EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Description

Ensembl ID: ENSLOCG00000015698 (Gene tree)
Gene ID: 102682515
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 34750 bases
Position: chrLG8:14503237-14537986
Accession: 102682515
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000019326	Upf2	PF04050.14	2.6e-29	1	1
ENSLOCP00000019327	Upf2	PF04050.14	3e-29	1	1
ENSLOCP00000019326	MIF4G	PF02854.19	2.6e-81	1	3
ENSLOCP00000019326	MIF4G	PF02854.19	2.6e-81	2	3
ENSLOCP00000019326	MIF4G	PF02854.19	2.6e-81	3	3
ENSLOCP00000019327	MIF4G	PF02854.19	2.7e-81	1	3
ENSLOCP00000019327	MIF4G	PF02854.19	2.7e-81	2	3
ENSLOCP00000019327	MIF4G	PF02854.19	2.7e-81	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000019358	UPF2-201	6589	XM_006633348	ENSLOCP00000019326	1266 (aa)	XP_015207795	W5NFB7
ENSLOCT00000019359	UPF2-202	3972	XM_015352310	ENSLOCP00000019327	1271 (aa)	XP_015207796	W5NFB8

Gene Model

Click here to download ENSLOCG00000015698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000015698's network