EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSLOCG00000016919 (Gene tree)
Gene ID: 102691782
Gene Symbol: syncripl
Alias: wu:fc27c07|zgc:55901
Full Name: synaptotagmin binding cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 7774 bases
Position: chrLG1:52535528-52543301
Accession: 102691782
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000020915	RRM_5	PF13893.6	1.5e-06	1	1
ENSLOCP00000020915	RRM_1	PF00076.22	2.9e-43	1	3
ENSLOCP00000020915	RRM_1	PF00076.22	2.9e-43	2	3
ENSLOCP00000020915	RRM_1	PF00076.22	2.9e-43	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000020951	-	2963	XM_006626143	ENSLOCP00000020915	464 (aa)	XP_006626206	W5NJV6

Gene Model

Click here to download ENSLOCG00000016919's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000016919's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000016919	syncripl	89	46.411	ENSLOCG00000012966	rbm47	52	52.615
ENSLOCG00000016919	syncripl	87	82.426	ENSLOCG00000004400	hnrnpr	69	79.302
ENSLOCG00000016919	syncripl	75	50.423	ENSLOCG00000008298	rbm46	65	55.556
ENSLOCG00000016919	syncripl	54	34.524	ENSLOCG00000015324	tia1l	74	34.524
ENSLOCG00000016919	syncripl	66	53.247	ENSLOCG00000006302	a1cf	52	52.716