EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000007573 (Gene tree)
Gene ID: 102684470
Gene Symbol: scrt1b
Alias: zgc:113646
Full Name: scratch family transcriptional repressor 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 3906 bases
Position: chrLG11:22968468-22972373
Accession: 102684470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000009188	zf-C2H2	PF00096.26	7.2e-26	1	4
ENSLOCP00000009188	zf-C2H2	PF00096.26	7.2e-26	2	4
ENSLOCP00000009188	zf-C2H2	PF00096.26	7.2e-26	3	4
ENSLOCP00000009188	zf-C2H2	PF00096.26	7.2e-26	4	4
ENSLOCP00000009188	zf-met	PF12874.7	2.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000009199	-	2920	XM_006635790	ENSLOCP00000009188	279 (aa)	XP_006635853	W5MLC9

Gene Model

Click here to download ENSLOCG00000007573's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000007573's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000007573	scrt1b	55	39.007	ENSLOCG00000014366	-	94	39.007
ENSLOCG00000007573	scrt1b	95	41.667	ENSLOCG00000005992	SNAI2	99	42.086
ENSLOCG00000007573	scrt1b	56	44.872	ENSLOCG00000000544	znf319b	62	44.872
ENSLOCG00000007573	scrt1b	97	55.016	ENSLOCG00000002246	scrt2	97	55.016
ENSLOCG00000007573	scrt1b	51	35.200	ENSLOCG00000014144	-	99	35.200
ENSLOCG00000007573	scrt1b	50	36.957	ENSLOCG00000017736	znf648	57	42.574
ENSLOCG00000007573	scrt1b	61	37.037	ENSLOCG00000004208	-	99	37.037
ENSLOCG00000007573	scrt1b	57	37.500	ENSLOCG00000009778	prdm5	64	37.500
ENSLOCG00000007573	scrt1b	53	40.385	ENSLOCG00000017422	-	68	40.385
ENSLOCG00000007573	scrt1b	65	46.053	ENSLOCG00000003926	znf236	51	46.053
ENSLOCG00000007573	scrt1b	52	51.678	ENSLOCG00000004443	snai1a	59	51.678
ENSLOCG00000007573	scrt1b	53	39.189	ENSLOCG00000017864	-	98	39.189
ENSLOCG00000007573	scrt1b	50	55.396	ENSLOCG00000004887	SNAI3	91	54.054
ENSLOCG00000007573	scrt1b	68	33.673	ENSLOCG00000005750	gfi1b	57	33.673
ENSLOCG00000007573	scrt1b	53	38.614	ENSLOCG00000000714	-	90	38.614
ENSLOCG00000007573	scrt1b	56	44.872	ENSLOCG00000003678	znf319b	62	44.872
ENSLOCG00000007573	scrt1b	55	36.029	ENSLOCG00000016466	-	96	36.029
ENSLOCG00000007573	scrt1b	72	31.304	ENSLOCG00000004711	gfi1ab	56	31.304

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000007573	scrt1b	99	79.720	ENSAPOG00000015197	-	99	79.720	Acanthochromis_polyacanthus
ENSLOCG00000007573	scrt1b	100	88.968	ENSAPOG00000009279	scrt1b	100	88.968	Acanthochromis_polyacanthus
ENSLOCG00000007573	scrt1b	97	71.739	ENSAPOG00000003680	scrt2	96	71.739	Acanthochromis_polyacanthus
ENSLOCG00000007573	scrt1b	97	71.014	ENSACIG00000012604	scrt2	96	71.014	Amphilophus_citrinellus
ENSLOCG00000007573	scrt1b	100	86.525	ENSACIG00000013613	scrt1b	100	86.525	Amphilophus_citrinellus
ENSLOCG00000007573	scrt1b	99	78.523	ENSACIG00000006586	-	99	78.523	Amphilophus_citrinellus
ENSLOCG00000007573	scrt1b	96	59.333	ENSACIG00000001296	-	96	59.333	Amphilophus_citrinellus
ENSLOCG00000007573	scrt1b	100	89.680	ENSAOCG00000003910	scrt1b	100	89.680	Amphiprion_ocellaris
ENSLOCG00000007573	scrt1b	97	71.739	ENSAOCG00000021557	scrt2	96	71.739	Amphiprion_ocellaris
ENSLOCG00000007573	scrt1b	99	78.523	ENSAOCG00000023304	-	99	78.523	Amphiprion_ocellaris
ENSLOCG00000007573	scrt1b	99	78.523	ENSAPEG00000005677	-	99	78.523	Amphiprion_percula
ENSLOCG00000007573	scrt1b	97	71.739	ENSAPEG00000022558	scrt2	96	71.739	Amphiprion_percula
ENSLOCG00000007573	scrt1b	100	89.324	ENSAPEG00000000869	scrt1b	100	89.324	Amphiprion_percula
ENSLOCG00000007573	scrt1b	100	90.036	ENSATEG00000002302	scrt1b	100	90.036	Anabas_testudineus
ENSLOCG00000007573	scrt1b	97	68.285	ENSATEG00000023998	scrt2	97	68.285	Anabas_testudineus
ENSLOCG00000007573	scrt1b	99	79.577	ENSATEG00000011660	-	99	79.577	Anabas_testudineus
ENSLOCG00000007573	scrt1b	96	55.732	ENSATEG00000003195	-	97	55.732	Anabas_testudineus
ENSLOCG00000007573	scrt1b	76	77.465	ENSACAG00000016109	SCRT2	95	77.465	Anolis_carolinensis
ENSLOCG00000007573	scrt1b	100	89.324	ENSACLG00000007162	scrt1b	100	89.324	Astatotilapia_calliptera
ENSLOCG00000007573	scrt1b	99	76.080	ENSACLG00000012046	-	99	76.080	Astatotilapia_calliptera
ENSLOCG00000007573	scrt1b	100	89.247	ENSAMXG00000038085	scrt1a	100	89.247	Astyanax_mexicanus
ENSLOCG00000007573	scrt1b	87	70.518	ENSAMXG00000034158	scrt2	91	70.518	Astyanax_mexicanus
ENSLOCG00000007573	scrt1b	98	83.696	ENSAMXG00000042624	SCRT1	99	83.696	Astyanax_mexicanus
ENSLOCG00000007573	scrt1b	58	61.728	WBGene00000468	ces-1	60	60.976	Caenorhabditis_elegans
ENSLOCG00000007573	scrt1b	99	89.209	ENSCPBG00000018899	SCRT1	99	89.209	Chrysemys_picta_bellii
ENSLOCG00000007573	scrt1b	86	63.600	ENSCPBG00000027613	SCRT2	100	63.600	Chrysemys_picta_bellii
ENSLOCG00000007573	scrt1b	97	68.317	ENSCSEG00000021542	scrt2	97	68.317	Cynoglossus_semilaevis
ENSLOCG00000007573	scrt1b	99	77.703	ENSCSEG00000014892	-	99	77.703	Cynoglossus_semilaevis
ENSLOCG00000007573	scrt1b	100	89.324	ENSCSEG00000008596	scrt1b	100	89.324	Cynoglossus_semilaevis
ENSLOCG00000007573	scrt1b	97	67.314	ENSCVAG00000021038	scrt2	97	67.314	Cyprinodon_variegatus
ENSLOCG00000007573	scrt1b	100	88.612	ENSCVAG00000009561	scrt1b	100	88.612	Cyprinodon_variegatus
ENSLOCG00000007573	scrt1b	99	78.188	ENSCVAG00000003190	-	99	78.188	Cyprinodon_variegatus
ENSLOCG00000007573	scrt1b	100	92.473	ENSDARG00000100821	scrt1a	100	92.473	Danio_rerio
ENSLOCG00000007573	scrt1b	100	92.473	ENSDARG00000040214	scrt1b	100	92.473	Danio_rerio
ENSLOCG00000007573	scrt1b	99	91.727	ENSELUG00000022228	scrt1a	99	91.727	Esox_lucius
ENSLOCG00000007573	scrt1b	100	93.571	ENSELUG00000005435	scrt1b	100	93.571	Esox_lucius
ENSLOCG00000007573	scrt1b	96	66.892	ENSELUG00000023883	scrt2	96	66.773	Esox_lucius
ENSLOCG00000007573	scrt1b	83	71.674	ENSFALG00000005718	SCRT2	97	71.674	Ficedula_albicollis
ENSLOCG00000007573	scrt1b	97	62.963	ENSFDAG00000008733	SCRT1	97	62.963	Fukomys_damarensis
ENSLOCG00000007573	scrt1b	97	72.464	ENSFHEG00000005732	scrt2	96	72.464	Fundulus_heteroclitus
ENSLOCG00000007573	scrt1b	99	77.852	ENSFHEG00000009794	-	99	77.852	Fundulus_heteroclitus
ENSLOCG00000007573	scrt1b	100	88.612	ENSFHEG00000014820	scrt1b	100	88.612	Fundulus_heteroclitus
ENSLOCG00000007573	scrt1b	99	86.429	ENSGMOG00000000629	scrt1b	100	86.429	Gadus_morhua
ENSLOCG00000007573	scrt1b	97	63.107	ENSGMOG00000019519	scrt2	96	63.107	Gadus_morhua
ENSLOCG00000007573	scrt1b	57	95.161	ENSGMOG00000013833	-	54	95.161	Gadus_morhua
ENSLOCG00000007573	scrt1b	97	64.469	ENSGALG00000028912	SCRT2	97	64.388	Gallus_gallus
ENSLOCG00000007573	scrt1b	100	87.900	ENSGAFG00000007636	scrt1b	100	87.900	Gambusia_affinis
ENSLOCG00000007573	scrt1b	99	77.385	ENSGAFG00000009650	-	99	77.385	Gambusia_affinis
ENSLOCG00000007573	scrt1b	97	68.013	ENSGAFG00000003093	scrt2	97	68.013	Gambusia_affinis
ENSLOCG00000007573	scrt1b	99	86.022	ENSGACG00000008982	scrt1b	99	86.022	Gasterosteus_aculeatus
ENSLOCG00000007573	scrt1b	99	77.551	ENSGACG00000004072	-	99	77.551	Gasterosteus_aculeatus
ENSLOCG00000007573	scrt1b	63	82.386	ENSGAGG00000020760	-	68	82.386	Gopherus_agassizii
ENSLOCG00000007573	scrt1b	96	64.855	ENSGAGG00000020761	SCRT2	96	64.855	Gopherus_agassizii
ENSLOCG00000007573	scrt1b	99	89.130	ENSGAGG00000011736	SCRT1	100	89.130	Gopherus_agassizii
ENSLOCG00000007573	scrt1b	99	78.523	ENSHBUG00000019101	-	99	78.523	Haplochromis_burtoni
ENSLOCG00000007573	scrt1b	100	89.324	ENSHBUG00000016621	scrt1b	100	89.324	Haplochromis_burtoni
ENSLOCG00000007573	scrt1b	97	71.377	ENSHBUG00000012492	scrt2	96	71.377	Haplochromis_burtoni
ENSLOCG00000007573	scrt1b	99	69.896	ENSHCOG00000016179	-	99	69.896	Hippocampus_comes
ENSLOCG00000007573	scrt1b	97	68.259	ENSHCOG00000008116	scrt2	97	68.259	Hippocampus_comes
ENSLOCG00000007573	scrt1b	100	87.900	ENSHCOG00000016704	scrt1b	100	87.900	Hippocampus_comes
ENSLOCG00000007573	scrt1b	99	88.849	ENSIPUG00000004551	scrt1a	99	88.849	Ictalurus_punctatus
ENSLOCG00000007573	scrt1b	98	77.737	ENSIPUG00000005547	-	99	77.737	Ictalurus_punctatus
ENSLOCG00000007573	scrt1b	51	83.688	ENSSTOG00000032944	SCRT2	82	80.392	Ictidomys_tridecemlineatus
ENSLOCG00000007573	scrt1b	100	88.612	ENSKMAG00000005484	scrt1b	100	88.612	Kryptolebias_marmoratus
ENSLOCG00000007573	scrt1b	97	67.961	ENSKMAG00000018087	scrt2	97	67.961	Kryptolebias_marmoratus
ENSLOCG00000007573	scrt1b	99	75.585	ENSKMAG00000009489	-	99	77.258	Kryptolebias_marmoratus
ENSLOCG00000007573	scrt1b	97	67.419	ENSLBEG00000015419	scrt2	97	67.419	Labrus_bergylta
ENSLOCG00000007573	scrt1b	99	76.174	ENSLBEG00000023388	-	99	76.846	Labrus_bergylta
ENSLOCG00000007573	scrt1b	100	91.756	ENSLACG00000003588	SCRT1	99	91.756	Latimeria_chalumnae
ENSLOCG00000007573	scrt1b	96	92.593	ENSMFAG00000035496	SCRT1	70	88.591	Macaca_fascicularis
ENSLOCG00000007573	scrt1b	97	67.638	ENSMAMG00000001291	scrt2	97	67.638	Mastacembelus_armatus
ENSLOCG00000007573	scrt1b	100	88.968	ENSMAMG00000011698	scrt1b	100	88.968	Mastacembelus_armatus
ENSLOCG00000007573	scrt1b	97	71.377	ENSMZEG00005026445	scrt2	96	71.377	Maylandia_zebra
ENSLOCG00000007573	scrt1b	99	78.523	ENSMZEG00005026702	-	99	78.523	Maylandia_zebra
ENSLOCG00000007573	scrt1b	100	89.324	ENSMZEG00005005627	scrt1b	100	89.324	Maylandia_zebra
ENSLOCG00000007573	scrt1b	83	70.259	ENSMGAG00000016579	SCRT2	97	70.259	Meleagris_gallopavo
ENSLOCG00000007573	scrt1b	100	87.189	ENSMMOG00000003327	scrt1b	100	87.189	Mola_mola
ENSLOCG00000007573	scrt1b	97	67.974	ENSMMOG00000009272	scrt2	97	67.974	Mola_mola
ENSLOCG00000007573	scrt1b	99	77.852	ENSMMOG00000018345	-	99	77.852	Mola_mola
ENSLOCG00000007573	scrt1b	97	69.424	ENSMALG00000013656	scrt2	96	69.424	Monopterus_albus
ENSLOCG00000007573	scrt1b	100	89.324	ENSMALG00000012704	scrt1b	100	89.324	Monopterus_albus
ENSLOCG00000007573	scrt1b	51	83.688	ENSNGAG00000020815	Scrt2	71	82.192	Nannospalax_galili
ENSLOCG00000007573	scrt1b	99	78.188	ENSNBRG00000014882	-	99	78.188	Neolamprologus_brichardi
ENSLOCG00000007573	scrt1b	97	71.014	ENSNBRG00000007221	scrt2	96	71.014	Neolamprologus_brichardi
ENSLOCG00000007573	scrt1b	100	86.833	ENSNBRG00000013983	scrt1b	100	86.833	Neolamprologus_brichardi
ENSLOCG00000007573	scrt1b	97	67.314	ENSONIG00000016758	scrt2	97	67.638	Oreochromis_niloticus
ENSLOCG00000007573	scrt1b	100	88.612	ENSONIG00000006007	scrt1b	100	88.612	Oreochromis_niloticus
ENSLOCG00000007573	scrt1b	97	73.529	ENSONIG00000019809	-	100	73.529	Oreochromis_niloticus
ENSLOCG00000007573	scrt1b	96	62.681	ENSONIG00000003152	-	96	62.681	Oreochromis_niloticus
ENSLOCG00000007573	scrt1b	99	75.667	ENSORLG00000022825	-	99	75.667	Oryzias_latipes
ENSLOCG00000007573	scrt1b	97	68.285	ENSORLG00000024051	scrt2	97	68.285	Oryzias_latipes
ENSLOCG00000007573	scrt1b	100	88.256	ENSORLG00000025651	scrt1b	100	88.256	Oryzias_latipes
ENSLOCG00000007573	scrt1b	100	88.256	ENSORLG00020012967	scrt1b	100	88.256	Oryzias_latipes_hni
ENSLOCG00000007573	scrt1b	97	68.285	ENSORLG00020011478	scrt2	97	68.285	Oryzias_latipes_hni
ENSLOCG00000007573	scrt1b	97	68.285	ENSORLG00015005524	scrt2	97	68.285	Oryzias_latipes_hsok
ENSLOCG00000007573	scrt1b	99	75.333	ENSORLG00015010104	-	99	75.333	Oryzias_latipes_hsok
ENSLOCG00000007573	scrt1b	100	88.256	ENSORLG00015019165	scrt1b	100	88.256	Oryzias_latipes_hsok
ENSLOCG00000007573	scrt1b	99	78.523	ENSOMEG00000000286	-	99	78.523	Oryzias_melastigma
ENSLOCG00000007573	scrt1b	100	88.256	ENSOMEG00000003925	scrt1b	100	88.256	Oryzias_melastigma
ENSLOCG00000007573	scrt1b	97	68.608	ENSOMEG00000002661	scrt2	97	68.608	Oryzias_melastigma
ENSLOCG00000007573	scrt1b	100	93.548	ENSPKIG00000022303	SCRT1	100	93.548	Paramormyrops_kingsleyae
ENSLOCG00000007573	scrt1b	100	94.624	ENSPKIG00000020085	scrt1a	100	94.624	Paramormyrops_kingsleyae
ENSLOCG00000007573	scrt1b	99	76.174	ENSPMGG00000021402	-	99	76.174	Periophthalmus_magnuspinnatus
ENSLOCG00000007573	scrt1b	100	86.429	ENSPMGG00000002260	scrt1b	100	86.429	Periophthalmus_magnuspinnatus
ENSLOCG00000007573	scrt1b	97	74.460	ENSPMGG00000016561	scrt2	96	74.460	Periophthalmus_magnuspinnatus
ENSLOCG00000007573	scrt1b	99	77.104	ENSPFOG00000005616	-	99	77.104	Poecilia_formosa
ENSLOCG00000007573	scrt1b	97	67.638	ENSPFOG00000007738	scrt2	97	67.638	Poecilia_formosa
ENSLOCG00000007573	scrt1b	100	87.900	ENSPFOG00000017719	scrt1b	100	87.900	Poecilia_formosa
ENSLOCG00000007573	scrt1b	100	87.900	ENSPLAG00000009876	scrt1b	100	87.900	Poecilia_latipinna
ENSLOCG00000007573	scrt1b	97	72.563	ENSPLAG00000005765	scrt2	96	72.563	Poecilia_latipinna
ENSLOCG00000007573	scrt1b	99	77.104	ENSPLAG00000011718	-	99	77.104	Poecilia_latipinna
ENSLOCG00000007573	scrt1b	100	87.900	ENSPMEG00000013274	scrt1b	100	87.900	Poecilia_mexicana
ENSLOCG00000007573	scrt1b	97	72.563	ENSPMEG00000001538	scrt2	96	72.563	Poecilia_mexicana
ENSLOCG00000007573	scrt1b	99	77.104	ENSPMEG00000011706	-	99	77.104	Poecilia_mexicana
ENSLOCG00000007573	scrt1b	100	87.900	ENSPREG00000018985	scrt1b	100	87.900	Poecilia_reticulata
ENSLOCG00000007573	scrt1b	97	67.638	ENSPREG00000001147	scrt2	97	67.638	Poecilia_reticulata
ENSLOCG00000007573	scrt1b	99	76.431	ENSPREG00000012166	-	99	76.431	Poecilia_reticulata
ENSLOCG00000007573	scrt1b	97	71.377	ENSPNYG00000013109	scrt2	96	71.377	Pundamilia_nyererei
ENSLOCG00000007573	scrt1b	100	89.324	ENSPNYG00000017733	scrt1b	100	89.324	Pundamilia_nyererei
ENSLOCG00000007573	scrt1b	99	78.523	ENSPNYG00000008865	-	99	78.523	Pundamilia_nyererei
ENSLOCG00000007573	scrt1b	100	90.681	ENSPNAG00000017415	scrt1a	100	90.681	Pygocentrus_nattereri
ENSLOCG00000007573	scrt1b	98	84.000	ENSPNAG00000027880	-	99	84.000	Pygocentrus_nattereri
ENSLOCG00000007573	scrt1b	100	91.039	ENSSFOG00015001195	SCRT1	100	91.039	Scleropages_formosus
ENSLOCG00000007573	scrt1b	99	88.214	ENSSMAG00000019207	scrt1b	99	88.214	Scophthalmus_maximus
ENSLOCG00000007573	scrt1b	99	76.667	ENSSMAG00000005122	-	99	76.667	Scophthalmus_maximus
ENSLOCG00000007573	scrt1b	98	67.677	ENSSDUG00000001637	scrt2	96	67.677	Seriola_dumerili
ENSLOCG00000007573	scrt1b	100	89.680	ENSSDUG00000007752	scrt1b	100	89.680	Seriola_dumerili
ENSLOCG00000007573	scrt1b	99	79.195	ENSSDUG00000013215	-	99	79.195	Seriola_dumerili
ENSLOCG00000007573	scrt1b	99	79.195	ENSSLDG00000016454	-	99	79.195	Seriola_lalandi_dorsalis
ENSLOCG00000007573	scrt1b	97	67.638	ENSSLDG00000013565	scrt2	97	67.638	Seriola_lalandi_dorsalis
ENSLOCG00000007573	scrt1b	100	89.680	ENSSLDG00000017166	scrt1b	100	89.680	Seriola_lalandi_dorsalis
ENSLOCG00000007573	scrt1b	97	67.159	ENSSPUG00000018637	SCRT2	97	67.159	Sphenodon_punctatus
ENSLOCG00000007573	scrt1b	97	71.739	ENSSPAG00000014018	scrt2	96	71.739	Stegastes_partitus
ENSLOCG00000007573	scrt1b	100	89.680	ENSSPAG00000002200	scrt1b	100	89.680	Stegastes_partitus
ENSLOCG00000007573	scrt1b	99	77.181	ENSSPAG00000006788	-	99	78.859	Stegastes_partitus
ENSLOCG00000007573	scrt1b	83	71.552	ENSTGUG00000006801	SCRT2	99	71.552	Taeniopygia_guttata
ENSLOCG00000007573	scrt1b	97	69.416	ENSTRUG00000007620	scrt2	97	69.416	Takifugu_rubripes
ENSLOCG00000007573	scrt1b	99	78.114	ENSTRUG00000012719	-	99	78.114	Takifugu_rubripes
ENSLOCG00000007573	scrt1b	98	86.594	ENSTRUG00000011637	scrt1b	99	86.594	Takifugu_rubripes
ENSLOCG00000007573	scrt1b	86	78.601	ENSTRUG00000019558	-	81	78.601	Takifugu_rubripes
ENSLOCG00000007573	scrt1b	97	73.835	ENSTNIG00000012473	scrt2	97	73.835	Tetraodon_nigroviridis
ENSLOCG00000007573	scrt1b	100	86.121	ENSTNIG00000018384	scrt1b	100	86.121	Tetraodon_nigroviridis
ENSLOCG00000007573	scrt1b	100	87.544	ENSXCOG00000019675	scrt1b	100	87.544	Xiphophorus_couchianus
ENSLOCG00000007573	scrt1b	97	68.013	ENSXCOG00000014367	scrt2	97	68.013	Xiphophorus_couchianus
ENSLOCG00000007573	scrt1b	99	75.972	ENSXCOG00000019861	-	99	75.972	Xiphophorus_couchianus
ENSLOCG00000007573	scrt1b	97	67.638	ENSXMAG00000028567	scrt2	97	67.638	Xiphophorus_maculatus
ENSLOCG00000007573	scrt1b	99	76.768	ENSXMAG00000015353	-	99	76.768	Xiphophorus_maculatus
ENSLOCG00000007573	scrt1b	100	87.544	ENSXMAG00000027885	scrt1b	100	87.544	Xiphophorus_maculatus