EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSLOCG00000012903 (Gene tree)
Gene ID: 102687164
Gene Symbol: lsm5
Alias: zgc:171959
Full Name: LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 3234 bases
Position: chrLG9:47476133-47479366
Accession: 102687164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000015887	LSM	PF01423.22	6.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000015917	-	273	XM_006634456	ENSLOCP00000015887	91 (aa)	XP_006634519	W5N5H8

Gene Model

Click here to download ENSLOCG00000012903's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000012903's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000012903	lsm5	76	32.877	ENSLOCG00000011927	snrpe	77	32.877
ENSLOCG00000012903	lsm5	82	36.000	ENSLOCG00000013560	lsm3	74	36.000