EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000007944 (Gene tree)
Gene ID: 102697761
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 30263 bases
Position: chrLG14:15432241-15462503
Accession: 102697761
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000009696	XRN_N	PF03159.18	1.3e-96	1	1
ENSLOCP00000009687	XRN_N	PF03159.18	1.5e-96	1	1
ENSLOCP00000009671	XRN_N	PF03159.18	1.6e-96	1	1
ENSLOCP00000009654	XRN_N	PF03159.18	2.9e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000009707	-	5536	-	ENSLOCP00000009696	1729 (aa)	-	W5MMT7
ENSLOCT00000009698	-	6759	-	ENSLOCP00000009687	1711 (aa)	-	W5MMS8
ENSLOCT00000009665	-	6945	XM_006637816	ENSLOCP00000009654	1773 (aa)	XP_015216785	W5MMP5
ENSLOCT00000009682	-	6759	-	ENSLOCP00000009671	1711 (aa)	-	W5MMR2

Gene Model

Click here to download ENSLOCG00000007944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000007944's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000007944	xrn1	100	65.495	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSLOCG00000007944	xrn1	99	74.537	ENSAPOG00000000622	xrn1	99	76.880	Acanthochromis_polyacanthus
ENSLOCG00000007944	xrn1	98	64.794	ENSAMEG00000012538	XRN1	100	64.686	Ailuropoda_melanoleuca
ENSLOCG00000007944	xrn1	99	74.712	ENSACIG00000001057	xrn1	99	76.705	Amphilophus_citrinellus
ENSLOCG00000007944	xrn1	96	74.480	ENSAOCG00000014097	xrn1	100	74.460	Amphiprion_ocellaris
ENSLOCG00000007944	xrn1	100	67.003	ENSAPEG00000006620	xrn1	98	69.314	Amphiprion_percula
ENSLOCG00000007944	xrn1	96	72.975	ENSATEG00000009752	xrn1	99	74.491	Anabas_testudineus
ENSLOCG00000007944	xrn1	99	64.699	ENSAPLG00000004905	XRN1	100	64.868	Anas_platyrhynchos
ENSLOCG00000007944	xrn1	100	64.913	ENSACAG00000004985	XRN1	100	65.045	Anolis_carolinensis
ENSLOCG00000007944	xrn1	98	66.256	ENSANAG00000029013	XRN1	99	78.238	Aotus_nancymaae
ENSLOCG00000007944	xrn1	100	66.460	ENSACLG00000004806	xrn1	99	66.085	Astatotilapia_calliptera
ENSLOCG00000007944	xrn1	100	68.818	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSLOCG00000007944	xrn1	100	64.948	ENSBTAG00000011524	XRN1	100	65.235	Bos_taurus
ENSLOCG00000007944	xrn1	69	38.526	WBGene00012730	xrn-1	81	38.421	Caenorhabditis_elegans
ENSLOCG00000007944	xrn1	98	66.432	ENSCJAG00000001872	XRN1	99	67.976	Callithrix_jacchus
ENSLOCG00000007944	xrn1	98	65.182	ENSCAFG00000007783	XRN1	100	65.349	Canis_familiaris
ENSLOCG00000007944	xrn1	98	65.182	ENSCAFG00020009120	XRN1	99	79.624	Canis_lupus_dingo
ENSLOCG00000007944	xrn1	99	64.682	ENSCHIG00000019192	XRN1	99	64.854	Capra_hircus
ENSLOCG00000007944	xrn1	100	64.925	ENSTSYG00000002705	XRN1	100	65.040	Carlito_syrichta
ENSLOCG00000007944	xrn1	100	65.940	ENSCCAG00000034800	XRN1	99	82.306	Cebus_capucinus
ENSLOCG00000007944	xrn1	98	66.178	ENSCATG00000041794	XRN1	100	65.920	Cercocebus_atys
ENSLOCG00000007944	xrn1	100	64.500	ENSCLAG00000001451	XRN1	99	82.464	Chinchilla_lanigera
ENSLOCG00000007944	xrn1	98	65.716	ENSCSAG00000011265	XRN1	100	65.726	Chlorocebus_sabaeus
ENSLOCG00000007944	xrn1	54	94.805	ENSCHOG00000013961	-	56	94.805	Choloepus_hoffmanni
ENSLOCG00000007944	xrn1	71	45.370	ENSCSAVG00000008584	-	99	45.209	Ciona_savignyi
ENSLOCG00000007944	xrn1	98	66.061	ENSCANG00000037495	XRN1	99	82.148	Colobus_angolensis_palliatus
ENSLOCG00000007944	xrn1	99	65.282	ENSCGRG00001019411	Xrn1	99	81.833	Cricetulus_griseus_chok1gshd
ENSLOCG00000007944	xrn1	99	65.282	ENSCGRG00000012464	Xrn1	99	81.833	Cricetulus_griseus_crigri
ENSLOCG00000007944	xrn1	95	68.224	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSLOCG00000007944	xrn1	66	76.998	ENSCVAG00000013089	xrn1	99	76.821	Cyprinodon_variegatus
ENSLOCG00000007944	xrn1	100	71.429	ENSDARG00000091652	xrn1	98	84.567	Danio_rerio
ENSLOCG00000007944	xrn1	100	65.195	ENSDORG00000013833	Xrn1	100	65.387	Dipodomys_ordii
ENSLOCG00000007944	xrn1	72	40.080	FBgn0020261	pcm	74	40.159	Drosophila_melanogaster
ENSLOCG00000007944	xrn1	86	77.477	ENSETEG00000003978	XRN1	88	78.226	Echinops_telfairi
ENSLOCG00000007944	xrn1	89	76.705	ENSEASG00005002687	XRN1	99	82.780	Equus_asinus_asinus
ENSLOCG00000007944	xrn1	98	65.539	ENSECAG00000008301	XRN1	100	65.541	Equus_caballus
ENSLOCG00000007944	xrn1	92	68.652	ENSEEUG00000011323	XRN1	92	68.652	Erinaceus_europaeus
ENSLOCG00000007944	xrn1	100	70.532	ENSELUG00000000169	xrn1	100	70.588	Esox_lucius
ENSLOCG00000007944	xrn1	98	62.309	ENSFCAG00000027589	XRN1	99	84.211	Felis_catus
ENSLOCG00000007944	xrn1	100	65.965	ENSFALG00000007021	XRN1	100	65.965	Ficedula_albicollis
ENSLOCG00000007944	xrn1	100	64.229	ENSFDAG00000020494	XRN1	99	82.306	Fukomys_damarensis
ENSLOCG00000007944	xrn1	87	72.367	ENSGMOG00000006396	xrn1	87	72.597	Gadus_morhua
ENSLOCG00000007944	xrn1	100	65.982	ENSGALG00000002706	XRN1	100	65.982	Gallus_gallus
ENSLOCG00000007944	xrn1	100	64.391	ENSGACG00000014328	xrn1	100	64.799	Gasterosteus_aculeatus
ENSLOCG00000007944	xrn1	95	67.807	ENSGAGG00000017535	XRN1	99	68.059	Gopherus_agassizii
ENSLOCG00000007944	xrn1	100	65.803	ENSGGOG00000008047	XRN1	100	65.767	Gorilla_gorilla
ENSLOCG00000007944	xrn1	95	73.550	ENSHBUG00000005908	xrn1	98	74.743	Haplochromis_burtoni
ENSLOCG00000007944	xrn1	100	65.190	ENSHGLG00000014476	XRN1	99	82.306	Heterocephalus_glaber_female
ENSLOCG00000007944	xrn1	100	65.190	ENSHGLG00100015130	XRN1	99	82.306	Heterocephalus_glaber_male
ENSLOCG00000007944	xrn1	99	71.948	ENSHCOG00000014062	xrn1	99	74.878	Hippocampus_comes
ENSLOCG00000007944	xrn1	100	68.771	ENSIPUG00000015229	xrn1	100	69.011	Ictalurus_punctatus
ENSLOCG00000007944	xrn1	100	64.889	ENSSTOG00000013552	XRN1	99	82.148	Ictidomys_tridecemlineatus
ENSLOCG00000007944	xrn1	99	62.422	ENSJJAG00000010863	Xrn1	99	80.757	Jaculus_jaculus
ENSLOCG00000007944	xrn1	98	72.235	ENSKMAG00000021356	xrn1	95	79.872	Kryptolebias_marmoratus
ENSLOCG00000007944	xrn1	100	74.653	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSLOCG00000007944	xrn1	99	67.265	ENSLACG00000009020	XRN1	99	67.265	Latimeria_chalumnae
ENSLOCG00000007944	xrn1	62	77.230	ENSLAFG00000015426	XRN1	100	77.664	Loxodonta_africana
ENSLOCG00000007944	xrn1	98	66.237	ENSMFAG00000032599	XRN1	100	66.034	Macaca_fascicularis
ENSLOCG00000007944	xrn1	98	66.237	ENSMMUG00000014038	XRN1	100	66.034	Macaca_mulatta
ENSLOCG00000007944	xrn1	98	66.139	ENSMNEG00000034217	XRN1	100	65.977	Macaca_nemestrina
ENSLOCG00000007944	xrn1	94	75.621	ENSMAMG00000013219	xrn1	92	83.369	Mastacembelus_armatus
ENSLOCG00000007944	xrn1	100	66.404	ENSMZEG00005015099	xrn1	99	66.028	Maylandia_zebra
ENSLOCG00000007944	xrn1	99	63.751	ENSMGAG00000006333	XRN1	100	63.751	Meleagris_gallopavo
ENSLOCG00000007944	xrn1	99	64.888	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSLOCG00000007944	xrn1	57	81.359	ENSMOCG00000008665	Xrn1	99	81.359	Microtus_ochrogaster
ENSLOCG00000007944	xrn1	100	65.501	ENSMODG00000021236	XRN1	100	65.731	Monodelphis_domestica
ENSLOCG00000007944	xrn1	95	71.638	ENSMALG00000004098	xrn1	99	71.484	Monopterus_albus
ENSLOCG00000007944	xrn1	100	58.619	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSLOCG00000007944	xrn1	100	64.018	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSLOCG00000007944	xrn1	100	64.492	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSLOCG00000007944	xrn1	100	63.931	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSLOCG00000007944	xrn1	98	65.967	ENSMPUG00000012040	XRN1	100	65.806	Mustela_putorius_furo
ENSLOCG00000007944	xrn1	100	63.941	ENSMLUG00000016885	XRN1	100	63.941	Myotis_lucifugus
ENSLOCG00000007944	xrn1	57	77.567	ENSNGAG00000023964	Xrn1	99	77.883	Nannospalax_galili
ENSLOCG00000007944	xrn1	98	65.826	ENSNLEG00000004726	XRN1	100	65.632	Nomascus_leucogenys
ENSLOCG00000007944	xrn1	69	96.907	ENSMEUG00000014473	-	70	97.087	Notamacropus_eugenii
ENSLOCG00000007944	xrn1	72	71.154	ENSOPRG00000007337	-	72	71.451	Ochotona_princeps
ENSLOCG00000007944	xrn1	100	66.078	ENSONIG00000016673	xrn1	99	69.654	Oreochromis_niloticus
ENSLOCG00000007944	xrn1	92	63.263	ENSOANG00000006735	XRN1	99	63.450	Ornithorhynchus_anatinus
ENSLOCG00000007944	xrn1	100	64.892	ENSOCUG00000001861	XRN1	100	64.892	Oryctolagus_cuniculus
ENSLOCG00000007944	xrn1	99	75.385	ENSORLG00000013005	xrn1	98	74.962	Oryzias_latipes
ENSLOCG00000007944	xrn1	98	73.676	ENSORLG00020005559	xrn1	100	73.095	Oryzias_latipes_hni
ENSLOCG00000007944	xrn1	99	74.846	ENSORLG00015022523	xrn1	100	74.424	Oryzias_latipes_hsok
ENSLOCG00000007944	xrn1	100	75.520	ENSOMEG00000015397	xrn1	100	77.173	Oryzias_melastigma
ENSLOCG00000007944	xrn1	100	63.809	ENSOGAG00000000170	XRN1	100	63.809	Otolemur_garnettii
ENSLOCG00000007944	xrn1	99	65.252	ENSOARG00000006343	XRN1	99	65.367	Ovis_aries
ENSLOCG00000007944	xrn1	100	65.727	ENSPPAG00000010180	XRN1	100	65.727	Pan_paniscus
ENSLOCG00000007944	xrn1	98	65.634	ENSPPRG00000007125	XRN1	100	65.764	Panthera_pardus
ENSLOCG00000007944	xrn1	98	65.693	ENSPTIG00000021081	XRN1	100	65.765	Panthera_tigris_altaica
ENSLOCG00000007944	xrn1	100	65.593	ENSPTRG00000015482	XRN1	100	65.593	Pan_troglodytes
ENSLOCG00000007944	xrn1	98	66.237	ENSPANG00000010638	XRN1	100	65.977	Papio_anubis
ENSLOCG00000007944	xrn1	100	65.114	ENSPSIG00000018050	XRN1	100	65.247	Pelodiscus_sinensis
ENSLOCG00000007944	xrn1	56	81.804	ENSPMGG00000002648	xrn1	99	82.616	Periophthalmus_magnuspinnatus
ENSLOCG00000007944	xrn1	57	81.675	ENSPEMG00000020610	Xrn1	99	81.675	Peromyscus_maniculatus_bairdii
ENSLOCG00000007944	xrn1	64	51.883	ENSPMAG00000002975	xrn1	99	50.126	Petromyzon_marinus
ENSLOCG00000007944	xrn1	100	69.199	ENSPCIG00000028735	XRN1	99	82.437	Phascolarctos_cinereus
ENSLOCG00000007944	xrn1	92	68.836	ENSPFOG00000013932	xrn1	99	68.851	Poecilia_formosa
ENSLOCG00000007944	xrn1	92	68.675	ENSPLAG00000021653	xrn1	99	68.879	Poecilia_latipinna
ENSLOCG00000007944	xrn1	90	69.334	ENSPMEG00000003076	xrn1	95	69.413	Poecilia_mexicana
ENSLOCG00000007944	xrn1	98	72.798	ENSPREG00000021147	xrn1	100	72.699	Poecilia_reticulata
ENSLOCG00000007944	xrn1	100	65.823	ENSPPYG00000014172	XRN1	100	65.767	Pongo_abelii
ENSLOCG00000007944	xrn1	83	70.931	ENSPCAG00000005638	XRN1	92	71.012	Procavia_capensis
ENSLOCG00000007944	xrn1	100	65.708	ENSPCOG00000013089	XRN1	99	81.675	Propithecus_coquereli
ENSLOCG00000007944	xrn1	91	73.838	ENSPVAG00000016265	XRN1	96	73.838	Pteropus_vampyrus
ENSLOCG00000007944	xrn1	95	74.251	ENSPNYG00000010570	xrn1	99	74.402	Pundamilia_nyererei
ENSLOCG00000007944	xrn1	100	68.325	ENSPNAG00000023531	xrn1	100	68.439	Pygocentrus_nattereri
ENSLOCG00000007944	xrn1	100	64.298	ENSRNOG00000042951	Xrn1	100	64.525	Rattus_norvegicus
ENSLOCG00000007944	xrn1	98	65.669	ENSRBIG00000041227	XRN1	100	65.170	Rhinopithecus_bieti
ENSLOCG00000007944	xrn1	67	55.435	YGL173C	XRN1	74	55.435	Saccharomyces_cerevisiae
ENSLOCG00000007944	xrn1	98	66.120	ENSSBOG00000029561	XRN1	100	65.690	Saimiri_boliviensis_boliviensis
ENSLOCG00000007944	xrn1	99	65.076	ENSSHAG00000016207	XRN1	100	65.250	Sarcophilus_harrisii
ENSLOCG00000007944	xrn1	100	67.720	ENSSFOG00015024211	xrn1	100	67.720	Scleropages_formosus
ENSLOCG00000007944	xrn1	97	73.866	ENSSMAG00000016534	xrn1	99	73.802	Scophthalmus_maximus
ENSLOCG00000007944	xrn1	90	76.799	ENSSDUG00000010306	xrn1	97	76.992	Seriola_dumerili
ENSLOCG00000007944	xrn1	99	74.652	ENSSLDG00000021543	xrn1	99	75.881	Seriola_lalandi_dorsalis
ENSLOCG00000007944	xrn1	60	71.370	ENSSARG00000007741	-	75	71.370	Sorex_araneus
ENSLOCG00000007944	xrn1	100	65.921	ENSTGUG00000008498	XRN1	100	65.921	Taeniopygia_guttata
ENSLOCG00000007944	xrn1	99	72.080	ENSTRUG00000004895	xrn1	96	81.562	Takifugu_rubripes
ENSLOCG00000007944	xrn1	96	71.956	ENSTNIG00000017615	xrn1	100	62.957	Tetraodon_nigroviridis
ENSLOCG00000007944	xrn1	83	87.097	ENSTBEG00000003256	XRN1	85	85.969	Tupaia_belangeri
ENSLOCG00000007944	xrn1	100	61.121	ENSTTRG00000012914	XRN1	100	61.442	Tursiops_truncatus
ENSLOCG00000007944	xrn1	96	66.025	ENSUAMG00000001608	XRN1	99	78.673	Ursus_americanus
ENSLOCG00000007944	xrn1	98	65.268	ENSUMAG00000013625	XRN1	100	65.770	Ursus_maritimus
ENSLOCG00000007944	xrn1	98	63.038	ENSVPAG00000004690	XRN1	100	63.037	Vicugna_pacos
ENSLOCG00000007944	xrn1	96	67.368	ENSVVUG00000024461	XRN1	99	82.464	Vulpes_vulpes
ENSLOCG00000007944	xrn1	100	64.564	ENSXETG00000000619	xrn1	97	87.634	Xenopus_tropicalis
ENSLOCG00000007944	xrn1	93	75.161	ENSXCOG00000007917	xrn1	96	75.182	Xiphophorus_couchianus
ENSLOCG00000007944	xrn1	96	72.538	ENSXMAG00000018320	xrn1	98	75.856	Xiphophorus_maculatus