EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000007986 (Gene tree)
Gene ID: 102686275
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 13681 bases
Position: chrLG10:13868995-13882675
Accession: 102686275
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000009700	RRM_1	PF00076.22	1.7e-16	1	2
ENSLOCP00000009700	RRM_1	PF00076.22	1.7e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000009711	-	1512	XM_006634965	ENSLOCP00000009700	504 (aa)	-	W5MMU1

Gene Model

Click here to download ENSLOCG00000007986's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000007986's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000007986	rnpc3	96	60.736	ENSG00000185946	RNPC3	100	62.319	Homo_sapiens
ENSLOCG00000007986	rnpc3	99	62.795	ENSAPOG00000017371	rnpc3	99	65.347	Acanthochromis_polyacanthus
ENSLOCG00000007986	rnpc3	96	60.204	ENSAMEG00000001694	RNPC3	94	57.959	Ailuropoda_melanoleuca
ENSLOCG00000007986	rnpc3	99	59.055	ENSACIG00000021043	rnpc3	99	62.083	Amphilophus_citrinellus
ENSLOCG00000007986	rnpc3	99	62.109	ENSAOCG00000014052	rnpc3	98	64.902	Amphiprion_ocellaris
ENSLOCG00000007986	rnpc3	99	61.914	ENSAPEG00000008739	rnpc3	98	64.706	Amphiprion_percula
ENSLOCG00000007986	rnpc3	99	59.844	ENSATEG00000021263	rnpc3	99	62.378	Anabas_testudineus
ENSLOCG00000007986	rnpc3	89	59.292	ENSAPLG00000015605	RNPC3	99	61.810	Anas_platyrhynchos
ENSLOCG00000007986	rnpc3	96	60.986	ENSACAG00000002029	RNPC3	97	60.643	Anolis_carolinensis
ENSLOCG00000007986	rnpc3	96	60.285	ENSANAG00000019950	RNPC3	95	58.045	Aotus_nancymaae
ENSLOCG00000007986	rnpc3	99	61.660	ENSACLG00000014702	rnpc3	99	64.625	Astatotilapia_calliptera
ENSLOCG00000007986	rnpc3	99	62.823	ENSAMXG00000033372	rnpc3	99	62.897	Astyanax_mexicanus
ENSLOCG00000007986	rnpc3	96	60.736	ENSBTAG00000019091	RNPC3	95	58.487	Bos_taurus
ENSLOCG00000007986	rnpc3	96	59.631	ENSCJAG00000035686	RNPC3	94	59.631	Callithrix_jacchus
ENSLOCG00000007986	rnpc3	96	60.736	ENSCAFG00000019972	RNPC3	94	58.487	Canis_familiaris
ENSLOCG00000007986	rnpc3	96	60.736	ENSCAFG00020011300	RNPC3	94	58.487	Canis_lupus_dingo
ENSLOCG00000007986	rnpc3	96	60.243	ENSCHIG00000020361	RNPC3	95	58.282	Capra_hircus
ENSLOCG00000007986	rnpc3	96	61.020	ENSTSYG00000030256	RNPC3	95	61.020	Carlito_syrichta
ENSLOCG00000007986	rnpc3	86	51.613	ENSCAPG00000013600	RNPC3	97	51.168	Cavia_aperea
ENSLOCG00000007986	rnpc3	96	59.509	ENSCPOG00000031638	RNPC3	95	59.509	Cavia_porcellus
ENSLOCG00000007986	rnpc3	96	60.532	ENSCCAG00000024301	RNPC3	95	58.571	Cebus_capucinus
ENSLOCG00000007986	rnpc3	96	60.736	ENSCATG00000002086	RNPC3	94	58.487	Cercocebus_atys
ENSLOCG00000007986	rnpc3	96	59.100	ENSCLAG00000005169	RNPC3	95	59.100	Chinchilla_lanigera
ENSLOCG00000007986	rnpc3	96	60.736	ENSCSAG00000001519	RNPC3	94	58.487	Chlorocebus_sabaeus
ENSLOCG00000007986	rnpc3	97	59.073	ENSCPBG00000028311	RNPC3	95	61.167	Chrysemys_picta_bellii
ENSLOCG00000007986	rnpc3	96	60.327	ENSCANG00000031444	RNPC3	94	58.078	Colobus_angolensis_palliatus
ENSLOCG00000007986	rnpc3	96	59.388	ENSCGRG00001019276	Rnpc3	95	57.755	Cricetulus_griseus_chok1gshd
ENSLOCG00000007986	rnpc3	89	57.743	ENSCGRG00000000053	Rnpc3	99	57.743	Cricetulus_griseus_crigri
ENSLOCG00000007986	rnpc3	98	57.285	ENSCSEG00000013475	rnpc3	98	61.078	Cynoglossus_semilaevis
ENSLOCG00000007986	rnpc3	99	61.673	ENSCVAG00000002645	rnpc3	99	62.646	Cyprinodon_variegatus
ENSLOCG00000007986	rnpc3	98	67.000	ENSDARG00000011247	rnpc3	95	72.316	Danio_rerio
ENSLOCG00000007986	rnpc3	96	60.041	ENSDNOG00000047498	-	95	59.836	Dasypus_novemcinctus
ENSLOCG00000007986	rnpc3	96	59.631	ENSDNOG00000044555	-	95	59.426	Dasypus_novemcinctus
ENSLOCG00000007986	rnpc3	96	60.327	ENSDORG00000027343	Rnpc3	95	58.078	Dipodomys_ordii
ENSLOCG00000007986	rnpc3	96	50.198	ENSEBUG00000002068	rnpc3	96	50.099	Eptatretus_burgeri
ENSLOCG00000007986	rnpc3	96	61.633	ENSEASG00005015957	RNPC3	94	59.388	Equus_asinus_asinus
ENSLOCG00000007986	rnpc3	96	61.633	ENSECAG00000021148	RNPC3	94	59.388	Equus_caballus
ENSLOCG00000007986	rnpc3	99	64.286	ENSELUG00000002264	rnpc3	99	63.707	Esox_lucius
ENSLOCG00000007986	rnpc3	97	59.919	ENSFCAG00000024312	RNPC3	95	57.895	Felis_catus
ENSLOCG00000007986	rnpc3	89	61.810	ENSFALG00000002580	RNPC3	99	63.158	Ficedula_albicollis
ENSLOCG00000007986	rnpc3	96	59.878	ENSFDAG00000019948	RNPC3	95	57.637	Fukomys_damarensis
ENSLOCG00000007986	rnpc3	97	57.490	ENSFHEG00000020647	rnpc3	98	55.263	Fundulus_heteroclitus
ENSLOCG00000007986	rnpc3	99	61.584	ENSGMOG00000019213	rnpc3	98	60.913	Gadus_morhua
ENSLOCG00000007986	rnpc3	97	60.966	ENSGALG00000005162	RNPC3	89	61.167	Gallus_gallus
ENSLOCG00000007986	rnpc3	98	58.580	ENSGAFG00000017236	rnpc3	99	59.961	Gambusia_affinis
ENSLOCG00000007986	rnpc3	99	62.028	ENSGACG00000002048	rnpc3	99	61.942	Gasterosteus_aculeatus
ENSLOCG00000007986	rnpc3	97	59.319	ENSGAGG00000008438	RNPC3	95	60.721	Gopherus_agassizii
ENSLOCG00000007986	rnpc3	96	52.772	ENSGGOG00000026201	-	94	52.772	Gorilla_gorilla
ENSLOCG00000007986	rnpc3	82	66.667	ENSHBUG00000015966	rnpc3	85	66.667	Haplochromis_burtoni
ENSLOCG00000007986	rnpc3	96	60.772	ENSHGLG00000001708	RNPC3	95	57.637	Heterocephalus_glaber_female
ENSLOCG00000007986	rnpc3	96	60.772	ENSHGLG00100003005	RNPC3	95	57.637	Heterocephalus_glaber_male
ENSLOCG00000007986	rnpc3	97	60.729	ENSHCOG00000017135	rnpc3	97	63.158	Hippocampus_comes
ENSLOCG00000007986	rnpc3	99	63.147	ENSIPUG00000002916	rnpc3	99	64.016	Ictalurus_punctatus
ENSLOCG00000007986	rnpc3	96	61.224	ENSSTOG00000025020	RNPC3	95	58.078	Ictidomys_tridecemlineatus
ENSLOCG00000007986	rnpc3	96	60.081	ENSJJAG00000010203	Rnpc3	96	59.394	Jaculus_jaculus
ENSLOCG00000007986	rnpc3	99	61.858	ENSKMAG00000017358	rnpc3	99	62.425	Kryptolebias_marmoratus
ENSLOCG00000007986	rnpc3	98	60.636	ENSLBEG00000024901	rnpc3	97	64.215	Labrus_bergylta
ENSLOCG00000007986	rnpc3	98	65.070	ENSLACG00000005720	RNPC3	92	65.538	Latimeria_chalumnae
ENSLOCG00000007986	rnpc3	96	57.464	ENSLAFG00000032342	RNPC3	95	57.260	Loxodonta_africana
ENSLOCG00000007986	rnpc3	97	46.341	ENSMFAG00000002917	-	96	44.898	Macaca_fascicularis
ENSLOCG00000007986	rnpc3	96	60.736	ENSMFAG00000002004	RNPC3	94	58.487	Macaca_fascicularis
ENSLOCG00000007986	rnpc3	80	57.075	ENSMMUG00000002098	-	86	57.075	Macaca_mulatta
ENSLOCG00000007986	rnpc3	96	60.532	ENSMMUG00000018039	RNPC3	94	58.282	Macaca_mulatta
ENSLOCG00000007986	rnpc3	96	57.055	ENSMNEG00000033950	RNPC3	94	56.851	Macaca_nemestrina
ENSLOCG00000007986	rnpc3	97	43.061	ENSMNEG00000029209	-	96	43.265	Macaca_nemestrina
ENSLOCG00000007986	rnpc3	96	60.736	ENSMLEG00000033628	RNPC3	94	58.487	Mandrillus_leucophaeus
ENSLOCG00000007986	rnpc3	97	46.707	ENSMLEG00000034644	-	96	46.307	Mandrillus_leucophaeus
ENSLOCG00000007986	rnpc3	99	55.992	ENSMAMG00000007496	rnpc3	99	58.743	Mastacembelus_armatus
ENSLOCG00000007986	rnpc3	99	60.542	ENSMZEG00005020233	rnpc3	99	63.689	Maylandia_zebra
ENSLOCG00000007986	rnpc3	89	60.927	ENSMGAG00000006381	RNPC3	99	61.674	Meleagris_gallopavo
ENSLOCG00000007986	rnpc3	96	60.081	ENSMAUG00000001358	Rnpc3	95	58.452	Mesocricetus_auratus
ENSLOCG00000007986	rnpc3	97	60.692	ENSMICG00000029591	RNPC3	95	60.692	Microcebus_murinus
ENSLOCG00000007986	rnpc3	96	59.388	ENSMOCG00000013423	Rnpc3	94	57.755	Microtus_ochrogaster
ENSLOCG00000007986	rnpc3	99	57.937	ENSMMOG00000005309	rnpc3	99	55.159	Mola_mola
ENSLOCG00000007986	rnpc3	97	58.788	ENSMODG00000002946	RNPC3	96	58.586	Monodelphis_domestica
ENSLOCG00000007986	rnpc3	98	59.646	ENSMALG00000015471	rnpc3	99	58.383	Monopterus_albus
ENSLOCG00000007986	rnpc3	96	60.692	MGP_CAROLIEiJ_G0025555	Rnpc3	96	61.100	Mus_caroli
ENSLOCG00000007986	rnpc3	96	60.941	ENSMUSG00000027981	Rnpc3	99	60.390	Mus_musculus
ENSLOCG00000007986	rnpc3	97	59.838	MGP_PahariEiJ_G0027001	Rnpc3	97	58.215	Mus_pahari
ENSLOCG00000007986	rnpc3	96	61.633	MGP_SPRETEiJ_G0026505	Rnpc3	96	59.305	Mus_spretus
ENSLOCG00000007986	rnpc3	96	60.692	ENSMPUG00000007349	RNPC3	94	58.452	Mustela_putorius_furo
ENSLOCG00000007986	rnpc3	96	60.204	ENSMLUG00000028743	RNPC3	94	58.571	Myotis_lucifugus
ENSLOCG00000007986	rnpc3	96	60.692	ENSNGAG00000010939	Rnpc3	95	58.452	Nannospalax_galili
ENSLOCG00000007986	rnpc3	99	61.660	ENSNBRG00000012196	rnpc3	96	64.625	Neolamprologus_brichardi
ENSLOCG00000007986	rnpc3	96	60.408	ENSNLEG00000012013	RNPC3	95	58.163	Nomascus_leucogenys
ENSLOCG00000007986	rnpc3	96	60.736	ENSODEG00000007612	RNPC3	95	59.016	Octodon_degus
ENSLOCG00000007986	rnpc3	99	60.980	ENSONIG00000004770	rnpc3	99	64.173	Oreochromis_niloticus
ENSLOCG00000007986	rnpc3	91	61.853	ENSOANG00000008220	RNPC3	99	62.232	Ornithorhynchus_anatinus
ENSLOCG00000007986	rnpc3	96	60.202	ENSOCUG00000004016	RNPC3	95	59.878	Oryctolagus_cuniculus
ENSLOCG00000007986	rnpc3	98	62.249	ENSORLG00000005694	rnpc3	98	62.903	Oryzias_latipes
ENSLOCG00000007986	rnpc3	98	61.972	ENSORLG00020005513	rnpc3	98	62.626	Oryzias_latipes_hni
ENSLOCG00000007986	rnpc3	98	61.895	ENSORLG00015002179	rnpc3	98	62.298	Oryzias_latipes_hsok
ENSLOCG00000007986	rnpc3	98	59.557	ENSOMEG00000017737	rnpc3	98	62.777	Oryzias_melastigma
ENSLOCG00000007986	rnpc3	96	61.145	ENSOGAG00000026182	RNPC3	95	61.145	Otolemur_garnettii
ENSLOCG00000007986	rnpc3	96	60.243	ENSOARG00000018719	RNPC3	95	58.282	Ovis_aries
ENSLOCG00000007986	rnpc3	96	60.612	ENSPPAG00000037459	RNPC3	95	58.367	Pan_paniscus
ENSLOCG00000007986	rnpc3	97	53.564	ENSPPAG00000030278	-	97	53.564	Pan_paniscus
ENSLOCG00000007986	rnpc3	97	59.959	ENSPPRG00000020246	RNPC3	95	57.927	Panthera_pardus
ENSLOCG00000007986	rnpc3	97	59.959	ENSPTIG00000009887	RNPC3	97	57.927	Panthera_tigris_altaica
ENSLOCG00000007986	rnpc3	96	60.532	ENSPTRG00000033902	RNPC3	95	58.282	Pan_troglodytes
ENSLOCG00000007986	rnpc3	97	52.953	ENSPTRG00000044227	-	97	52.953	Pan_troglodytes
ENSLOCG00000007986	rnpc3	96	60.656	ENSPANG00000012137	RNPC3	94	58.402	Papio_anubis
ENSLOCG00000007986	rnpc3	97	49.899	ENSPANG00000029957	-	97	47.284	Papio_anubis
ENSLOCG00000007986	rnpc3	99	66.733	ENSPKIG00000008828	rnpc3	99	67.589	Paramormyrops_kingsleyae
ENSLOCG00000007986	rnpc3	64	58.859	ENSPSIG00000007396	RNPC3	99	59.760	Pelodiscus_sinensis
ENSLOCG00000007986	rnpc3	99	56.548	ENSPMGG00000011742	rnpc3	95	57.851	Periophthalmus_magnuspinnatus
ENSLOCG00000007986	rnpc3	92	56.317	ENSPEMG00000020112	Rnpc3	99	55.752	Peromyscus_maniculatus_bairdii
ENSLOCG00000007986	rnpc3	97	41.682	ENSPMAG00000003778	rnpc3	97	42.035	Petromyzon_marinus
ENSLOCG00000007986	rnpc3	97	60.808	ENSPCIG00000004415	-	96	58.384	Phascolarctos_cinereus
ENSLOCG00000007986	rnpc3	99	58.431	ENSPFOG00000009895	rnpc3	99	61.341	Poecilia_formosa
ENSLOCG00000007986	rnpc3	99	58.431	ENSPLAG00000012023	rnpc3	99	61.341	Poecilia_latipinna
ENSLOCG00000007986	rnpc3	99	58.627	ENSPMEG00000003663	rnpc3	99	61.538	Poecilia_mexicana
ENSLOCG00000007986	rnpc3	98	58.918	ENSPREG00000010206	rnpc3	98	61.723	Poecilia_reticulata
ENSLOCG00000007986	rnpc3	80	55.637	ENSPPYG00000001102	RNPC3	93	52.941	Pongo_abelii
ENSLOCG00000007986	rnpc3	99	61.462	ENSPNYG00000020603	rnpc3	99	64.427	Pundamilia_nyererei
ENSLOCG00000007986	rnpc3	96	59.674	ENSRNOG00000017310	Rnpc3	95	58.045	Rattus_norvegicus
ENSLOCG00000007986	rnpc3	96	55.918	ENSRBIG00000043897	RNPC3	94	53.878	Rhinopithecus_bieti
ENSLOCG00000007986	rnpc3	96	60.736	ENSRROG00000032334	RNPC3	94	58.487	Rhinopithecus_roxellana
ENSLOCG00000007986	rnpc3	96	60.451	ENSSBOG00000024473	RNPC3	95	58.197	Saimiri_boliviensis_boliviensis
ENSLOCG00000007986	rnpc3	97	60.282	ENSSHAG00000011859	RNPC3	96	58.097	Sarcophilus_harrisii
ENSLOCG00000007986	rnpc3	99	68.651	ENSSFOG00015013055	rnpc3	99	69.231	Scleropages_formosus
ENSLOCG00000007986	rnpc3	99	58.994	ENSSMAG00000020346	rnpc3	99	58.607	Scophthalmus_maximus
ENSLOCG00000007986	rnpc3	99	61.165	ENSSDUG00000006600	rnpc3	99	63.883	Seriola_dumerili
ENSLOCG00000007986	rnpc3	99	61.359	ENSSLDG00000007979	rnpc3	99	63.689	Seriola_lalandi_dorsalis
ENSLOCG00000007986	rnpc3	97	57.724	ENSSPUG00000003872	-	92	57.927	Sphenodon_punctatus
ENSLOCG00000007986	rnpc3	95	59.671	ENSSPUG00000008539	-	92	62.140	Sphenodon_punctatus
ENSLOCG00000007986	rnpc3	99	62.376	ENSSPAG00000005633	rnpc3	99	62.970	Stegastes_partitus
ENSLOCG00000007986	rnpc3	96	60.451	ENSSSCG00000037254	RNPC3	95	59.631	Sus_scrofa
ENSLOCG00000007986	rnpc3	89	60.841	ENSTGUG00000004795	-	99	63.053	Taeniopygia_guttata
ENSLOCG00000007986	rnpc3	99	60.594	ENSTNIG00000018963	rnpc3	99	63.366	Tetraodon_nigroviridis
ENSLOCG00000007986	rnpc3	96	60.736	ENSUMAG00000007775	RNPC3	96	58.487	Ursus_maritimus
ENSLOCG00000007986	rnpc3	96	60.736	ENSVVUG00000000331	RNPC3	94	58.487	Vulpes_vulpes
ENSLOCG00000007986	rnpc3	96	49.602	ENSXETG00000025027	rnpc3	97	48.814	Xenopus_tropicalis
ENSLOCG00000007986	rnpc3	53	60.300	ENSXCOG00000005013	rnpc3	99	56.250	Xiphophorus_couchianus
ENSLOCG00000007986	rnpc3	97	59.200	ENSXMAG00000006495	rnpc3	99	60.707	Xiphophorus_maculatus