EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSLOCG00000009727 (Gene tree)
Gene ID: 102694293
Gene Symbol: NOVA1
Alias: -
Full Name: NOVA alternative splicing regulator 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 66388 bases
Position: chrLG7:5866611-5932998
Accession: 102694293
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000011876	KH_1	PF00013.29	8.6e-47	1	3
ENSLOCP00000011876	KH_1	PF00013.29	8.6e-47	2	3
ENSLOCP00000011876	KH_1	PF00013.29	8.6e-47	3	3
ENSLOCP00000011879	KH_1	PF00013.29	3.6e-33	1	2
ENSLOCP00000011879	KH_1	PF00013.29	3.6e-33	2	2
ENSLOCP00000011879	KH_2	PF07650.17	1.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000011896	NOVA1-201	1434	XM_006632300	ENSLOCP00000011876	477 (aa)	XP_006632363	W5MU17
ENSLOCT00000011900	NOVA1-202	1062	-	ENSLOCP00000011879	353 (aa)	-	W5MU20

Gene Model

Click here to download ENSLOCG00000009727's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000009727's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000009727	NOVA1	65	32.877	ENSLOCG00000006229	khsrp	61	32.432
ENSLOCG00000009727	NOVA1	63	40.625	ENSLOCG00000005598	pcbp2	68	40.625
ENSLOCG00000009727	NOVA1	96	36.620	ENSLOCG00000009369	pcbp3	72	42.254
ENSLOCG00000009727	NOVA1	100	75.253	ENSLOCG00000014804	nova2	99	71.346
ENSLOCG00000009727	NOVA1	94	33.721	ENSLOCG00000005058	zgc:110045	73	40.351