EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSLOCG00000009681 (Gene tree)
Gene ID: 102686630
Gene Symbol: PABPC1
Alias: PABP3|PABPL3|tPABP
Full Name: poly(A) binding protein cytoplasmic 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 9398 bases
Position: chrLG11:32826391-32835788
Accession: 102686630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000011833	PABP	PF00658.18	3.4e-32	1	1
ENSLOCP00000011833	RRM_5	PF13893.6	8.7e-09	1	2
ENSLOCP00000011833	RRM_5	PF13893.6	8.7e-09	2	2
ENSLOCP00000011833	RRM_1	PF00076.22	4.3e-92	1	4
ENSLOCP00000011833	RRM_1	PF00076.22	4.3e-92	2	4
ENSLOCP00000011833	RRM_1	PF00076.22	4.3e-92	3	4
ENSLOCP00000011833	RRM_1	PF00076.22	4.3e-92	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000011853	PABPC1-201	2121	XM_006635975	ENSLOCP00000011833	640 (aa)	XP_006636038	W5MTX4

Gene Model

Click here to download ENSLOCG00000009681's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000009681's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000009681	PABPC1	57	33.113	ENSLOCG00000000284	elavl1b	90	33.113
ENSLOCG00000009681	PABPC1	58	37.349	ENSLOCG00000012575	ELAVL2	90	37.349
ENSLOCG00000009681	PABPC1	57	32.895	ENSLOCG00000005966	celf1	61	32.895
ENSLOCG00000009681	PABPC1	98	78.378	ENSLOCG00000001877	pabpc4	98	78.696
ENSLOCG00000009681	PABPC1	98	74.451	ENSLOCG00000007519	pabpc1l	99	74.451
ENSLOCG00000009681	PABPC1	58	31.522	ENSLOCG00000015324	tia1l	72	31.522
ENSLOCG00000009681	PABPC1	58	37.349	ENSLOCG00000007647	elavl3	90	37.349
ENSLOCG00000009681	PABPC1	56	39.344	ENSLOCG00000009048	sf3b4	68	39.344
ENSLOCG00000009681	PABPC1	58	36.145	ENSLOCG00000009363	elavl4	79	36.145