EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000008380 (Gene tree)
Gene ID: 102690973
Gene Symbol: smg5
Alias: zgc:113841
Full Name: protein SMG5-like
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 24420 bases
Position: chrLG24:7623528-7647947
Accession: 102690973
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000010210	EST1	PF10374.9	2.6e-23	1	1
ENSLOCP00000010198	EST1	PF10374.9	3.2e-23	1	1
ENSLOCP00000010210	EST1_DNA_bind	PF10373.9	1.4e-39	1	1
ENSLOCP00000010198	EST1_DNA_bind	PF10373.9	1.9e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000010211	-	3645	XM_006641817	ENSLOCP00000010198	1089 (aa)	-	W5MP89
ENSLOCT00000010223	-	4250	XM_015336648	ENSLOCP00000010210	930 (aa)	XP_015192134	W5MPA1

Gene Model

Click here to download ENSLOCG00000008380's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000008380's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000008380	smg5	92	78.673	ENSG00000198952	SMG5	96	78.638	Homo_sapiens
ENSLOCG00000008380	smg5	99	71.800	ENSAPOG00000019690	smg5	100	69.312	Acanthochromis_polyacanthus
ENSLOCG00000008380	smg5	90	79.146	ENSAMEG00000014458	SMG5	95	79.146	Ailuropoda_melanoleuca
ENSLOCG00000008380	smg5	99	71.862	ENSAOCG00000019483	smg5	90	86.914	Amphiprion_ocellaris
ENSLOCG00000008380	smg5	99	71.757	ENSAPEG00000022949	smg5	95	87.160	Amphiprion_percula
ENSLOCG00000008380	smg5	99	73.016	ENSATEG00000005348	smg5	100	69.531	Anabas_testudineus
ENSLOCG00000008380	smg5	97	62.159	ENSAPLG00000010263	SMG5	100	59.361	Anas_platyrhynchos
ENSLOCG00000008380	smg5	92	78.673	ENSANAG00000032899	SMG5	96	78.638	Aotus_nancymaae
ENSLOCG00000008380	smg5	87	85.012	ENSACLG00000009311	smg5	96	85.012	Astatotilapia_calliptera
ENSLOCG00000008380	smg5	99	74.732	ENSAMXG00000024616	smg5	100	70.530	Astyanax_mexicanus
ENSLOCG00000008380	smg5	95	47.046	ENSBTAG00000021747	-	87	48.276	Bos_taurus
ENSLOCG00000008380	smg5	93	78.588	ENSBTAG00000009435	SMG5	96	78.638	Bos_taurus
ENSLOCG00000008380	smg5	92	78.673	ENSCJAG00000005684	SMG5	96	78.638	Callithrix_jacchus
ENSLOCG00000008380	smg5	92	78.436	ENSCAFG00000016839	SMG5	97	78.140	Canis_familiaris
ENSLOCG00000008380	smg5	92	78.436	ENSCAFG00020006061	SMG5	97	78.140	Canis_lupus_dingo
ENSLOCG00000008380	smg5	92	78.487	ENSCHIG00000007709	SMG5	96	78.404	Capra_hircus
ENSLOCG00000008380	smg5	88	50.882	ENSCHIG00000006323	-	94	49.176	Capra_hircus
ENSLOCG00000008380	smg5	99	61.654	ENSTSYG00000004099	SMG5	95	78.960	Carlito_syrichta
ENSLOCG00000008380	smg5	92	78.673	ENSCCAG00000027409	SMG5	96	78.638	Cebus_capucinus
ENSLOCG00000008380	smg5	92	78.673	ENSCATG00000030539	SMG5	96	78.638	Cercocebus_atys
ENSLOCG00000008380	smg5	92	78.673	ENSCSAG00000002120	SMG5	96	78.638	Chlorocebus_sabaeus
ENSLOCG00000008380	smg5	60	74.729	ENSCHOG00000008741	-	57	74.729	Choloepus_hoffmanni
ENSLOCG00000008380	smg5	77	38.847	ENSCING00000008706	-	89	38.847	Ciona_intestinalis
ENSLOCG00000008380	smg5	93	79.294	ENSCANG00000029208	SMG5	96	79.343	Colobus_angolensis_palliatus
ENSLOCG00000008380	smg5	99	69.990	ENSCSEG00000014220	smg5	91	85.442	Cynoglossus_semilaevis
ENSLOCG00000008380	smg5	99	61.720	ENSCVAG00000000529	smg5	97	68.925	Cyprinodon_variegatus
ENSLOCG00000008380	smg5	99	73.974	ENSDARG00000041481	smg5	100	70.615	Danio_rerio
ENSLOCG00000008380	smg5	85	37.374	ENSDNOG00000039862	-	91	37.374	Dasypus_novemcinctus
ENSLOCG00000008380	smg5	90	71.564	ENSDNOG00000000051	SMG5	96	71.596	Dasypus_novemcinctus
ENSLOCG00000008380	smg5	99	61.838	ENSDORG00000010382	Smg5	96	78.638	Dipodomys_ordii
ENSLOCG00000008380	smg5	63	54.707	ENSEBUG00000003739	smg5	88	54.707	Eptatretus_burgeri
ENSLOCG00000008380	smg5	66	78.736	ENSEEUG00000012690	SMG5	75	78.736	Erinaceus_europaeus
ENSLOCG00000008380	smg5	99	74.129	ENSELUG00000012585	smg5	94	86.588	Esox_lucius
ENSLOCG00000008380	smg5	99	61.580	ENSFCAG00000011783	SMG5	97	77.958	Felis_catus
ENSLOCG00000008380	smg5	70	64.643	ENSFALG00000001166	-	88	80.250	Ficedula_albicollis
ENSLOCG00000008380	smg5	93	66.780	ENSFHEG00000013939	smg5	93	85.366	Fundulus_heteroclitus
ENSLOCG00000008380	smg5	90	80.597	ENSGAFG00000021691	smg5	99	69.643	Gambusia_affinis
ENSLOCG00000008380	smg5	99	71.954	ENSGACG00000013142	smg5	100	68.640	Gasterosteus_aculeatus
ENSLOCG00000008380	smg5	92	78.673	ENSGGOG00000010932	SMG5	96	78.638	Gorilla_gorilla
ENSLOCG00000008380	smg5	87	85.012	ENSHBUG00000008654	smg5	96	85.012	Haplochromis_burtoni
ENSLOCG00000008380	smg5	99	62.203	ENSHGLG00000019152	SMG5	96	78.454	Heterocephalus_glaber_female
ENSLOCG00000008380	smg5	98	62.309	ENSHGLG00100015948	SMG5	94	78.998	Heterocephalus_glaber_male
ENSLOCG00000008380	smg5	84	74.336	ENSHCOG00000010229	smg5	93	78.795	Hippocampus_comes
ENSLOCG00000008380	smg5	99	72.532	ENSIPUG00000006624	Smg5	100	68.345	Ictalurus_punctatus
ENSLOCG00000008380	smg5	99	62.446	ENSSTOG00000001780	SMG5	96	79.108	Ictidomys_tridecemlineatus
ENSLOCG00000008380	smg5	99	72.880	ENSLBEG00000002145	smg5	96	87.923	Labrus_bergylta
ENSLOCG00000008380	smg5	92	78.673	ENSMFAG00000045357	SMG5	96	78.638	Macaca_fascicularis
ENSLOCG00000008380	smg5	92	78.673	ENSMMUG00000000090	SMG5	97	78.638	Macaca_mulatta
ENSLOCG00000008380	smg5	92	78.673	ENSMNEG00000044425	SMG5	96	78.638	Macaca_nemestrina
ENSLOCG00000008380	smg5	92	68.957	ENSMLEG00000041192	SMG5	96	69.014	Mandrillus_leucophaeus
ENSLOCG00000008380	smg5	99	72.322	ENSMAMG00000010683	smg5	100	68.833	Mastacembelus_armatus
ENSLOCG00000008380	smg5	65	56.694	ENSMZEG00005016543	smg5	88	59.835	Maylandia_zebra
ENSLOCG00000008380	smg5	90	77.541	ENSMAUG00000010381	Smg5	96	77.465	Mesocricetus_auratus
ENSLOCG00000008380	smg5	92	78.673	ENSMICG00000002257	SMG5	96	78.638	Microcebus_murinus
ENSLOCG00000008380	smg5	90	79.059	ENSMODG00000016901	SMG5	93	79.108	Monodelphis_domestica
ENSLOCG00000008380	smg5	69	37.349	ENSMODG00000004532	-	89	34.793	Monodelphis_domestica
ENSLOCG00000008380	smg5	73	33.696	ENSMODG00000004735	-	86	33.846	Monodelphis_domestica
ENSLOCG00000008380	smg5	70	33.505	ENSMODG00000010675	-	87	34.367	Monodelphis_domestica
ENSLOCG00000008380	smg5	69	35.433	ENSMODG00000004511	-	77	36.031	Monodelphis_domestica
ENSLOCG00000008380	smg5	99	71.534	ENSMALG00000010375	smg5	100	67.582	Monopterus_albus
ENSLOCG00000008380	smg5	99	60.649	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSLOCG00000008380	smg5	99	60.823	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSLOCG00000008380	smg5	99	60.823	MGP_PahariEiJ_G0026606	Smg5	100	88.268	Mus_pahari
ENSLOCG00000008380	smg5	99	60.714	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSLOCG00000008380	smg5	92	60.140	ENSMPUG00000004546	SMG5	96	77.198	Mustela_putorius_furo
ENSLOCG00000008380	smg5	92	78.910	ENSMLUG00000008518	SMG5	96	78.873	Myotis_lucifugus
ENSLOCG00000008380	smg5	99	61.165	ENSNGAG00000020706	Smg5	96	78.169	Nannospalax_galili
ENSLOCG00000008380	smg5	78	50.376	ENSNGAG00000012101	-	92	50.376	Nannospalax_galili
ENSLOCG00000008380	smg5	99	66.129	ENSNBRG00000004332	smg5	95	83.333	Neolamprologus_brichardi
ENSLOCG00000008380	smg5	92	78.673	ENSNLEG00000012439	SMG5	96	78.638	Nomascus_leucogenys
ENSLOCG00000008380	smg5	99	62.473	ENSMEUG00000012834	SMG5	96	79.108	Notamacropus_eugenii
ENSLOCG00000008380	smg5	92	78.673	ENSOPRG00000009152	SMG5	96	78.454	Ochotona_princeps
ENSLOCG00000008380	smg5	99	62.662	ENSODEG00000012237	SMG5	93	78.923	Octodon_degus
ENSLOCG00000008380	smg5	99	71.773	ENSONIG00000008632	smg5	100	68.491	Oreochromis_niloticus
ENSLOCG00000008380	smg5	90	43.810	ENSOCUG00000023338	-	87	43.810	Oryctolagus_cuniculus
ENSLOCG00000008380	smg5	99	71.278	ENSORLG00000016239	smg5	100	68.468	Oryzias_latipes
ENSLOCG00000008380	smg5	90	83.412	ENSORLG00020013127	smg5	93	83.486	Oryzias_latipes_hni
ENSLOCG00000008380	smg5	99	71.670	ENSORLG00015019014	smg5	93	83.486	Oryzias_latipes_hsok
ENSLOCG00000008380	smg5	99	72.169	ENSOMEG00000021330	smg5	93	72.228	Oryzias_melastigma
ENSLOCG00000008380	smg5	92	79.469	ENSOGAG00000004966	SMG5	95	79.524	Otolemur_garnettii
ENSLOCG00000008380	smg5	92	78.487	ENSOARG00000005778	SMG5	96	78.404	Ovis_aries
ENSLOCG00000008380	smg5	90	51.111	ENSOARG00000011963	-	92	51.111	Ovis_aries
ENSLOCG00000008380	smg5	92	78.436	ENSPPAG00000011996	SMG5	96	78.404	Pan_paniscus
ENSLOCG00000008380	smg5	91	79.397	ENSPPRG00000011901	SMG5	97	78.818	Panthera_pardus
ENSLOCG00000008380	smg5	89	77.078	ENSPTIG00000007892	SMG5	93	76.543	Panthera_tigris_altaica
ENSLOCG00000008380	smg5	92	78.436	ENSPTRG00000049282	-	96	78.404	Pan_troglodytes
ENSLOCG00000008380	smg5	92	78.436	ENSPTRG00000023925	SMG5	96	78.404	Pan_troglodytes
ENSLOCG00000008380	smg5	92	78.673	ENSPANG00000011201	SMG5	96	78.638	Papio_anubis
ENSLOCG00000008380	smg5	99	75.829	ENSPKIG00000009402	smg5	100	71.662	Paramormyrops_kingsleyae
ENSLOCG00000008380	smg5	97	62.528	ENSPSIG00000015198	SMG5	56	49.589	Pelodiscus_sinensis
ENSLOCG00000008380	smg5	84	64.090	ENSPMAG00000000410	smg5	91	64.090	Petromyzon_marinus
ENSLOCG00000008380	smg5	99	62.043	ENSPCIG00000018938	SMG5	54	51.495	Phascolarctos_cinereus
ENSLOCG00000008380	smg5	99	72.458	ENSPFOG00000010191	smg5	100	68.267	Poecilia_formosa
ENSLOCG00000008380	smg5	99	71.593	ENSPLAG00000009332	smg5	100	68.267	Poecilia_latipinna
ENSLOCG00000008380	smg5	99	72.458	ENSPMEG00000014105	smg5	96	84.507	Poecilia_mexicana
ENSLOCG00000008380	smg5	99	72.140	ENSPREG00000017713	smg5	100	68.267	Poecilia_reticulata
ENSLOCG00000008380	smg5	92	78.673	ENSPPYG00000000723	SMG5	96	78.638	Pongo_abelii
ENSLOCG00000008380	smg5	71	77.941	ENSPCAG00000008412	SMG5	77	77.465	Procavia_capensis
ENSLOCG00000008380	smg5	92	78.673	ENSPCOG00000004741	SMG5	96	78.638	Propithecus_coquereli
ENSLOCG00000008380	smg5	92	66.587	ENSPVAG00000016748	SMG5	95	65.962	Pteropus_vampyrus
ENSLOCG00000008380	smg5	99	71.444	ENSPNYG00000013397	smg5	100	68.310	Pundamilia_nyererei
ENSLOCG00000008380	smg5	99	74.973	ENSPNAG00000028363	smg5	100	71.454	Pygocentrus_nattereri
ENSLOCG00000008380	smg5	92	79.147	ENSRBIG00000027428	SMG5	96	79.108	Rhinopithecus_bieti
ENSLOCG00000008380	smg5	92	79.147	ENSRROG00000030035	SMG5	96	79.108	Rhinopithecus_roxellana
ENSLOCG00000008380	smg5	92	78.673	ENSSBOG00000033339	SMG5	96	78.638	Saimiri_boliviensis_boliviensis
ENSLOCG00000008380	smg5	69	36.432	ENSSHAG00000000561	-	89	36.145	Sarcophilus_harrisii
ENSLOCG00000008380	smg5	68	34.549	ENSSHAG00000000935	-	81	36.496	Sarcophilus_harrisii
ENSLOCG00000008380	smg5	77	38.025	ENSSHAG00000009572	-	78	41.772	Sarcophilus_harrisii
ENSLOCG00000008380	smg5	91	79.800	ENSSHAG00000014163	SMG5	95	79.851	Sarcophilus_harrisii
ENSLOCG00000008380	smg5	99	74.865	ENSSFOG00015024175	smg5	100	70.833	Scleropages_formosus
ENSLOCG00000008380	smg5	99	73.228	ENSSMAG00000013059	smg5	100	69.238	Scophthalmus_maximus
ENSLOCG00000008380	smg5	99	71.592	ENSSDUG00000007122	smg5	100	69.075	Seriola_dumerili
ENSLOCG00000008380	smg5	99	71.473	ENSSLDG00000011418	smg5	100	69.319	Seriola_lalandi_dorsalis
ENSLOCG00000008380	smg5	99	53.405	ENSSARG00000012484	SMG5	77	63.615	Sorex_araneus
ENSLOCG00000008380	smg5	99	71.488	ENSSPAG00000014266	smg5	100	69.075	Stegastes_partitus
ENSLOCG00000008380	smg5	98	47.546	ENSSSCG00000039308	-	91	57.416	Sus_scrofa
ENSLOCG00000008380	smg5	98	63.250	ENSTGUG00000003748	-	54	50.247	Taeniopygia_guttata
ENSLOCG00000008380	smg5	99	69.345	ENSTRUG00000012580	smg5	91	82.898	Takifugu_rubripes
ENSLOCG00000008380	smg5	53	83.251	ENSTBEG00000002777	SMG5	59	83.251	Tupaia_belangeri
ENSLOCG00000008380	smg5	99	59.199	ENSTTRG00000001401	SMG5	96	72.770	Tursiops_truncatus
ENSLOCG00000008380	smg5	92	78.043	ENSUAMG00000013721	SMG5	96	77.752	Ursus_americanus
ENSLOCG00000008380	smg5	90	76.559	ENSUMAG00000018041	SMG5	96	75.610	Ursus_maritimus
ENSLOCG00000008380	smg5	53	69.270	ENSVPAG00000009446	SMG5	58	69.327	Vicugna_pacos
ENSLOCG00000008380	smg5	99	61.688	ENSVVUG00000005887	SMG5	97	78.140	Vulpes_vulpes
ENSLOCG00000008380	smg5	78	51.149	ENSXETG00000033791	SMG5	96	51.300	Xenopus_tropicalis
ENSLOCG00000008380	smg5	92	62.209	ENSXCOG00000004379	smg5	99	69.093	Xiphophorus_couchianus
ENSLOCG00000008380	smg5	99	71.504	ENSXMAG00000013499	smg5	96	82.243	Xiphophorus_maculatus