EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSLOCG00000009369 (Gene tree)
Gene ID: 102698705
Gene Symbol: pcbp3
Alias: zgc:109966
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 16858 bases
Position: chrLG12:21984525-22001382
Accession: 102698705
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000011439	KH_1	PF00013.29	3.8e-56	1	3
ENSLOCP00000011439	KH_1	PF00013.29	3.8e-56	2	3
ENSLOCP00000011439	KH_1	PF00013.29	3.8e-56	3	3
ENSLOCP00000011429	KH_1	PF00013.29	4.1e-56	1	3
ENSLOCP00000011429	KH_1	PF00013.29	4.1e-56	2	3
ENSLOCP00000011429	KH_1	PF00013.29	4.1e-56	3	3
ENSLOCP00000011439	KH_2	PF07650.17	1.6e-15	1	1
ENSLOCP00000011429	KH_2	PF07650.17	2.7e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000011446	-	1029	XM_006636640	ENSLOCP00000011429	342 (aa)	XP_006636704	W5MSS0
ENSLOCT00000011456	-	1020	-	ENSLOCP00000011439	339 (aa)	-	W5MST0

Gene Model

Click here to download ENSLOCG00000009369's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000009369's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000009369	pcbp3	97	66.864	ENSLOCG00000013402	pcbp4	73	66.864
ENSLOCG00000009369	pcbp3	98	36.090	ENSLOCG00000009564	igf2bp2b	60	36.090
ENSLOCG00000009369	pcbp3	63	39.706	ENSLOCG00000006229	khsrp	55	39.706
ENSLOCG00000009369	pcbp3	94	33.140	ENSLOCG00000014804	nova2	86	31.390
ENSLOCG00000009369	pcbp3	50	34.507	ENSLOCG00000011599	igf2bp3	61	34.507
ENSLOCG00000009369	pcbp3	96	76.994	ENSLOCG00000005598	pcbp2	70	76.994
ENSLOCG00000009369	pcbp3	73	52.857	ENSLOCG00000002262	hnrpkl	57	52.857
ENSLOCG00000009369	pcbp3	72	42.254	ENSLOCG00000009727	NOVA1	96	36.620
ENSLOCG00000009369	pcbp3	91	34.921	ENSLOCG00000003745	fubp1	51	32.258
ENSLOCG00000009369	pcbp3	97	87.613	ENSLOCG00000005058	zgc:110045	81	87.613