EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSLOCG00000016170 (Gene tree)
Gene ID: 102683958
Gene Symbol: ddx43
Alias: zgc:174910
Full Name: DEAD-box helicase 43
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 12584 bases
Position: chrLG16:10315598-10328181
Accession: 102683958
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000019928	KH_1	PF00013.29	6.3e-13	1	1
ENSLOCP00000019926	KH_1	PF00013.29	6.4e-13	1	1
ENSLOCP00000019928	ResIII	PF04851.15	2.5e-06	1	1
ENSLOCP00000019926	ResIII	PF04851.15	2.6e-06	1	1
ENSLOCP00000019928	DEAD	PF00270.29	7.6e-43	1	1
ENSLOCP00000019926	DEAD	PF00270.29	8e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000019961	-	2454	-	ENSLOCP00000019928	667 (aa)	-	W5NH19
ENSLOCT00000019959	-	2484	XM_006638758	ENSLOCP00000019926	677 (aa)	XP_015218404	W5NH17

Gene Model

Click here to download ENSLOCG00000016170's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000016170's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000016170	ddx43	69	45.043	ENSLOCG00000013534	ddx5	73	44.946
ENSLOCG00000016170	ddx43	55	31.218	ENSLOCG00000017604	ddx28	72	30.825
ENSLOCG00000016170	ddx43	59	41.106	ENSLOCG00000002122	ddx3xa	59	40.000
ENSLOCG00000016170	ddx43	58	40.554	ENSLOCG00000011956	DDX41	63	40.554
ENSLOCG00000016170	ddx43	55	30.831	ENSLOCG00000006534	DDX39A	85	30.831
ENSLOCG00000016170	ddx43	65	34.292	ENSLOCG00000007710	ddx59	68	34.292
ENSLOCG00000016170	ddx43	51	35.072	ENSLOCG00000003108	ddx18	51	35.072
ENSLOCG00000016170	ddx43	51	32.464	ENSLOCG00000000770	ddx6	69	32.464
ENSLOCG00000016170	ddx43	58	37.913	ENSLOCG00000002659	ddx27	50	37.913
ENSLOCG00000016170	ddx43	53	32.861	ENSLOCG00000015796	eif4a3	84	32.861
ENSLOCG00000016170	ddx43	53	31.000	ENSLOCG00000005630	ddx31	54	31.000
ENSLOCG00000016170	ddx43	57	40.821	ENSLOCG00000007385	ddx23	50	40.580
ENSLOCG00000016170	ddx43	52	35.694	ENSLOCG00000000847	eif4a2	84	35.694
ENSLOCG00000016170	ddx43	58	40.452	ENSLOCG00000010887	ddx4	82	39.950
ENSLOCG00000016170	ddx43	55	33.155	ENSLOCG00000002119	ddx49	75	33.155
ENSLOCG00000016170	ddx43	51	35.569	ENSLOCG00000014465	eif4a1b	83	35.569