EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000007332 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 778 bases
Position: chrLG9:15153183-15153960
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000008878	RVT_1	PF00078.27	1e-35	1	1
ENSLOCP00000008898	RVT_1	PF00078.27	2.7e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000008909	-	726	-	ENSLOCP00000008898	242 (aa)	-	W5MKI9
ENSLOCT00000008889	-	762	-	ENSLOCP00000008878	254 (aa)	-	W5MKG9

Gene Model

Click here to download ENSLOCG00000007332's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000007332's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000007332	-	77	30.374	ENSLOCG00000014208	-	99	30.374
ENSLOCG00000007332	-	97	83.884	ENSLOCG00000016625	-	66	84.711
ENSLOCG00000007332	-	54	59.559	ENSLOCG00000012797	-	95	59.559
ENSLOCG00000007332	-	100	53.282	ENSLOCG00000008864	-	56	53.282
ENSLOCG00000007332	-	100	72.984	ENSLOCG00000004365	-	54	74.104
ENSLOCG00000007332	-	79	62.255	ENSLOCG00000010238	-	81	62.255
ENSLOCG00000007332	-	69	31.492	ENSLOCG00000009926	-	90	31.492
ENSLOCG00000007332	-	100	85.714	ENSLOCG00000017287	-	69	85.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000007332	-	59	37.241	ENSEBUG00000004499	-	55	37.241	Eptatretus_burgeri
ENSLOCG00000007332	-	87	39.908	ENSEBUG00000002536	-	55	40.826	Eptatretus_burgeri
ENSLOCG00000007332	-	66	38.788	ENSEBUG00000014508	-	91	40.000	Eptatretus_burgeri
ENSLOCG00000007332	-	99	41.502	ENSLACG00000002615	-	99	41.502	Latimeria_chalumnae
ENSLOCG00000007332	-	65	40.244	ENSLACG00000001026	-	53	40.606	Latimeria_chalumnae
ENSLOCG00000007332	-	70	60.112	ENSNBRG00000019184	-	89	61.236	Neolamprologus_brichardi
ENSLOCG00000007332	-	64	37.654	ENSPFOG00000006063	-	53	38.272	Poecilia_formosa