EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSLOCG00000009778 (Gene tree)
Gene ID: 102693082
Gene Symbol: prdm5
Alias: un-named hi61|unm hi61
Full Name: PR/SET domain 5
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 81002 bases
Position: chrLG4:33821655-33902656
Accession: 102693082
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	1	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	2	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	3	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	4	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	5	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	6	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	7	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	8	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	9	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	10	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	11	12
ENSLOCP00000011958	zf-C2H2	PF00096.26	4e-65	12	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	1	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	2	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	3	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	4	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	5	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	6	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	7	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	8	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	9	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	10	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	11	12
ENSLOCP00000011948	zf-C2H2	PF00096.26	4.4e-65	12	12
ENSLOCP00000011958	zf-met	PF12874.7	3.3e-27	1	4
ENSLOCP00000011958	zf-met	PF12874.7	3.3e-27	2	4
ENSLOCP00000011958	zf-met	PF12874.7	3.3e-27	3	4
ENSLOCP00000011958	zf-met	PF12874.7	3.3e-27	4	4
ENSLOCP00000011948	zf-met	PF12874.7	3.6e-27	1	4
ENSLOCP00000011948	zf-met	PF12874.7	3.6e-27	2	4
ENSLOCP00000011948	zf-met	PF12874.7	3.6e-27	3	4
ENSLOCP00000011948	zf-met	PF12874.7	3.6e-27	4	4
ENSLOCP00000011958	zf-C2H2_jaz	PF12171.8	1.6e-31	1	1
ENSLOCP00000011948	zf-C2H2_jaz	PF12171.8	1.8e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000011969	-	2196	-	ENSLOCP00000011948	630 (aa)	-	W5MU89
ENSLOCT00000011979	-	2187	XM_006629587	ENSLOCP00000011958	627 (aa)	XP_015200246	W5MU99

Gene Model

Click here to download ENSLOCG00000009778's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000009778's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000009778	prdm5	62	40.367	ENSLOCG00000004537	wt1a	60	36.719
ENSLOCG00000009778	prdm5	76	33.824	ENSLOCG00000014144	-	99	34.921
ENSLOCG00000009778	prdm5	74	40.090	ENSLOCG00000017422	-	71	40.237
ENSLOCG00000009778	prdm5	74	46.789	ENSLOCG00000018285	-	100	46.789
ENSLOCG00000009778	prdm5	64	37.500	ENSLOCG00000007573	scrt1b	57	37.500
ENSLOCG00000009778	prdm5	74	39.655	ENSLOCG00000014210	-	53	39.655
ENSLOCG00000009778	prdm5	76	35.362	ENSLOCG00000016466	-	99	35.362
ENSLOCG00000009778	prdm5	76	35.354	ENSLOCG00000004208	-	99	35.354
ENSLOCG00000009778	prdm5	74	38.768	ENSLOCG00000004661	-	99	38.768
ENSLOCG00000009778	prdm5	80	32.727	ENSLOCG00000003678	znf319b	89	33.628
ENSLOCG00000009778	prdm5	73	35.802	ENSLOCG00000017736	znf648	62	40.000
ENSLOCG00000009778	prdm5	75	41.463	ENSLOCG00000014366	-	99	41.463
ENSLOCG00000009778	prdm5	73	48.980	ENSLOCG00000002427	sall4	55	48.980
ENSLOCG00000009778	prdm5	85	41.379	ENSLOCG00000003926	znf236	68	39.286
ENSLOCG00000009778	prdm5	64	39.860	ENSLOCG00000004443	snai1a	58	39.860
ENSLOCG00000009778	prdm5	75	39.130	ENSLOCG00000005750	gfi1b	53	39.130
ENSLOCG00000009778	prdm5	52	40.000	ENSLOCG00000004887	SNAI3	94	38.621
ENSLOCG00000009778	prdm5	77	33.333	ENSLOCG00000009647	-	50	32.601
ENSLOCG00000009778	prdm5	77	40.146	ENSLOCG00000005992	SNAI2	75	40.146
ENSLOCG00000009778	prdm5	75	36.688	ENSLOCG00000017864	-	99	36.688
ENSLOCG00000009778	prdm5	71	38.389	ENSLOCG00000000714	-	89	38.389
ENSLOCG00000009778	prdm5	80	32.727	ENSLOCG00000000544	znf319b	89	33.628
ENSLOCG00000009778	prdm5	63	37.594	ENSLOCG00000002246	scrt2	54	37.594
ENSLOCG00000009778	prdm5	93	40.789	ENSLOCG00000005429	prdm12b	73	40.789