EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000008484 (Gene tree)
Gene ID: 102692494
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 21360 bases
Position: chrLG11:26600488-26621847
Accession: 102692494
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000010336	CPSF_A	PF03178.15	3.8e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000010349	-	4601	XM_006635916	ENSLOCP00000010336	1448 (aa)	-	W5MPM7

Gene Model

Click here to download ENSLOCG00000008484's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000008484's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000008484	cpsf1	100	78.360	ENSG00000071894	CPSF1	100	81.651	Homo_sapiens
ENSLOCG00000008484	cpsf1	100	81.524	ENSAPOG00000019621	cpsf1	100	81.591	Acanthochromis_polyacanthus
ENSLOCG00000008484	cpsf1	97	76.830	ENSAMEG00000005557	CPSF1	99	76.546	Ailuropoda_melanoleuca
ENSLOCG00000008484	cpsf1	100	82.219	ENSACIG00000006112	cpsf1	100	81.875	Amphilophus_citrinellus
ENSLOCG00000008484	cpsf1	100	82.405	ENSAOCG00000007120	cpsf1	100	82.062	Amphiprion_ocellaris
ENSLOCG00000008484	cpsf1	100	83.093	ENSAPEG00000005755	cpsf1	100	82.749	Amphiprion_percula
ENSLOCG00000008484	cpsf1	100	82.088	ENSATEG00000011097	cpsf1	100	82.020	Anabas_testudineus
ENSLOCG00000008484	cpsf1	93	75.519	ENSACAG00000009655	CPSF1	100	75.111	Anolis_carolinensis
ENSLOCG00000008484	cpsf1	100	78.468	ENSANAG00000036514	CPSF1	100	78.330	Aotus_nancymaae
ENSLOCG00000008484	cpsf1	100	81.366	ENSACLG00000012231	cpsf1	99	82.328	Astatotilapia_calliptera
ENSLOCG00000008484	cpsf1	100	77.220	ENSAMXG00000008485	cpsf1	100	76.669	Astyanax_mexicanus
ENSLOCG00000008484	cpsf1	100	77.033	ENSBTAG00000008355	CPSF1	100	77.276	Bos_taurus
ENSLOCG00000008484	cpsf1	100	32.792	WBGene00022301	cpsf-1	99	42.090	Caenorhabditis_elegans
ENSLOCG00000008484	cpsf1	100	78.468	ENSCJAG00000021421	CPSF1	100	78.192	Callithrix_jacchus
ENSLOCG00000008484	cpsf1	97	77.920	ENSCAFG00000001600	CPSF1	99	77.778	Canis_familiaris
ENSLOCG00000008484	cpsf1	100	78.015	ENSCAFG00020020821	CPSF1	100	77.877	Canis_lupus_dingo
ENSLOCG00000008484	cpsf1	100	73.913	ENSCHIG00000015833	CPSF1	100	73.637	Capra_hircus
ENSLOCG00000008484	cpsf1	100	78.813	ENSTSYG00000028560	CPSF1	100	83.028	Carlito_syrichta
ENSLOCG00000008484	cpsf1	97	77.098	ENSCAPG00000014921	CPSF1	99	76.814	Cavia_aperea
ENSLOCG00000008484	cpsf1	100	77.019	ENSCPOG00000011448	CPSF1	100	76.743	Cavia_porcellus
ENSLOCG00000008484	cpsf1	100	78.468	ENSCCAG00000037658	CPSF1	100	81.818	Cebus_capucinus
ENSLOCG00000008484	cpsf1	100	78.192	ENSCATG00000037234	CPSF1	100	81.651	Cercocebus_atys
ENSLOCG00000008484	cpsf1	100	78.384	ENSCLAG00000012166	CPSF1	100	78.039	Chinchilla_lanigera
ENSLOCG00000008484	cpsf1	100	78.330	ENSCSAG00000008502	CPSF1	100	78.054	Chlorocebus_sabaeus
ENSLOCG00000008484	cpsf1	99	81.045	ENSCPBG00000018910	CPSF1	96	80.697	Chrysemys_picta_bellii
ENSLOCG00000008484	cpsf1	96	45.712	ENSCING00000000514	-	100	45.500	Ciona_intestinalis
ENSLOCG00000008484	cpsf1	99	46.416	ENSCSAVG00000002293	-	98	49.302	Ciona_savignyi
ENSLOCG00000008484	cpsf1	98	75.706	ENSCANG00000032760	CPSF1	100	82.110	Colobus_angolensis_palliatus
ENSLOCG00000008484	cpsf1	100	78.798	ENSCGRG00001016344	Cpsf1	100	78.522	Cricetulus_griseus_chok1gshd
ENSLOCG00000008484	cpsf1	100	76.865	ENSCGRG00000003118	Cpsf1	100	76.727	Cricetulus_griseus_crigri
ENSLOCG00000008484	cpsf1	100	80.939	ENSCSEG00000013464	cpsf1	100	80.249	Cynoglossus_semilaevis
ENSLOCG00000008484	cpsf1	83	80.234	ENSCVAG00000014059	cpsf1	100	77.523	Cyprinodon_variegatus
ENSLOCG00000008484	cpsf1	100	83.471	ENSDARG00000034178	cpsf1	100	83.104	Danio_rerio
ENSLOCG00000008484	cpsf1	54	84.726	ENSDNOG00000043654	CPSF1	94	82.709	Dasypus_novemcinctus
ENSLOCG00000008484	cpsf1	97	78.326	ENSDORG00000006278	Cpsf1	99	78.183	Dipodomys_ordii
ENSLOCG00000008484	cpsf1	100	42.800	FBgn0024698	Cpsf160	100	42.483	Drosophila_melanogaster
ENSLOCG00000008484	cpsf1	80	88.079	ENSETEG00000006022	CPSF1	83	88.079	Echinops_telfairi
ENSLOCG00000008484	cpsf1	100	78.498	ENSEASG00005010774	CPSF1	100	78.360	Equus_asinus_asinus
ENSLOCG00000008484	cpsf1	100	78.360	ENSECAG00000022209	CPSF1	100	78.222	Equus_caballus
ENSLOCG00000008484	cpsf1	100	77.893	ENSEEUG00000000471	CPSF1	100	77.686	Erinaceus_europaeus
ENSLOCG00000008484	cpsf1	100	80.926	ENSELUG00000012271	cpsf1	100	81.166	Esox_lucius
ENSLOCG00000008484	cpsf1	100	78.522	ENSFDAG00000016060	CPSF1	100	78.177	Fukomys_damarensis
ENSLOCG00000008484	cpsf1	100	80.550	ENSFHEG00000016801	cpsf1	100	80.275	Fundulus_heteroclitus
ENSLOCG00000008484	cpsf1	100	80.782	ENSGMOG00000000796	cpsf1	100	80.988	Gadus_morhua
ENSLOCG00000008484	cpsf1	95	87.500	ENSGAFG00000018890	cpsf1	100	87.500	Gambusia_affinis
ENSLOCG00000008484	cpsf1	100	82.466	ENSGACG00000008703	cpsf1	100	82.037	Gasterosteus_aculeatus
ENSLOCG00000008484	cpsf1	100	77.160	ENSGAGG00000004276	CPSF1	98	80.853	Gopherus_agassizii
ENSLOCG00000008484	cpsf1	100	78.384	ENSGGOG00000016185	CPSF1	100	81.651	Gorilla_gorilla
ENSLOCG00000008484	cpsf1	100	83.713	ENSHBUG00000018900	cpsf1	100	83.299	Haplochromis_burtoni
ENSLOCG00000008484	cpsf1	100	78.453	ENSHGLG00000016139	CPSF1	100	78.108	Heterocephalus_glaber_female
ENSLOCG00000008484	cpsf1	100	78.384	ENSHGLG00100009750	CPSF1	100	78.039	Heterocephalus_glaber_male
ENSLOCG00000008484	cpsf1	100	80.920	ENSHCOG00000018509	cpsf1	100	80.514	Hippocampus_comes
ENSLOCG00000008484	cpsf1	100	80.424	ENSIPUG00000011259	cpsf1	100	80.287	Ictalurus_punctatus
ENSLOCG00000008484	cpsf1	97	78.252	ENSSTOG00000009957	CPSF1	99	77.896	Ictidomys_tridecemlineatus
ENSLOCG00000008484	cpsf1	100	78.660	ENSJJAG00000023002	Cpsf1	100	78.315	Jaculus_jaculus
ENSLOCG00000008484	cpsf1	91	89.097	ENSKMAG00000001940	cpsf1	99	89.097	Kryptolebias_marmoratus
ENSLOCG00000008484	cpsf1	100	81.014	ENSLBEG00000003601	cpsf1	100	80.621	Labrus_bergylta
ENSLOCG00000008484	cpsf1	88	82.578	ENSLACG00000000233	CPSF1	92	82.220	Latimeria_chalumnae
ENSLOCG00000008484	cpsf1	97	78.063	ENSLAFG00000022601	CPSF1	100	77.920	Loxodonta_africana
ENSLOCG00000008484	cpsf1	100	78.261	ENSMFAG00000037013	CPSF1	100	81.651	Macaca_fascicularis
ENSLOCG00000008484	cpsf1	100	78.261	ENSMMUG00000007380	CPSF1	100	81.662	Macaca_mulatta
ENSLOCG00000008484	cpsf1	97	78.413	ENSMNEG00000043564	CPSF1	100	81.651	Macaca_nemestrina
ENSLOCG00000008484	cpsf1	100	78.330	ENSMLEG00000043010	CPSF1	100	81.651	Mandrillus_leucophaeus
ENSLOCG00000008484	cpsf1	100	82.333	ENSMAMG00000003803	cpsf1	100	81.726	Mastacembelus_armatus
ENSLOCG00000008484	cpsf1	100	81.366	ENSMZEG00005001168	cpsf1	100	80.883	Maylandia_zebra
ENSLOCG00000008484	cpsf1	100	78.867	ENSMAUG00000003601	Cpsf1	100	78.591	Mesocricetus_auratus
ENSLOCG00000008484	cpsf1	100	78.660	ENSMICG00000015767	CPSF1	100	78.384	Microcebus_murinus
ENSLOCG00000008484	cpsf1	100	78.591	ENSMOCG00000022758	Cpsf1	100	78.384	Microtus_ochrogaster
ENSLOCG00000008484	cpsf1	100	82.816	ENSMMOG00000021245	cpsf1	100	82.402	Mola_mola
ENSLOCG00000008484	cpsf1	100	79.396	ENSMODG00000010755	CPSF1	100	79.052	Monodelphis_domestica
ENSLOCG00000008484	cpsf1	100	81.659	ENSMALG00000020545	cpsf1	100	81.322	Monopterus_albus
ENSLOCG00000008484	cpsf1	100	78.798	MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.522	Mus_caroli
ENSLOCG00000008484	cpsf1	100	78.798	ENSMUSG00000034022	Cpsf1	100	78.522	Mus_musculus
ENSLOCG00000008484	cpsf1	100	78.936	MGP_PahariEiJ_G0019946	Cpsf1	100	78.660	Mus_pahari
ENSLOCG00000008484	cpsf1	100	78.798	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.522	Mus_spretus
ENSLOCG00000008484	cpsf1	94	78.424	ENSMPUG00000006419	CPSF1	93	78.130	Mustela_putorius_furo
ENSLOCG00000008484	cpsf1	100	78.729	ENSNGAG00000022460	Cpsf1	100	78.522	Nannospalax_galili
ENSLOCG00000008484	cpsf1	100	78.123	ENSNBRG00000000813	cpsf1	100	78.123	Neolamprologus_brichardi
ENSLOCG00000008484	cpsf1	86	72.444	ENSNLEG00000010633	-	100	81.651	Nomascus_leucogenys
ENSLOCG00000008484	cpsf1	82	89.080	ENSMEUG00000014922	CPSF1	85	89.080	Notamacropus_eugenii
ENSLOCG00000008484	cpsf1	60	89.947	ENSOPRG00000004693	-	70	89.947	Ochotona_princeps
ENSLOCG00000008484	cpsf1	100	78.522	ENSODEG00000013995	CPSF1	100	78.177	Octodon_degus
ENSLOCG00000008484	cpsf1	100	84.069	ENSONIG00000007676	cpsf1	100	83.782	Oreochromis_niloticus
ENSLOCG00000008484	cpsf1	57	83.571	ENSOANG00000010716	CPSF1	87	83.571	Ornithorhynchus_anatinus
ENSLOCG00000008484	cpsf1	100	81.682	ENSORLG00000013544	cpsf1	92	91.770	Oryzias_latipes
ENSLOCG00000008484	cpsf1	100	81.750	ENSORLG00020021693	cpsf1	92	91.770	Oryzias_latipes_hni
ENSLOCG00000008484	cpsf1	100	81.750	ENSORLG00015009979	cpsf1	100	81.140	Oryzias_latipes_hsok
ENSLOCG00000008484	cpsf1	100	81.454	ENSOMEG00000011849	cpsf1	100	81.318	Oryzias_melastigma
ENSLOCG00000008484	cpsf1	100	78.813	ENSOGAG00000000315	CPSF1	100	78.537	Otolemur_garnettii
ENSLOCG00000008484	cpsf1	100	78.399	ENSPPAG00000019280	CPSF1	100	82.960	Pan_paniscus
ENSLOCG00000008484	cpsf1	100	78.399	ENSPTRG00000049288	-	100	82.960	Pan_troglodytes
ENSLOCG00000008484	cpsf1	100	77.069	ENSPTRG00000051253	-	100	82.960	Pan_troglodytes
ENSLOCG00000008484	cpsf1	97	78.413	ENSPANG00000015005	CPSF1	100	81.651	Papio_anubis
ENSLOCG00000008484	cpsf1	100	85.034	ENSPKIG00000002582	cpsf1	100	85.336	Paramormyrops_kingsleyae
ENSLOCG00000008484	cpsf1	100	79.533	ENSPCIG00000009035	CPSF1	100	79.190	Phascolarctos_cinereus
ENSLOCG00000008484	cpsf1	100	80.081	ENSPFOG00000012870	cpsf1	100	79.811	Poecilia_formosa
ENSLOCG00000008484	cpsf1	100	80.094	ENSPREG00000016307	cpsf1	100	79.825	Poecilia_reticulata
ENSLOCG00000008484	cpsf1	93	82.182	ENSPPYG00000018973	CPSF1	97	82.182	Pongo_abelii
ENSLOCG00000008484	cpsf1	91	87.571	ENSPCAG00000011541	CPSF1	94	87.571	Procavia_capensis
ENSLOCG00000008484	cpsf1	100	75.362	ENSPCOG00000020001	CPSF1	100	82.569	Propithecus_coquereli
ENSLOCG00000008484	cpsf1	91	90.341	ENSPVAG00000006761	CPSF1	91	90.341	Pteropus_vampyrus
ENSLOCG00000008484	cpsf1	100	82.629	ENSPNYG00000004906	cpsf1	100	82.221	Pundamilia_nyererei
ENSLOCG00000008484	cpsf1	100	79.023	ENSPNAG00000024395	cpsf1	100	78.473	Pygocentrus_nattereri
ENSLOCG00000008484	cpsf1	100	78.867	ENSRNOG00000030705	Cpsf1	100	78.591	Rattus_norvegicus
ENSLOCG00000008484	cpsf1	100	78.261	ENSRBIG00000044907	CPSF1	100	82.110	Rhinopithecus_bieti
ENSLOCG00000008484	cpsf1	100	78.330	ENSRROG00000044861	CPSF1	100	82.110	Rhinopithecus_roxellana
ENSLOCG00000008484	cpsf1	97	78.485	ENSSBOG00000027177	CPSF1	99	78.199	Saimiri_boliviensis_boliviensis
ENSLOCG00000008484	cpsf1	100	79.396	ENSSHAG00000006500	CPSF1	100	79.052	Sarcophilus_harrisii
ENSLOCG00000008484	cpsf1	100	83.838	ENSSFOG00015004606	cpsf1	100	86.057	Scleropages_formosus
ENSLOCG00000008484	cpsf1	100	81.284	ENSSMAG00000020547	cpsf1	100	81.419	Scophthalmus_maximus
ENSLOCG00000008484	cpsf1	100	83.517	ENSSDUG00000001100	cpsf1	100	83.172	Seriola_dumerili
ENSLOCG00000008484	cpsf1	100	83.437	ENSSLDG00000003619	cpsf1	100	82.885	Seriola_lalandi_dorsalis
ENSLOCG00000008484	cpsf1	89	77.083	ENSSARG00000003643	CPSF1	92	77.083	Sorex_araneus
ENSLOCG00000008484	cpsf1	96	81.636	ENSSPUG00000014396	CPSF1	100	81.062	Sphenodon_punctatus
ENSLOCG00000008484	cpsf1	100	81.984	ENSSPAG00000005349	cpsf1	100	81.714	Stegastes_partitus
ENSLOCG00000008484	cpsf1	100	77.610	ENSSSCG00000005906	CPSF1	100	77.610	Sus_scrofa
ENSLOCG00000008484	cpsf1	96	81.189	ENSTRUG00000013134	cpsf1	99	80.629	Takifugu_rubripes
ENSLOCG00000008484	cpsf1	100	82.478	ENSTNIG00000014027	cpsf1	100	82.136	Tetraodon_nigroviridis
ENSLOCG00000008484	cpsf1	77	70.818	ENSTBEG00000001756	CPSF1	91	69.517	Tupaia_belangeri
ENSLOCG00000008484	cpsf1	89	86.426	ENSTTRG00000001937	CPSF1	90	85.739	Tursiops_truncatus
ENSLOCG00000008484	cpsf1	97	78.307	ENSUAMG00000006476	CPSF1	98	78.023	Ursus_americanus
ENSLOCG00000008484	cpsf1	100	81.435	ENSXCOG00000003608	cpsf1	100	81.297	Xiphophorus_couchianus
ENSLOCG00000008484	cpsf1	100	80.923	ENSXMAG00000005798	cpsf1	100	81.061	Xiphophorus_maculatus