EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000007519 (Gene tree)
Gene ID: 102696874
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: embryonic polyadenylate-binding protein-like
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 8270 bases
Position: chrLG18:15279977-15288246
Accession: 102696874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000009127	PABP	PF00658.18	1.3e-29	1	1
ENSLOCP00000009127	RRM_1	PF00076.22	6.6e-90	1	4
ENSLOCP00000009127	RRM_1	PF00076.22	6.6e-90	2	4
ENSLOCP00000009127	RRM_1	PF00076.22	6.6e-90	3	4
ENSLOCP00000009127	RRM_1	PF00076.22	6.6e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000009138	-	1905	XM_006639670	ENSLOCP00000009127	635 (aa)	-	W5ML68

Gene Model

Click here to download ENSLOCG00000007519's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000007519's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000007519	pabpc1l	62	36.145	ENSLOCG00000007647	elavl3	90	36.145
ENSLOCG00000007519	pabpc1l	50	36.047	ENSLOCG00000015690	celf2	54	36.047
ENSLOCG00000007519	pabpc1l	58	38.028	ENSLOCG00000008341	rbm19	59	38.028
ENSLOCG00000007519	pabpc1l	99	74.451	ENSLOCG00000009681	PABPC1	98	74.451
ENSLOCG00000007519	pabpc1l	61	36.145	ENSLOCG00000012575	ELAVL2	87	36.145
ENSLOCG00000007519	pabpc1l	99	71.586	ENSLOCG00000001877	pabpc4	98	71.586
ENSLOCG00000007519	pabpc1l	61	36.957	ENSLOCG00000000284	elavl1b	90	36.957
ENSLOCG00000007519	pabpc1l	57	30.588	ENSLOCG00000011405	tial1	64	30.588
ENSLOCG00000007519	pabpc1l	58	31.183	ENSLOCG00000015324	tia1l	72	31.183

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000007519	pabpc1l	98	70.353	ENSG00000101104	PABPC1L	98	78.395	Homo_sapiens
ENSLOCG00000007519	pabpc1l	98	75.241	ENSAPOG00000010842	pabpc1l	99	75.241	Acanthochromis_polyacanthus
ENSLOCG00000007519	pabpc1l	98	66.410	ENSAMEG00000004099	PABPC1L	100	66.822	Ailuropoda_melanoleuca
ENSLOCG00000007519	pabpc1l	98	82.151	ENSACIG00000021004	-	99	82.151	Amphilophus_citrinellus
ENSLOCG00000007519	pabpc1l	99	76.704	ENSAOCG00000006167	-	99	76.704	Amphiprion_ocellaris
ENSLOCG00000007519	pabpc1l	99	77.033	ENSAPEG00000010558	-	98	89.671	Amphiprion_percula
ENSLOCG00000007519	pabpc1l	99	80.190	ENSATEG00000007428	pabpc1l	99	80.666	Anabas_testudineus
ENSLOCG00000007519	pabpc1l	97	76.006	ENSAPLG00000008415	PABPC1L	99	75.917	Anas_platyrhynchos
ENSLOCG00000007519	pabpc1l	99	79.239	ENSACAG00000011841	PABPC1L	99	79.239	Anolis_carolinensis
ENSLOCG00000007519	pabpc1l	98	69.823	ENSANAG00000026826	PABPC1L	99	69.823	Aotus_nancymaae
ENSLOCG00000007519	pabpc1l	99	80.190	ENSACLG00000024791	pabpc1l	99	80.190	Astatotilapia_calliptera
ENSLOCG00000007519	pabpc1l	99	84.810	ENSAMXG00000013552	pabpc1l	99	84.810	Astyanax_mexicanus
ENSLOCG00000007519	pabpc1l	61	88.690	ENSBTAG00000055300	-	100	88.690	Bos_taurus
ENSLOCG00000007519	pabpc1l	64	66.304	ENSBTAG00000016849	PABPC1L	85	66.304	Bos_taurus
ENSLOCG00000007519	pabpc1l	58	79.885	ENSCJAG00000038506	-	100	79.885	Callithrix_jacchus
ENSLOCG00000007519	pabpc1l	98	70.305	ENSCJAG00000017628	PABPC1L	99	70.305	Callithrix_jacchus
ENSLOCG00000007519	pabpc1l	98	66.924	ENSCAFG00000009573	PABPC1L	100	66.924	Canis_familiaris
ENSLOCG00000007519	pabpc1l	99	70.365	ENSCAFG00020013828	PABPC1L	100	70.365	Canis_lupus_dingo
ENSLOCG00000007519	pabpc1l	97	70.684	ENSCHIG00000025759	PABPC1L	91	70.684	Capra_hircus
ENSLOCG00000007519	pabpc1l	98	69.775	ENSTSYG00000006645	PABPC1L	98	69.775	Carlito_syrichta
ENSLOCG00000007519	pabpc1l	97	65.162	ENSCAPG00000014519	PABPC1L	99	65.162	Cavia_aperea
ENSLOCG00000007519	pabpc1l	98	67.732	ENSCPOG00000013633	PABPC1L	99	67.732	Cavia_porcellus
ENSLOCG00000007519	pabpc1l	98	69.440	ENSCCAG00000023338	PABPC1L	99	70.240	Cebus_capucinus
ENSLOCG00000007519	pabpc1l	98	70.833	ENSCATG00000034065	PABPC1L	99	70.880	Cercocebus_atys
ENSLOCG00000007519	pabpc1l	98	67.252	ENSCLAG00000005298	PABPC1L	99	68.211	Chinchilla_lanigera
ENSLOCG00000007519	pabpc1l	98	70.673	ENSCSAG00000014242	PABPC1L	99	70.720	Chlorocebus_sabaeus
ENSLOCG00000007519	pabpc1l	55	82.090	ENSCPBG00000007810	-	94	82.090	Chrysemys_picta_bellii
ENSLOCG00000007519	pabpc1l	69	85.520	ENSCPBG00000017755	-	99	85.520	Chrysemys_picta_bellii
ENSLOCG00000007519	pabpc1l	96	52.778	ENSCING00000002796	-	97	52.778	Ciona_intestinalis
ENSLOCG00000007519	pabpc1l	98	59.370	ENSCSAVG00000003102	-	100	83.893	Ciona_savignyi
ENSLOCG00000007519	pabpc1l	81	79.545	ENSCSAVG00000004246	-	89	74.286	Ciona_savignyi
ENSLOCG00000007519	pabpc1l	98	67.299	ENSCANG00000037530	PABPC1L	99	67.350	Colobus_angolensis_palliatus
ENSLOCG00000007519	pabpc1l	99	62.698	ENSCGRG00001021938	Pabpc1l	99	62.698	Cricetulus_griseus_chok1gshd
ENSLOCG00000007519	pabpc1l	99	62.698	ENSCGRG00000007946	Pabpc1l	99	62.698	Cricetulus_griseus_crigri
ENSLOCG00000007519	pabpc1l	98	72.320	ENSCSEG00000021295	pabpc1l	99	72.320	Cynoglossus_semilaevis
ENSLOCG00000007519	pabpc1l	99	80.922	ENSCVAG00000015943	-	86	96.947	Cyprinodon_variegatus
ENSLOCG00000007519	pabpc1l	99	83.835	ENSDARG00000002597	pabpc1l	88	96.923	Danio_rerio
ENSLOCG00000007519	pabpc1l	98	71.910	ENSDNOG00000048450	PABPC1L	99	71.910	Dasypus_novemcinctus
ENSLOCG00000007519	pabpc1l	98	68.750	ENSDORG00000001067	Pabpc1l	99	68.750	Dipodomys_ordii
ENSLOCG00000007519	pabpc1l	95	79.268	ENSETEG00000009969	PABPC1L	71	79.268	Echinops_telfairi
ENSLOCG00000007519	pabpc1l	61	86.310	ENSEASG00005023408	-	100	86.310	Equus_asinus_asinus
ENSLOCG00000007519	pabpc1l	50	78.882	ENSEASG00005023407	-	65	78.882	Equus_asinus_asinus
ENSLOCG00000007519	pabpc1l	65	70.513	ENSECAG00000040139	-	83	70.513	Equus_caballus
ENSLOCG00000007519	pabpc1l	99	67.457	ENSEEUG00000005978	PABPC1L	99	67.457	Erinaceus_europaeus
ENSLOCG00000007519	pabpc1l	99	84.335	ENSELUG00000001811	pabpc1l	99	84.335	Esox_lucius
ENSLOCG00000007519	pabpc1l	99	71.474	ENSFCAG00000011692	PABPC1L	100	71.474	Felis_catus
ENSLOCG00000007519	pabpc1l	85	78.664	ENSFALG00000005372	PABPC1L	99	73.142	Ficedula_albicollis
ENSLOCG00000007519	pabpc1l	98	67.040	ENSFDAG00000008291	PABPC1L	99	67.200	Fukomys_damarensis
ENSLOCG00000007519	pabpc1l	99	80.892	ENSFHEG00000003398	pabpc1l	99	80.892	Fundulus_heteroclitus
ENSLOCG00000007519	pabpc1l	99	80.861	ENSGMOG00000004437	pabpc1l	99	80.861	Gadus_morhua
ENSLOCG00000007519	pabpc1l	83	80.272	ENSGALG00000004123	PABPC1L	98	86.199	Gallus_gallus
ENSLOCG00000007519	pabpc1l	99	75.264	ENSGAFG00000021057	pabpc1l	99	75.264	Gambusia_affinis
ENSLOCG00000007519	pabpc1l	98	79.936	ENSGACG00000002792	pabpc1l	100	79.936	Gasterosteus_aculeatus
ENSLOCG00000007519	pabpc1l	98	79.904	ENSGAGG00000000589	PABPC1L	97	83.333	Gopherus_agassizii
ENSLOCG00000007519	pabpc1l	98	70.513	ENSGGOG00000004584	PABPC1L	99	70.560	Gorilla_gorilla
ENSLOCG00000007519	pabpc1l	99	80.349	ENSHBUG00000006134	pabpc1l	99	80.349	Haplochromis_burtoni
ENSLOCG00000007519	pabpc1l	98	68.581	ENSHGLG00000008434	PABPC1L	99	68.530	Heterocephalus_glaber_female
ENSLOCG00000007519	pabpc1l	98	68.581	ENSHGLG00100012151	PABPC1L	99	68.530	Heterocephalus_glaber_male
ENSLOCG00000007519	pabpc1l	57	85.955	ENSHGLG00100019506	-	100	85.955	Heterocephalus_glaber_male
ENSLOCG00000007519	pabpc1l	98	77.851	ENSHCOG00000009270	pabpc1l	99	77.851	Hippocampus_comes
ENSLOCG00000007519	pabpc1l	57	63.793	ENSIPUG00000006760	-	88	63.793	Ictalurus_punctatus
ENSLOCG00000007519	pabpc1l	99	85.397	ENSIPUG00000012602	pabpc1l	99	85.397	Ictalurus_punctatus
ENSLOCG00000007519	pabpc1l	58	64.368	ENSIPUG00000006780	-	85	64.368	Ictalurus_punctatus
ENSLOCG00000007519	pabpc1l	98	70.560	ENSSTOG00000003739	PABPC1L	99	70.560	Ictidomys_tridecemlineatus
ENSLOCG00000007519	pabpc1l	98	54.480	ENSJJAG00000022406	Pabpc1l	99	52.885	Jaculus_jaculus
ENSLOCG00000007519	pabpc1l	99	78.537	ENSKMAG00000016847	pabpc1l	100	78.537	Kryptolebias_marmoratus
ENSLOCG00000007519	pabpc1l	99	79.715	ENSLBEG00000010084	pabpc1l	99	79.715	Labrus_bergylta
ENSLOCG00000007519	pabpc1l	98	78.673	ENSLACG00000005762	PABPC1L	98	81.530	Latimeria_chalumnae
ENSLOCG00000007519	pabpc1l	98	71.132	ENSLAFG00000003553	PABPC1L	100	71.132	Loxodonta_africana
ENSLOCG00000007519	pabpc1l	98	71.061	ENSMFAG00000040365	PABPC1L	99	71.108	Macaca_fascicularis
ENSLOCG00000007519	pabpc1l	98	69.775	ENSMNEG00000032298	PABPC1L	99	69.823	Macaca_nemestrina
ENSLOCG00000007519	pabpc1l	98	70.833	ENSMLEG00000043139	PABPC1L	99	70.880	Mandrillus_leucophaeus
ENSLOCG00000007519	pabpc1l	96	80.820	ENSMAMG00000011854	pabpc1l	97	80.820	Mastacembelus_armatus
ENSLOCG00000007519	pabpc1l	99	80.190	ENSMZEG00005023713	pabpc1l	99	80.190	Maylandia_zebra
ENSLOCG00000007519	pabpc1l	99	77.937	ENSMGAG00000003674	PABPC1L	99	77.937	Meleagris_gallopavo
ENSLOCG00000007519	pabpc1l	99	61.746	ENSMOCG00000013186	Pabpc1l	99	61.746	Microtus_ochrogaster
ENSLOCG00000007519	pabpc1l	99	79.524	ENSMMOG00000020574	-	90	96.154	Mola_mola
ENSLOCG00000007519	pabpc1l	96	73.539	ENSMODG00000016198	PABPC1L	99	73.539	Monodelphis_domestica
ENSLOCG00000007519	pabpc1l	96	79.672	ENSMALG00000021622	pabpc1l	100	79.672	Monopterus_albus
ENSLOCG00000007519	pabpc1l	99	61.905	MGP_CAROLIEiJ_G0024627	Pabpc1l	100	61.905	Mus_caroli
ENSLOCG00000007519	pabpc1l	99	61.746	ENSMUSG00000054582	Pabpc1l	100	61.746	Mus_musculus
ENSLOCG00000007519	pabpc1l	98	63.023	MGP_PahariEiJ_G0026071	Pabpc1l	99	63.023	Mus_pahari
ENSLOCG00000007519	pabpc1l	99	61.905	MGP_SPRETEiJ_G0025549	Pabpc1l	100	61.905	Mus_spretus
ENSLOCG00000007519	pabpc1l	99	71.632	ENSMPUG00000017646	PABPC1L	100	71.632	Mustela_putorius_furo
ENSLOCG00000007519	pabpc1l	97	68.850	ENSMLUG00000006324	PABPC1L	98	68.850	Myotis_lucifugus
ENSLOCG00000007519	pabpc1l	98	64.848	ENSNGAG00000010458	Pabpc1l	99	64.848	Nannospalax_galili
ENSLOCG00000007519	pabpc1l	98	83.486	ENSNBRG00000016633	pabpc1l	99	83.486	Neolamprologus_brichardi
ENSLOCG00000007519	pabpc1l	98	64.000	ENSMEUG00000007905	-	99	64.000	Notamacropus_eugenii
ENSLOCG00000007519	pabpc1l	98	70.418	ENSOPRG00000011846	PABPC1L	99	70.418	Ochotona_princeps
ENSLOCG00000007519	pabpc1l	98	63.082	ENSODEG00000015482	PABPC1L	99	63.082	Octodon_degus
ENSLOCG00000007519	pabpc1l	56	80.000	ENSODEG00000002920	-	97	80.000	Octodon_degus
ENSLOCG00000007519	pabpc1l	99	80.824	ENSONIG00000017314	pabpc1l	99	80.824	Oreochromis_niloticus
ENSLOCG00000007519	pabpc1l	89	64.035	ENSOANG00000015793	-	100	64.035	Ornithorhynchus_anatinus
ENSLOCG00000007519	pabpc1l	98	66.564	ENSOCUG00000003005	PABPC1L	99	66.564	Oryctolagus_cuniculus
ENSLOCG00000007519	pabpc1l	97	81.481	ENSORLG00000010322	pabpc1l	99	81.481	Oryzias_latipes
ENSLOCG00000007519	pabpc1l	97	81.481	ENSORLG00020021193	pabpc1l	99	81.481	Oryzias_latipes_hni
ENSLOCG00000007519	pabpc1l	97	81.481	ENSORLG00015017018	pabpc1l	99	81.481	Oryzias_latipes_hsok
ENSLOCG00000007519	pabpc1l	99	74.697	ENSOMEG00000010789	pabpc1l	99	74.697	Oryzias_melastigma
ENSLOCG00000007519	pabpc1l	98	70.886	ENSOGAG00000032999	PABPC1L	99	70.886	Otolemur_garnettii
ENSLOCG00000007519	pabpc1l	98	71.108	ENSOARG00000004578	PABPC1L	99	71.108	Ovis_aries
ENSLOCG00000007519	pabpc1l	98	70.513	ENSPPAG00000039677	PABPC1L	99	70.560	Pan_paniscus
ENSLOCG00000007519	pabpc1l	61	69.753	ENSPPRG00000019327	-	98	69.753	Panthera_pardus
ENSLOCG00000007519	pabpc1l	97	71.613	ENSPTIG00000006524	PABPC1L	99	71.613	Panthera_tigris_altaica
ENSLOCG00000007519	pabpc1l	61	78.704	ENSPTRG00000013531	PABPC1L	98	78.704	Pan_troglodytes
ENSLOCG00000007519	pabpc1l	98	70.833	ENSPANG00000018788	PABPC1L	99	70.880	Papio_anubis
ENSLOCG00000007519	pabpc1l	99	88.019	ENSPKIG00000007322	pabpc1l	99	88.019	Paramormyrops_kingsleyae
ENSLOCG00000007519	pabpc1l	51	83.206	ENSPKIG00000016810	-	93	83.206	Paramormyrops_kingsleyae
ENSLOCG00000007519	pabpc1l	65	87.167	ENSPSIG00000013289	PABPC1L	98	87.167	Pelodiscus_sinensis
ENSLOCG00000007519	pabpc1l	55	77.949	ENSPMGG00000023121	-	91	77.949	Periophthalmus_magnuspinnatus
ENSLOCG00000007519	pabpc1l	61	96.212	ENSPMGG00000023117	pabpc1l	94	96.212	Periophthalmus_magnuspinnatus
ENSLOCG00000007519	pabpc1l	98	61.260	ENSPEMG00000020671	Pabpc1l	98	62.063	Peromyscus_maniculatus_bairdii
ENSLOCG00000007519	pabpc1l	99	80.861	ENSPFOG00000013241	pabpc1l	99	80.861	Poecilia_formosa
ENSLOCG00000007519	pabpc1l	99	79.873	ENSPLAG00000017490	-	99	79.873	Poecilia_latipinna
ENSLOCG00000007519	pabpc1l	51	98.462	ENSPLAG00000023686	-	92	98.462	Poecilia_latipinna
ENSLOCG00000007519	pabpc1l	51	98.462	ENSPMEG00000009185	-	88	98.462	Poecilia_mexicana
ENSLOCG00000007519	pabpc1l	99	80.159	ENSPMEG00000007677	pabpc1l	99	80.159	Poecilia_mexicana
ENSLOCG00000007519	pabpc1l	65	89.104	ENSPREG00000015886	pabpc1l	99	89.104	Poecilia_reticulata
ENSLOCG00000007519	pabpc1l	98	70.513	ENSPPYG00000011042	PABPC1L	99	70.560	Pongo_abelii
ENSLOCG00000007519	pabpc1l	60	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSLOCG00000007519	pabpc1l	98	70.353	ENSPCOG00000020630	PABPC1L	99	70.353	Propithecus_coquereli
ENSLOCG00000007519	pabpc1l	99	70.064	ENSPVAG00000012663	PABPC1L	99	70.064	Pteropus_vampyrus
ENSLOCG00000007519	pabpc1l	98	83.257	ENSPNYG00000004101	pabpc1l	99	83.257	Pundamilia_nyererei
ENSLOCG00000007519	pabpc1l	99	77.338	ENSPNAG00000021248	pabpc1l	99	77.338	Pygocentrus_nattereri
ENSLOCG00000007519	pabpc1l	98	62.560	ENSRNOG00000012750	Pabpc1l	99	62.360	Rattus_norvegicus
ENSLOCG00000007519	pabpc1l	98	70.833	ENSRBIG00000035381	PABPC1L	99	70.880	Rhinopithecus_bieti
ENSLOCG00000007519	pabpc1l	98	70.673	ENSRROG00000044498	PABPC1L	99	70.720	Rhinopithecus_roxellana
ENSLOCG00000007519	pabpc1l	98	69.984	ENSSBOG00000009532	-	99	69.984	Saimiri_boliviensis_boliviensis
ENSLOCG00000007519	pabpc1l	97	68.952	ENSSHAG00000011446	PABPC1L	100	68.952	Sarcophilus_harrisii
ENSLOCG00000007519	pabpc1l	99	87.879	ENSSFOG00015017304	pabpc1l	99	87.879	Scleropages_formosus
ENSLOCG00000007519	pabpc1l	99	80.223	ENSSMAG00000010516	pabpc1l	99	95.050	Scophthalmus_maximus
ENSLOCG00000007519	pabpc1l	99	79.873	ENSSDUG00000014743	pabpc1l	99	79.873	Seriola_dumerili
ENSLOCG00000007519	pabpc1l	97	83.218	ENSSLDG00000006981	pabpc1l	99	93.780	Seriola_lalandi_dorsalis
ENSLOCG00000007519	pabpc1l	99	78.233	ENSSPUG00000004233	PABPC1L	99	78.233	Sphenodon_punctatus
ENSLOCG00000007519	pabpc1l	86	81.195	ENSSPAG00000017137	pabpc1l	97	81.195	Stegastes_partitus
ENSLOCG00000007519	pabpc1l	98	71.565	ENSSSCG00000007382	PABPC1L	99	71.565	Sus_scrofa
ENSLOCG00000007519	pabpc1l	98	76.766	ENSTGUG00000005114	PABPC1L	99	76.766	Taeniopygia_guttata
ENSLOCG00000007519	pabpc1l	96	81.209	ENSTRUG00000011085	pabpc1l	97	81.209	Takifugu_rubripes
ENSLOCG00000007519	pabpc1l	100	77.465	ENSTNIG00000017903	pabpc1l	100	77.465	Tetraodon_nigroviridis
ENSLOCG00000007519	pabpc1l	92	79.795	ENSTBEG00000002851	PABPC1L	79	79.795	Tupaia_belangeri
ENSLOCG00000007519	pabpc1l	93	69.412	ENSTTRG00000007618	PABPC1L	100	69.558	Tursiops_truncatus
ENSLOCG00000007519	pabpc1l	99	69.414	ENSUAMG00000017682	PABPC1L	100	69.414	Ursus_americanus
ENSLOCG00000007519	pabpc1l	65	77.716	ENSUMAG00000025436	PABPC1L	92	77.716	Ursus_maritimus
ENSLOCG00000007519	pabpc1l	98	77.470	ENSVVUG00000018939	PABPC1L	100	77.470	Vulpes_vulpes
ENSLOCG00000007519	pabpc1l	99	74.686	ENSXETG00000022831	pabpc1l	99	74.686	Xenopus_tropicalis
ENSLOCG00000007519	pabpc1l	99	82.339	ENSXCOG00000005459	pabpc1l	99	93.617	Xiphophorus_couchianus
ENSLOCG00000007519	pabpc1l	99	79.081	ENSXMAG00000017135	pabpc1l	99	79.081	Xiphophorus_maculatus