus_crigri
ENSLOCG00000007225	chd9	97	73.203	ENSCSEG00000009209	chd9	99	72.941	Cynoglossus_semilaevis
ENSLOCG00000007225	chd9	96	77.046	ENSCVAG00000016195	chd9	99	66.156	Cyprinodon_variegatus
ENSLOCG00000007225	chd9	68	80.613	ENSDARG00000074498	chd9	99	74.960	Danio_rerio
ENSLOCG00000007225	chd9	95	73.851	ENSDNOG00000006045	CHD9	99	73.895	Dasypus_novemcinctus
ENSLOCG00000007225	chd9	82	74.455	ENSDORG00000008523	-	99	75.074	Dipodomys_ordii
ENSLOCG00000007225	chd9	61	83.158	ENSETEG00000009565	CHD9	81	83.158	Echinops_telfairi
ENSLOCG00000007225	chd9	95	77.333	ENSEASG00005014832	CHD9	97	84.433	Equus_asinus_asinus
ENSLOCG00000007225	chd9	68	80.132	ENSECAG00000011505	CHD9	87	73.567	Equus_caballus
ENSLOCG00000007225	chd9	77	90.135	ENSEEUG00000014515	CHD9	71	89.732	Erinaceus_europaeus
ENSLOCG00000007225	chd9	97	77.574	ENSELUG00000006031	chd9	99	76.457	Esox_lucius
ENSLOCG00000007225	chd9	68	80.371	ENSFCAG00000022534	CHD9	98	75.357	Felis_catus
ENSLOCG00000007225	chd9	99	74.298	ENSFALG00000013276	CHD9	99	74.148	Ficedula_albicollis
ENSLOCG00000007225	chd9	99	73.173	ENSFDAG00000021037	CHD9	87	72.524	Fukomys_damarensis
ENSLOCG00000007225	chd9	98	76.187	ENSFHEG00000006068	chd9	98	76.027	Fundulus_heteroclitus
ENSLOCG00000007225	chd9	79	81.997	ENSGMOG00000006040	chd9	83	82.065	Gadus_morhua
ENSLOCG00000007225	chd9	94	75.911	ENSGALG00000039178	CHD9	87	74.363	Gallus_gallus
ENSLOCG00000007225	chd9	98	76.555	ENSGAFG00000010014	chd9	98	76.208	Gambusia_affinis
ENSLOCG00000007225	chd9	97	73.904	ENSGACG00000016694	chd9	99	74.269	Gasterosteus_aculeatus
ENSLOCG00000007225	chd9	99	73.611	ENSGGOG00000014816	CHD9	98	75.714	Gorilla_gorilla
ENSLOCG00000007225	chd9	97	75.985	ENSHBUG00000023322	chd9	98	74.790	Haplochromis_burtoni
ENSLOCG00000007225	chd9	68	79.593	ENSHGLG00000014938	CHD9	100	81.818	Heterocephalus_glaber_female
ENSLOCG00000007225	chd9	97	74.012	ENSHCOG00000000937	chd9	97	74.389	Hippocampus_comes
ENSLOCG00000007225	chd9	99	74.990	ENSIPUG00000016448	chd9	97	79.078	Ictalurus_punctatus
ENSLOCG00000007225	chd9	99	73.870	ENSSTOG00000022273	CHD9	100	81.818	Ictidomys_tridecemlineatus
ENSLOCG00000007225	chd9	82	74.975	ENSJJAG00000015741	-	99	75.384	Jaculus_jaculus
ENSLOCG00000007225	chd9	97	76.746	ENSKMAG00000016784	chd9	97	75.918	Kryptolebias_marmoratus
ENSLOCG00000007225	chd9	97	76.372	ENSLBEG00000012077	chd9	99	74.881	Labrus_bergylta
ENSLOCG00000007225	chd9	99	70.277	ENSLACG00000005557	CHD9	87	68.917	Latimeria_chalumnae
ENSLOCG00000007225	chd9	68	80.192	ENSLAFG00000015374	CHD9	87	72.543	Loxodonta_africana
ENSLOCG00000007225	chd9	99	73.347	ENSMFAG00000041354	CHD9	98	75.714	Macaca_fascicularis
ENSLOCG00000007225	chd9	99	73.347	ENSMMUG00000016310	CHD9	98	75.714	Macaca_mulatta
ENSLOCG00000007225	chd9	99	73.306	ENSMNEG00000031494	CHD9	87	75.230	Macaca_nemestrina
ENSLOCG00000007225	chd9	99	73.347	ENSMLEG00000043219	CHD9	98	75.714	Mandrillus_leucophaeus
ENSLOCG00000007225	chd9	98	75.910	ENSMAMG00000003909	chd9	90	72.379	Mastacembelus_armatus
ENSLOCG00000007225	chd9	97	76.728	ENSMZEG00005006581	chd9	98	75.519	Maylandia_zebra
ENSLOCG00000007225	chd9	99	69.915	ENSMGAG00000004642	CHD9	87	69.960	Meleagris_gallopavo
ENSLOCG00000007225	chd9	68	80.012	ENSMICG00000016679	CHD9	98	76.786	Microcebus_murinus
ENSLOCG00000007225	chd9	97	73.613	ENSMMOG00000016406	chd9	89	73.525	Mola_mola
ENSLOCG00000007225	chd9	87	78.476	ENSMODG00000013142	-	99	83.309	Monodelphis_domestica
ENSLOCG00000007225	chd9	95	76.248	ENSMALG00000013306	chd9	87	74.242	Monopterus_albus
ENSLOCG00000007225	chd9	68	78.443	MGP_CAROLIEiJ_G0031364	Chd9	87	71.446	Mus_caroli
ENSLOCG00000007225	chd9	99	72.332	ENSMUSG00000056608	Chd9	100	80.135	Mus_musculus
ENSLOCG00000007225	chd9	84	78.755	MGP_PahariEiJ_G0022964	Chd9	87	70.357	Mus_pahari
ENSLOCG00000007225	chd9	68	78.204	MGP_SPRETEiJ_G0032483	Chd9	87	71.179	Mus_spretus
ENSLOCG00000007225	chd9	68	80.491	ENSMPUG00000003285	CHD9	87	72.816	Mustela_putorius_furo
ENSLOCG00000007225	chd9	68	80.072	ENSMLUG00000004456	CHD9	87	72.613	Myotis_lucifugus
ENSLOCG00000007225	chd9	97	77.316	ENSNBRG00000009423	chd9	99	75.859	Neolamprologus_brichardi
ENSLOCG00000007225	chd9	87	76.054	ENSNLEG00000001026	CHD9	87	75.485	Nomascus_leucogenys
ENSLOCG00000007225	chd9	74	99.248	ENSMEUG00000008222	-	76	96.753	Notamacropus_eugenii
ENSLOCG00000007225	chd9	63	99.248	ENSOPRG00000011168	CHD9	73	91.453	Ochotona_princeps
ENSLOCG00000007225	chd9	68	79.892	ENSODEG00000004466	CHD9	87	72.495	Octodon_degus
ENSLOCG00000007225	chd9	97	75.934	ENSONIG00000002816	chd9	98	76.345	Oreochromis_niloticus
ENSLOCG00000007225	chd9	68	81.437	ENSOANG00000013401	CHD9	87	73.954	Ornithorhynchus_anatinus
ENSLOCG00000007225	chd9	99	73.699	ENSOCUG00000001016	CHD9	98	74.199	Oryctolagus_cuniculus
ENSLOCG00000007225	chd9	96	75.791	ENSORLG00000013810	chd9	96	74.897	Oryzias_latipes
ENSLOCG00000007225	chd9	91	76.838	ENSORLG00020020665	chd9	88	72.468	Oryzias_latipes_hni
ENSLOCG00000007225	chd9	98	74.634	ENSORLG00015019126	chd9	98	74.890	Oryzias_latipes_hsok
ENSLOCG00000007225	chd9	54	83.198	ENSOMEG00000015978	chd9	81	83.174	Oryzias_melastigma
ENSLOCG00000007225	chd9	68	80.120	ENSOGAG00000002110	CHD9	87	72.590	Otolemur_garnettii
ENSLOCG00000007225	chd9	99	73.684	ENSOARG00000017664	CHD9	87	72.834	Ovis_aries
ENSLOCG00000007225	chd9	97	73.651	ENSPPAG00000039388	-	98	74.285	Pan_paniscus
ENSLOCG00000007225	chd9	68	80.311	ENSPPRG00000004801	CHD9	98	75.000	Panthera_pardus
ENSLOCG00000007225	chd9	68	78.695	ENSPTIG00000021854	CHD9	98	65.714	Panthera_tigris_altaica
ENSLOCG00000007225	chd9	99	73.559	ENSPTRG00000008113	CHD9	98	75.714	Pan_troglodytes
ENSLOCG00000007225	chd9	99	73.363	ENSPANG00000019307	CHD9	98	75.714	Papio_anubis
ENSLOCG00000007225	chd9	98	73.030	ENSPKIG00000025401	-	87	72.687	Paramormyrops_kingsleyae
ENSLOCG00000007225	chd9	99	78.519	ENSPKIG00000021876	chd9	98	79.689	Paramormyrops_kingsleyae
ENSLOCG00000007225	chd9	57	81.214	ENSPSIG00000008099	CHD9	80	80.839	Pelodiscus_sinensis
ENSLOCG00000007225	chd9	82	79.426	ENSPCIG00000017215	CHD9	99	75.458	Phascolarctos_cinereus
ENSLOCG00000007225	chd9	68	80.874	ENSPFOG00000015839	chd9	98	66.689	Poecilia_formosa
ENSLOCG00000007225	chd9	98	76.041	ENSPLAG00000011118	chd9	98	75.622	Poecilia_latipinna
ENSLOCG00000007225	chd9	68	80.355	ENSPMEG00000015106	chd9	98	65.496	Poecilia_mexicana
ENSLOCG00000007225	chd9	98	76.309	ENSPREG00000006473	chd9	99	75.730	Poecilia_reticulata
ENSLOCG00000007225	chd9	99	73.559	ENSPPYG00000007348	CHD9	87	72.868	Pongo_abelii
ENSLOCG00000007225	chd9	69	83.258	ENSPCAG00000007564	CHD9	75	83.031	Procavia_capensis
ENSLOCG00000007225	chd9	68	77.499	ENSPCOG00000028433	CHD9	98	75.714	Propithecus_coquereli
ENSLOCG00000007225	chd9	96	76.059	ENSPVAG00000015617	CHD9	85	75.926	Pteropus_vampyrus
ENSLOCG00000007225	chd9	97	76.564	ENSPNYG00000010947	chd9	98	75.599	Pundamilia_nyererei
ENSLOCG00000007225	chd9	99	75.432	ENSPNAG00000024141	chd9	99	75.800	Pygocentrus_nattereri
ENSLOCG00000007225	chd9	68	75.627	ENSRNOG00000049302	Chd9	78	81.851	Rattus_norvegicus
ENSLOCG00000007225	chd9	99	73.091	ENSRBIG00000035553	CHD9	98	75.714	Rhinopithecus_bieti
ENSLOCG00000007225	chd9	97	73.819	ENSRROG00000033278	CHD9	98	75.714	Rhinopithecus_roxellana
ENSLOCG00000007225	chd9	68	79.773	ENSSBOG00000030240	CHD9	98	75.000	Saimiri_boliviensis_boliviensis
ENSLOCG00000007225	chd9	99	74.163	ENSSHAG00000002719	CHD9	87	73.325	Sarcophilus_harrisii
ENSLOCG00000007225	chd9	99	74.686	ENSSFOG00015001327	chd9	99	74.635	Scleropages_formosus
ENSLOCG00000007225	chd9	99	79.573	ENSSFOG00015020209	chd9	99	79.746	Scleropages_formosus
ENSLOCG00000007225	chd9	97	75.143	ENSSMAG00000008953	chd9	98	75.621	Scophthalmus_maximus
ENSLOCG00000007225	chd9	99	75.902	ENSSDUG00000006139	chd9	99	76.423	Seriola_dumerili
ENSLOCG00000007225	chd9	99	75.608	ENSSLDG00000017818	chd9	99	76.037	Seriola_lalandi_dorsalis
ENSLOCG00000007225	chd9	65	84.197	ENSSARG00000010632	CHD9	84	72.484	Sorex_araneus
ENSLOCG00000007225	chd9	99	76.052	ENSSPAG00000021649	chd9	99	76.536	Stegastes_partitus
ENSLOCG00000007225	chd9	95	79.486	ENSSSCG00000033591	CHD9	87	72.328	Sus_scrofa
ENSLOCG00000007225	chd9	87	76.411	ENSTGUG00000007476	CHD9	87	75.517	Taeniopygia_guttata
ENSLOCG00000007225	chd9	68	80.094	ENSTRUG00000009125	chd9	88	73.810	Takifugu_rubripes
ENSLOCG00000007225	chd9	67	85.366	ENSTNIG00000003825	chd9	89	83.810	Tetraodon_nigroviridis
ENSLOCG00000007225	chd9	64	72.222	ENSTBEG00000016052	-	67	72.222	Tupaia_belangeri
ENSLOCG00000007225	chd9	79	90.095	ENSUMAG00000004043	CHD9	96	90.275	Ursus_maritimus
ENSLOCG00000007225	chd9	65	81.308	ENSVPAG00000001374	CHD9	85	72.159	Vicugna_pacos
ENSLOCG00000007225	chd9	68	80.311	ENSVVUG00000019435	CHD9	87	73.019	Vulpes_vulpes
ENSLOCG00000007225	chd9	99	70.526	ENSXETG00000000349	chd9	87	71.499	Xenopus_tropicalis
ENSLOCG00000007225	chd9	97	75.956	ENSXCOG00000012997	chd9	99	75.130	Xiphophorus_couchianus
ENSLOCG00000007225	chd9	98	75.863	ENSXMAG00000016192	chd9	99	75.764	Xiphophorus_maculatus