EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000008251 (Gene tree)
Gene ID: 102684960
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 15405 bases
Position: chrLG20:13857481-13872885
Accession: 102684960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000010014	PRP21_like_P	PF12230.8	9.7e-54	1	1
ENSLOCP00000010014	Surp	PF01805.20	5.1e-46	1	2
ENSLOCP00000010014	Surp	PF01805.20	5.1e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000010026	-	6885	XM_006640288	ENSLOCP00000010014	791 (aa)	XP_006640352	W5MNQ5

Gene Model

Click here to download ENSLOCG00000008251's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000008251's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000008251	sf3a1	97	87.273	ENSG00000099995	SF3A1	100	85.088	Homo_sapiens
ENSLOCG00000008251	sf3a1	99	88.734	ENSAPOG00000020465	sf3a1	100	88.101	Acanthochromis_polyacanthus
ENSLOCG00000008251	sf3a1	97	86.883	ENSAMEG00000007737	SF3A1	100	84.875	Ailuropoda_melanoleuca
ENSLOCG00000008251	sf3a1	99	88.608	ENSACIG00000020672	sf3a1	100	88.228	Amphilophus_citrinellus
ENSLOCG00000008251	sf3a1	99	88.734	ENSAOCG00000003060	sf3a1	100	88.101	Amphiprion_ocellaris
ENSLOCG00000008251	sf3a1	99	88.861	ENSAPEG00000010735	sf3a1	100	88.228	Amphiprion_percula
ENSLOCG00000008251	sf3a1	97	88.166	ENSATEG00000021201	sf3a1	98	87.340	Anabas_testudineus
ENSLOCG00000008251	sf3a1	96	87.516	ENSAPLG00000009057	SF3A1	100	85.987	Anas_platyrhynchos
ENSLOCG00000008251	sf3a1	99	81.863	ENSACAG00000009415	SF3A1	100	81.058	Anolis_carolinensis
ENSLOCG00000008251	sf3a1	97	86.623	ENSANAG00000032045	SF3A1	100	84.837	Aotus_nancymaae
ENSLOCG00000008251	sf3a1	99	87.579	ENSACLG00000012622	sf3a1	100	87.706	Astatotilapia_calliptera
ENSLOCG00000008251	sf3a1	99	88.535	ENSAMXG00000005382	sf3a1	99	88.408	Astyanax_mexicanus
ENSLOCG00000008251	sf3a1	97	87.013	ENSBTAG00000003390	SF3A1	100	85.213	Bos_taurus
ENSLOCG00000008251	sf3a1	83	45.273	WBGene00004188	prp-21	58	51.916	Caenorhabditis_elegans
ENSLOCG00000008251	sf3a1	97	86.753	ENSCJAG00000010370	SF3A1	100	84.962	Callithrix_jacchus
ENSLOCG00000008251	sf3a1	97	86.883	ENSCAFG00000012559	SF3A1	100	85.088	Canis_familiaris
ENSLOCG00000008251	sf3a1	97	86.883	ENSCAFG00020000838	SF3A1	100	85.088	Canis_lupus_dingo
ENSLOCG00000008251	sf3a1	97	87.143	ENSCHIG00000018642	SF3A1	100	85.338	Capra_hircus
ENSLOCG00000008251	sf3a1	97	86.883	ENSTSYG00000004739	SF3A1	100	85.088	Carlito_syrichta
ENSLOCG00000008251	sf3a1	95	70.292	ENSCAPG00000015414	SF3A1	98	70.292	Cavia_aperea
ENSLOCG00000008251	sf3a1	97	87.273	ENSCPOG00000014589	SF3A1	100	85.088	Cavia_porcellus
ENSLOCG00000008251	sf3a1	97	86.623	ENSCCAG00000032006	SF3A1	100	84.837	Cebus_capucinus
ENSLOCG00000008251	sf3a1	97	86.883	ENSCATG00000029241	SF3A1	100	85.088	Cercocebus_atys
ENSLOCG00000008251	sf3a1	97	86.883	ENSCLAG00000006508	SF3A1	100	85.088	Chinchilla_lanigera
ENSLOCG00000008251	sf3a1	97	86.883	ENSCSAG00000009470	SF3A1	100	85.088	Chlorocebus_sabaeus
ENSLOCG00000008251	sf3a1	58	89.474	ENSCHOG00000005201	SF3A1	61	89.412	Choloepus_hoffmanni
ENSLOCG00000008251	sf3a1	99	84.906	ENSCPBG00000007595	SF3A1	100	84.528	Chrysemys_picta_bellii
ENSLOCG00000008251	sf3a1	97	52.417	ENSCING00000008526	-	97	52.118	Ciona_intestinalis
ENSLOCG00000008251	sf3a1	97	51.010	ENSCSAVG00000005608	-	93	65.862	Ciona_savignyi
ENSLOCG00000008251	sf3a1	97	86.883	ENSCANG00000033564	SF3A1	100	85.088	Colobus_angolensis_palliatus
ENSLOCG00000008251	sf3a1	96	86.894	ENSCGRG00001008933	Sf3a1	100	84.962	Cricetulus_griseus_chok1gshd
ENSLOCG00000008251	sf3a1	96	86.894	ENSCGRG00000006127	Sf3a1	100	84.962	Cricetulus_griseus_crigri
ENSLOCG00000008251	sf3a1	99	86.742	ENSCSEG00000010792	sf3a1	100	86.490	Cynoglossus_semilaevis
ENSLOCG00000008251	sf3a1	99	86.473	ENSCVAG00000004560	sf3a1	100	85.841	Cyprinodon_variegatus
ENSLOCG00000008251	sf3a1	99	88.325	ENSDARG00000041887	sf3a1	100	88.202	Danio_rerio
ENSLOCG00000008251	sf3a1	97	86.658	ENSDNOG00000010629	SF3A1	100	84.375	Dasypus_novemcinctus
ENSLOCG00000008251	sf3a1	97	87.273	ENSDORG00000005613	Sf3a1	100	85.088	Dipodomys_ordii
ENSLOCG00000008251	sf3a1	85	59.964	FBgn0266917	Sf3a1	51	69.014	Drosophila_melanogaster
ENSLOCG00000008251	sf3a1	85	85.863	ENSETEG00000017194	SF3A1	100	82.744	Echinops_telfairi
ENSLOCG00000008251	sf3a1	98	67.568	ENSEBUG00000001285	sf3a1	96	68.927	Eptatretus_burgeri
ENSLOCG00000008251	sf3a1	97	87.013	ENSEASG00005010254	SF3A1	100	85.213	Equus_asinus_asinus
ENSLOCG00000008251	sf3a1	97	87.013	ENSECAG00000023962	SF3A1	100	85.213	Equus_caballus
ENSLOCG00000008251	sf3a1	74	95.082	ENSEEUG00000003159	SF3A1	80	95.082	Erinaceus_europaeus
ENSLOCG00000008251	sf3a1	99	85.372	ENSELUG00000022578	sf3a1	100	85.372	Esox_lucius
ENSLOCG00000008251	sf3a1	97	87.013	ENSFCAG00000011932	SF3A1	100	85.213	Felis_catus
ENSLOCG00000008251	sf3a1	96	85.921	ENSFALG00000006944	SF3A1	100	84.422	Ficedula_albicollis
ENSLOCG00000008251	sf3a1	97	86.883	ENSFDAG00000009560	SF3A1	100	85.088	Fukomys_damarensis
ENSLOCG00000008251	sf3a1	100	87.783	ENSFHEG00000010866	sf3a1	100	87.863	Fundulus_heteroclitus
ENSLOCG00000008251	sf3a1	99	85.551	ENSGMOG00000016024	sf3a1	100	84.918	Gadus_morhua
ENSLOCG00000008251	sf3a1	96	87.500	ENSGALG00000007937	SF3A1	100	85.302	Gallus_gallus
ENSLOCG00000008251	sf3a1	99	87.105	ENSGAFG00000009111	sf3a1	100	86.346	Gambusia_affinis
ENSLOCG00000008251	sf3a1	99	84.887	ENSGACG00000011893	sf3a1	100	84.403	Gasterosteus_aculeatus
ENSLOCG00000008251	sf3a1	95	84.383	ENSGAGG00000000762	SF3A1	99	83.990	Gopherus_agassizii
ENSLOCG00000008251	sf3a1	97	87.273	ENSGGOG00000012631	SF3A1	100	85.088	Gorilla_gorilla
ENSLOCG00000008251	sf3a1	99	87.579	ENSHBUG00000015795	sf3a1	100	87.706	Haplochromis_burtoni
ENSLOCG00000008251	sf3a1	97	86.883	ENSHGLG00000007907	SF3A1	100	85.088	Heterocephalus_glaber_female
ENSLOCG00000008251	sf3a1	97	86.883	ENSHGLG00100013799	SF3A1	100	85.088	Heterocephalus_glaber_male
ENSLOCG00000008251	sf3a1	99	85.190	ENSHCOG00000015423	sf3a1	100	83.671	Hippocampus_comes
ENSLOCG00000008251	sf3a1	98	87.597	ENSIPUG00000002470	sf3a1	99	87.339	Ictalurus_punctatus
ENSLOCG00000008251	sf3a1	97	87.013	ENSSTOG00000013892	SF3A1	100	85.213	Ictidomys_tridecemlineatus
ENSLOCG00000008251	sf3a1	97	86.883	ENSJJAG00000022566	Sf3a1	100	84.856	Jaculus_jaculus
ENSLOCG00000008251	sf3a1	99	87.342	ENSKMAG00000002400	sf3a1	100	87.089	Kryptolebias_marmoratus
ENSLOCG00000008251	sf3a1	99	85.949	ENSLBEG00000022974	sf3a1	100	85.063	Labrus_bergylta
ENSLOCG00000008251	sf3a1	99	84.780	ENSLACG00000003565	SF3A1	100	83.899	Latimeria_chalumnae
ENSLOCG00000008251	sf3a1	97	57.069	ENSLAFG00000026032	-	97	56.266	Loxodonta_africana
ENSLOCG00000008251	sf3a1	97	86.753	ENSLAFG00000000448	SF3A1	100	84.962	Loxodonta_africana
ENSLOCG00000008251	sf3a1	97	86.753	ENSMFAG00000031979	SF3A1	100	84.962	Macaca_fascicularis
ENSLOCG00000008251	sf3a1	97	86.753	ENSMMUG00000005547	SF3A1	100	84.962	Macaca_mulatta
ENSLOCG00000008251	sf3a1	97	86.883	ENSMNEG00000037229	SF3A1	100	85.088	Macaca_nemestrina
ENSLOCG00000008251	sf3a1	97	86.883	ENSMLEG00000041908	SF3A1	100	85.088	Mandrillus_leucophaeus
ENSLOCG00000008251	sf3a1	97	88.098	ENSMAMG00000006460	sf3a1	96	88.228	Mastacembelus_armatus
ENSLOCG00000008251	sf3a1	99	87.579	ENSMZEG00005009633	sf3a1	100	87.706	Maylandia_zebra
ENSLOCG00000008251	sf3a1	96	87.500	ENSMGAG00000001330	SF3A1	99	86.788	Meleagris_gallopavo
ENSLOCG00000008251	sf3a1	93	82.632	ENSMAUG00000020317	Sf3a1	100	78.689	Mesocricetus_auratus
ENSLOCG00000008251	sf3a1	97	86.623	ENSMICG00000010038	SF3A1	100	84.837	Microcebus_murinus
ENSLOCG00000008251	sf3a1	97	86.623	ENSMOCG00000008438	Sf3a1	100	84.962	Microtus_ochrogaster
ENSLOCG00000008251	sf3a1	99	84.470	ENSMMOG00000015588	sf3a1	99	84.470	Mola_mola
ENSLOCG00000008251	sf3a1	97	87.386	ENSMODG00000009270	SF3A1	100	85.427	Monodelphis_domestica
ENSLOCG00000008251	sf3a1	99	88.496	ENSMALG00000000148	sf3a1	100	88.622	Monopterus_albus
ENSLOCG00000008251	sf3a1	97	85.195	MGP_CAROLIEiJ_G0016029	Sf3a1	100	84.336	Mus_caroli
ENSLOCG00000008251	sf3a1	97	85.195	ENSMUSG00000002129	Sf3a1	100	84.336	Mus_musculus
ENSLOCG00000008251	sf3a1	97	85.195	MGP_PahariEiJ_G0016862	Sf3a1	100	84.336	Mus_pahari
ENSLOCG00000008251	sf3a1	97	85.195	MGP_SPRETEiJ_G0016870	Sf3a1	100	84.336	Mus_spretus
ENSLOCG00000008251	sf3a1	97	86.883	ENSMPUG00000013144	SF3A1	100	85.213	Mustela_putorius_furo
ENSLOCG00000008251	sf3a1	97	87.013	ENSMLUG00000002139	SF3A1	100	85.213	Myotis_lucifugus
ENSLOCG00000008251	sf3a1	97	87.143	ENSNGAG00000016977	Sf3a1	100	85.088	Nannospalax_galili
ENSLOCG00000008251	sf3a1	99	87.231	ENSNBRG00000016642	sf3a1	100	87.358	Neolamprologus_brichardi
ENSLOCG00000008251	sf3a1	97	86.883	ENSNLEG00000003686	SF3A1	100	85.088	Nomascus_leucogenys
ENSLOCG00000008251	sf3a1	93	78.940	ENSMEUG00000008741	SF3A1	100	76.802	Notamacropus_eugenii
ENSLOCG00000008251	sf3a1	97	86.753	ENSOPRG00000016636	SF3A1	100	84.962	Ochotona_princeps
ENSLOCG00000008251	sf3a1	97	86.528	ENSODEG00000002571	SF3A1	100	84.693	Octodon_degus
ENSLOCG00000008251	sf3a1	99	87.722	ENSONIG00000010848	sf3a1	100	87.468	Oreochromis_niloticus
ENSLOCG00000008251	sf3a1	97	86.753	ENSOCUG00000007633	SF3A1	100	84.962	Oryctolagus_cuniculus
ENSLOCG00000008251	sf3a1	95	85.714	ENSORLG00000013050	sf3a1	99	86.772	Oryzias_latipes
ENSLOCG00000008251	sf3a1	95	87.037	ENSORLG00020003236	sf3a1	95	87.037	Oryzias_latipes_hni
ENSLOCG00000008251	sf3a1	99	85.551	ENSORLG00015017411	sf3a1	100	86.692	Oryzias_latipes_hsok
ENSLOCG00000008251	sf3a1	99	87.452	ENSOMEG00000013362	sf3a1	100	87.326	Oryzias_melastigma
ENSLOCG00000008251	sf3a1	97	87.013	ENSOGAG00000012931	SF3A1	100	85.213	Otolemur_garnettii
ENSLOCG00000008251	sf3a1	97	86.104	ENSOARG00000006849	SF3A1	100	84.211	Ovis_aries
ENSLOCG00000008251	sf3a1	97	85.974	ENSPPAG00000041790	SF3A1	100	84.336	Pan_paniscus
ENSLOCG00000008251	sf3a1	97	87.013	ENSPPRG00000004391	SF3A1	100	85.213	Panthera_pardus
ENSLOCG00000008251	sf3a1	97	86.883	ENSPTIG00000000844	SF3A1	99	86.753	Panthera_tigris_altaica
ENSLOCG00000008251	sf3a1	97	87.273	ENSPTRG00000014240	SF3A1	100	85.088	Pan_troglodytes
ENSLOCG00000008251	sf3a1	97	86.883	ENSPANG00000020772	SF3A1	100	85.088	Papio_anubis
ENSLOCG00000008251	sf3a1	83	94.505	ENSPSIG00000012803	SF3A1	96	94.505	Pelodiscus_sinensis
ENSLOCG00000008251	sf3a1	97	84.505	ENSPMGG00000023096	sf3a1	100	86.068	Periophthalmus_magnuspinnatus
ENSLOCG00000008251	sf3a1	96	86.894	ENSPEMG00000009494	Sf3a1	100	84.962	Peromyscus_maniculatus_bairdii
ENSLOCG00000008251	sf3a1	68	77.091	ENSPMAG00000007139	-	93	76.036	Petromyzon_marinus
ENSLOCG00000008251	sf3a1	97	86.996	ENSPCIG00000022692	SF3A1	100	85.050	Phascolarctos_cinereus
ENSLOCG00000008251	sf3a1	99	77.595	ENSPFOG00000016768	sf3a1	100	77.722	Poecilia_formosa
ENSLOCG00000008251	sf3a1	99	87.358	ENSPLAG00000017268	sf3a1	100	86.979	Poecilia_latipinna
ENSLOCG00000008251	sf3a1	96	87.688	ENSPMEG00000019811	sf3a1	100	87.538	Poecilia_mexicana
ENSLOCG00000008251	sf3a1	99	87.105	ENSPREG00000010347	sf3a1	100	86.852	Poecilia_reticulata
ENSLOCG00000008251	sf3a1	97	86.883	ENSPPYG00000011707	SF3A1	100	85.088	Pongo_abelii
ENSLOCG00000008251	sf3a1	58	85.124	ENSPCAG00000003266	SF3A1	56	85.124	Procavia_capensis
ENSLOCG00000008251	sf3a1	97	86.623	ENSPCOG00000026630	SF3A1	100	84.837	Propithecus_coquereli
ENSLOCG00000008251	sf3a1	95	86.267	ENSPVAG00000017719	SF3A1	94	86.133	Pteropus_vampyrus
ENSLOCG00000008251	sf3a1	99	87.452	ENSPNYG00000018706	sf3a1	100	87.579	Pundamilia_nyererei
ENSLOCG00000008251	sf3a1	99	88.790	ENSPNAG00000003721	sf3a1	99	88.408	Pygocentrus_nattereri
ENSLOCG00000008251	sf3a1	98	84.794	ENSRNOG00000005218	Sf3a1	100	84.336	Rattus_norvegicus
ENSLOCG00000008251	sf3a1	97	86.883	ENSRBIG00000032167	SF3A1	100	85.088	Rhinopithecus_bieti
ENSLOCG00000008251	sf3a1	97	86.883	ENSRROG00000044908	SF3A1	100	85.088	Rhinopithecus_roxellana
ENSLOCG00000008251	sf3a1	93	86.450	ENSSBOG00000021960	SF3A1	98	87.087	Saimiri_boliviensis_boliviensis
ENSLOCG00000008251	sf3a1	99	83.122	ENSSHAG00000003666	SF3A1	99	83.122	Sarcophilus_harrisii
ENSLOCG00000008251	sf3a1	99	89.747	ENSSFOG00015004579	sf3a1	100	90.000	Scleropages_formosus
ENSLOCG00000008251	sf3a1	99	84.430	ENSSMAG00000004275	sf3a1	100	84.937	Scophthalmus_maximus
ENSLOCG00000008251	sf3a1	99	88.354	ENSSDUG00000022219	sf3a1	100	87.848	Seriola_dumerili
ENSLOCG00000008251	sf3a1	99	88.354	ENSSLDG00000012642	sf3a1	100	87.848	Seriola_lalandi_dorsalis
ENSLOCG00000008251	sf3a1	97	84.286	ENSSARG00000005960	SF3A1	99	83.766	Sorex_araneus
ENSLOCG00000008251	sf3a1	96	85.584	ENSSPUG00000018863	SF3A1	100	83.975	Sphenodon_punctatus
ENSLOCG00000008251	sf3a1	99	88.101	ENSSPAG00000011856	sf3a1	100	87.595	Stegastes_partitus
ENSLOCG00000008251	sf3a1	97	87.143	ENSSSCG00000010002	SF3A1	100	85.464	Sus_scrofa
ENSLOCG00000008251	sf3a1	96	87.008	ENSTGUG00000010547	SF3A1	99	86.305	Taeniopygia_guttata
ENSLOCG00000008251	sf3a1	99	85.063	ENSTRUG00000006118	sf3a1	100	82.911	Takifugu_rubripes
ENSLOCG00000008251	sf3a1	58	85.240	ENSTNIG00000005713	sf3a1	88	90.179	Tetraodon_nigroviridis
ENSLOCG00000008251	sf3a1	97	80.130	ENSTBEG00000012771	SF3A1	100	78.571	Tupaia_belangeri
ENSLOCG00000008251	sf3a1	97	86.883	ENSTTRG00000001535	SF3A1	100	85.088	Tursiops_truncatus
ENSLOCG00000008251	sf3a1	99	84.091	ENSUAMG00000006750	SF3A1	99	84.217	Ursus_americanus
ENSLOCG00000008251	sf3a1	97	86.753	ENSUMAG00000016665	SF3A1	97	86.623	Ursus_maritimus
ENSLOCG00000008251	sf3a1	97	86.883	ENSVVUG00000003075	SF3A1	100	85.088	Vulpes_vulpes
ENSLOCG00000008251	sf3a1	99	80.324	ENSXETG00000016144	sf3a1	96	85.200	Xenopus_tropicalis
ENSLOCG00000008251	sf3a1	99	86.852	ENSXCOG00000015653	sf3a1	100	86.094	Xiphophorus_couchianus
ENSLOCG00000008251	sf3a1	99	86.979	ENSXMAG00000002753	sf3a1	100	86.220	Xiphophorus_maculatus