EuRBPDB

Description

Ensembl ID: ENSLOCG00000014591 (Gene tree)
Gene ID: 102685605
Gene Symbol: smarca1
Alias: si:dkey-148b12.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 19638 bases
Position: chrLG7:39808230-39827867
Accession: 102685605
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000017970	ResIII	PF04851.15	8.8e-12	1	1
ENSLOCP00000017967	ResIII	PF04851.15	9.4e-12	1	1
ENSLOCP00000017967	DEAD	PF00270.29	7.5e-07	1	1
ENSLOCP00000017970	DEAD	PF00270.29	7.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000018002	-	4288	XM_006632756	ENSLOCP00000017970	1038 (aa)	XP_006632819	W5NBG1
ENSLOCT00000017999	-	4329	XM_006632757	ENSLOCP00000017967	1026 (aa)	-	W5NBF8

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000014591	smarca1	96	86.437	ENSLOCG00000008966	SMARCA5	96	86.437
ENSLOCG00000014591	smarca1	53	45.037	ENSLOCG00000010574	chd1l	53	45.037