EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSLOCG00000013863 (Gene tree)
Gene ID: 102682961
Gene Symbol: polr2a
Alias: im:7136071
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 23905 bases
Position: chrLG2:60622485-60646389
Accession: 102682961
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000017099	RNA_pol_Rpb1_5	PF04998.17	2.4e-100	1	1
ENSLOCP00000017105	RNA_pol_Rpb1_5	PF04998.17	2.6e-100	1	1
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	1	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	2	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	3	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	4	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	5	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	6	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	7	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	8	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	9	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	10	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	11	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	12	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	13	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	14	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	15	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	16	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	17	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	18	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	19	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	20	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	21	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	22	23
ENSLOCP00000017105	RNA_pol_Rpb1_R	PF05001.13	2.4e-19	23	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	1	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	2	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	3	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	4	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	5	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	6	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	7	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	8	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	9	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	10	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	11	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	12	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	13	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	14	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	15	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	16	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	17	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	18	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	19	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	20	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	21	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	22	23
ENSLOCP00000017099	RNA_pol_Rpb1_R	PF05001.13	1e-14	23	23
ENSLOCP00000017099	RNA_pol_Rpb1_4	PF05000.17	8e-38	1	1
ENSLOCP00000017105	RNA_pol_Rpb1_4	PF05000.17	8.7e-38	1	1
ENSLOCP00000017099	RNA_pol_Rpb1_2	PF00623.20	1.1e-74	1	1
ENSLOCP00000017105	RNA_pol_Rpb1_2	PF00623.20	1.2e-74	1	1
ENSLOCP00000017099	RNA_pol_Rpb1_3	PF04983.18	2.6e-50	1	1
ENSLOCP00000017105	RNA_pol_Rpb1_3	PF04983.18	2.9e-50	1	1
ENSLOCP00000017099	RNA_pol_Rpb1_1	PF04997.12	1.4e-108	1	1
ENSLOCP00000017105	RNA_pol_Rpb1_1	PF04997.12	5.1e-107	1	1
ENSLOCP00000017099	RNA_pol_Rpb1_7	PF04990.12	4e-55	1	1
ENSLOCP00000017105	RNA_pol_Rpb1_7	PF04990.12	4.3e-55	1	1
ENSLOCP00000017099	RNA_pol_Rpb1_6	PF04992.14	4.4e-67	1	1
ENSLOCP00000017105	RNA_pol_Rpb1_6	PF04992.14	4.8e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000017135	-	5920	-	ENSLOCP00000017105	1959 (aa)	-	W5N8Z6
ENSLOCT00000017129	-	10586	XM_006627435	ENSLOCP00000017099	1876 (aa)	XP_006627498	W5N8Z0

Gene Model

Click here to download ENSLOCG00000013863's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000013863's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000013863	polr2a	63	32.751	ENSLOCG00000010881	polr1a	73	31.872
ENSLOCG00000013863	polr2a	70	39.040	ENSLOCG00000004942	polr3a	91	39.317